PUBLICATIONS

Abstract

MeSH indexing: machine learning and lessons learned.


Jimeno-Yepes A, Wilkowski B, Mork JG, Demner-Fushman D, Aronson AR

ACM SIGHIT International Health Informatics Symposium, Miami, FL, USA, 2012.

Abstract:

Due to the large yearly growth of MEDLINE, MeSH indexing is becoming a more difficult task for a relatively small group of highly qualified indexing staff at the US NationalLibrary of Medicine (NLM). The Medical Text Indexer (MTI) is a support tool for assisting indexers; this tool relies on MetaMap and a k-NN approach called PubMed Related Citations (PRC). Our motivation is to improve the quality of MTI based on machine learning. Typical machine learning approaches fit this indexing task into text categorization.In this work, we have studied some Medical Subject Headings (MeSH) recommended by MTI and analyzed the issues when using standard machine learning algorithms. Weshow that in some cases machine learning can improve the annotations already recommended by MTI, that machine learning based on low variance methods achieves better performance and that each MeSH heading presents a different behavior. In addition, there are several factors which make this task difficult (e.g. limited access to the full-text of the citations) which provide direction for future work.


Jimeno-Yepes A, Wilkowski B, Mork JG, Demner-Fushman D, Aronson AR MeSH indexing: machine learning and lessons learned. 
ACM SIGHIT International Health Informatics Symposium, Miami, FL, USA, 2012.

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