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  • Anne A, Bagayoko C, Fontelo P. Evaluation de BabelMeSH en Francais. IRBM 2009. DOI: 10.1016/j.irbm.2009.06.006.
  • Hristovski D, Kastrin A, Peterlin B, Rindflesch TC. Combining Semantic Relations and DNA Microarray Data for Novel Hypotheses Generation Lecture Notes in Bioinformatics. Springer
  • Kilicoglu H, Demner-Fushman D, Rindflesch TC, Wilczynski NL, Haynes RB. Towards Automatic Recognition of Scientifically Rigorous Clinical Research Evidence J Am Med Inform Assoc. 2009 Jan-Feb;16(1):25-31. Epub 2008 Oct 24.
  • Zweigenbaum P, Demner-Fushman D. Bioinformatics: Tools and Applications. Springer 2009.
  • Leroy G, Miller T, Rosemblat G, Browne A. A Balanced Approach to Health Information Evaluation: A Vocabulary-based Naive Bayes Classifier and Readability Formulas JASIST, 59(9):1409-1419, 2008
  • Zeng K, Bodenreider O, Kilbourne J, Nelson SJ. Standards, Security and Usability: Experience with MyMedicationList [Abstract]. Proc. AMIA Spring Congress 2008
  • Neveol A, Shooshan SE, Claveau V. Automatic Inference of Indexing Rules for MEDLINE BMC Bioinformatics. 2008 Nov 19;9 Suppl 11:S11
  • Liu F, Fontelo P, Fiszman M. Clinically-Weighted Terms in the Evaluation of MeSH Translations: BabelMeSH in Portuguese as a Model. AMIA Annu Symp Proc; 2008 Nov 8-12; Washington DC. p. 1027.
  • Friedlin FJ, McDonald C. A Software Tool for Removing Patient Identifying Information from Clinical Documents J Am Med Inform Assoc. 2008 Sep-Oct;15(5):601-10. Epub 2008 Jun 25
  • Sahoo SS, Bodenreider O, Rutter JL, Skinner KJ, Sheth AP. An Ontology-driven Semantic Mash-up of Gene and Biological pathway information: Application to the domain of nicotine dependence J Biomed Inform. 2008 Oct;41(5):752-65. Epub 2008 Feb 29
  • Neveol A, Deserno TM, Darmoni SJ, Guld MO, Aronson AR. Natural Language Processing Versus Content-BasedImage Analysis for Medical Document Retrieval J Am Soc Inf Sci Technol. 2008 Sep 18;60(1):123-134
  • Tharakaraman K, Bodenreider O, Landsman D, Spouge JL, Marino-Ramirez. The Biological Function of Some Human Transcription Factor Binding Motifs Varies with Position Relative to the Transcription Start Site Nucleic Acids Res. 2008 May;36(8):2777-86. Epub 2008 Mar 26
  • Fung KW, Bodenreider O, Aronson AR, Hole WT, Srinivasan S. Combining Lexical and Semantic Methods of Inter-terminology Mapping Using the UMLS. Stud Health Technol Inform. 2007;129(Pt 1):605-9.
  • Sahoo SS, Zeng K, Bodenreider O, Sheth A. From 'Glycosyltransferase' to 'Congenital Muscular Dystrophy': Integrating Knowledge from NCBI Entrez Gene and the Gene Ontology Stud Health Technol Inform. 2007;129(Pt 2):1260-4
  • Leon SA, Fontelo P. MedlinePlus en Espaniol and Spanish-Speakers. AMIA Annu Symp Proc; 2007 Nov 10-14; Chicago. p. 1028.
  • Liu F, Fontelo P, Ackerman MJ. BabelMeSH2 and PICO Linguist2: Combined Language Search for MEDLINE/PubMed. AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2007 Nov 10-14; Chicago. p. 1036.
  • Sneiderman CA, Demner-Fushman D, Fiszman M, Ide NC, Rindflesch TC. Knowledge-Based Methods to Help Clinicians Find Answers in MEDLINE. J Am Med Inform Assoc. 2007 Nov-Dec;14(6):772-80. Epub 2007 Aug 21.
  • Ruch P, Geissbuhler A, Gobeill J, Lisacek F, Tbahriti I, Veuthey A, Aronson AR. Using Discourse Analysis to Improve Text Categorization in MEDLINE Stud Health Technol Inform. 2007;129(Pt 1):710-5
  • Logan RA. Clinical, Classroom or Personal Education: Attitudes About Health Literacy J Med Libr Assoc. 2007 Apr;95(2):127-37, e48
  • Keselman A, Tse T, Crowell J, Browne AC, Ngo L, Zeng Q. Assessing Consumer Health Vocabulary Familiarity: An Exploratory Study J Med Internet Res. 2007 Mar 14;9(1):e5
  • Tolentino HD, Matters MD, Walop W, Law B, Tong W, Liu F, Fontelo P, Kohl K, Payne DC. A UMLS-based Spell Checker for Natural Language Processing in Vaccine Safety. BMC Med Inform Decis Mak. 2007 Feb 12;7:3. DOI: 10.1186/1472-6947-7-3.
  • Keselman A, Massengale L, Ngo L, Browne A, Zeng Q. The Effect of User Factors on Consumer Familiarity with Health Terms: Using Gender as a Proxy for Background Knowledge about Gender-Specific Illnesses ISBMDA 2006: 472-481
  • Golbreich C, Zhang S, Bodenreider O. The Foundational Model of Anatomy in OWL: Experience and Perspectives Web Semant. 2006;4(3):181-195
  • Slaughter LA, Soergel D, Rindflesch TC. Semantic Representation of Consumer Questions and Physician Answers Int J Med Inform. 2006 Jul;75(7):513-29. Epub 2005 Aug 24
  • Tolentino H, Matters M, Walop W, Law B, Tong W, Liu F, Fontelo P, Kohl K, Payne D. Concept Negation in Free Text Components of Vaccine Safety Reports. AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2006 Nov 11-15; Washington DC. p. 1122.

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