PUBLICATIONS

Alzamzmi GA, Rajaraman S, Sachdev V, Antani S. Trilateral Attention Network for Real-Time Cardiac Region Segmentation. 
IEEE Access, vol. 9, pp. 118205-118214, 2021, doi: 10.1109/ACCESS.2021.3107303.
Huser V, Williams ND, Mayer CS. Linking provider specialty and outpatient diagnoses in Medicare claims data: Data quality implications. 
Appl Clin Inform. 2021 Aug;12(4):729-736. doi: 10.1055/s-0041-1732404.
Rajaraman S, Alzamzmi GA, Folio L, Alderson P, Antani S. Chest X-ray bone suppression for improving classification of tuberculosis-consistent findings. 
Diagnostics. 2021; 11(5):840. https://doi.org/10.3390/diagnostics11050840
Alzamzmi GA, Rajaraman S, Antani S. UMS-Rep: Unified Modality-Specific Representation for Efficient Medical Image Analysis. 
(2021) Informatics in Medicine Unlocked, 24, art. no. 100571. http://www.journals.elsevier.com/informatics-in-medicine-unlocked doi: 10.1016/j.imu.2021.100571
Williams N, Mayer CS, Huser V. Data Characterization of Medicaid: Legacy and New Data Formats in the CMS Virtual Research Data Center. 
AMIA Annu Symp Proc. 2021;2021:644-652.
Williams ND, Huser V, Rhame F, Mayer CS, Fung KW. The changing patterns of comorbidities associated with human immunodeficiency virus infection, a longitudinal retrospective cohort study of Medicare patients. 
Medicine (Baltimore). 2021;100(16):e25428. doi:10.1097/MD.0000000000025428.
Wilson P, Huser V. Discoverability of Information on Clinical Trial Data Sharing Platforms.  
J Med Libr Assoc. 2021 Apr 1;109(2):240-247. doi: 10.5195/jmla.2021.992.
Duarte-Salles T, Vizcaya D, Pistillo A, Casajust P, Sena AG, Lai LYH, Prats-Uribe A, Ahmed W-U-R, Alshammari TM, Alghoul H, Alser O, Burn E, You SC, Areia C, Blacketer C, DuVall S, Falconer T, Fernandez-Bertolin S, Fortin S, Golozar A, Gong M, Tan EH, Huser V, Iveli P, Morales DR, Nyberg F, Posada J. 30-Day Outcomes of Children and Adolescents With COVID-19: An International Experience.  
Pediatrics September 2021, 148 (3) e2020042929; DOI: https://doi.org/10.1542/peds.2020-042929.
Yang F, Yu H, Kantipudi K, Rosenthal A, Hurt D, Antani S, Yaniv ZR, Jaeger S. Differentiating between Drug-Sensitive and Drug-Resistant Tuberculosis with Machine Learning for Clinical and Radiological Features. 
Quantitative Imaging in Medicine and Surgery, 0(0): 1–16, 2021. Publish Ahead of Print.
Niu P, Wang L, Xie B, Robini M, Boussel, L Douek P, Zhu Y, Yang F. Improved Image Reconstruction Using Multi-Energy Information in Spectral Photon-Counting CT. 
IEEE Access, vol. 9, pp. 97981-97989, 2021, doi: 10.1109/ACCESS.2021.3083505.
Karki M, Kantipudi K, Yu H, Yang F, Kassim Y, Yaniv Z,Jaeger S. Identifying Drug-Resistant Tuberculosis in Chest Radiographs: Evaluation of CNN Architectures and Training Strategies. 
43rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, accepted on July 15th, 2021, will be held virtually October 31 – November 4, 2021.
Angara S, Guo P, Xue Z, Antani S. Semi-Supervised Learning for Cervical Precancer Detection. 
2021 IEEE 34th International Symposium on Computer-Based Medical Systems (CBMS), 2021, pp. 202-206, doi: 10.1109/CBMS52027.2021.00072.
Xue Z, Guo P, Desai K, Pal A, Ajenifuja KO, Adepiti CA, Long LR, Schiffman M, Antani S. A Deep Clustering Method for Analyzing Uterine Cervix Images Across Imaging Devices. 
34th IEEE International Symposium on Computer-Based Medical Systems (CBMS), June 2021, pp. 527-532, doi: 10.1109/CBMS52027.2021.00085.
Guo P, Xue Z, Jeronimo J, Gage JC, Desai KT, Befano B, García F, Long LR, Schiffman M, Antani S. Network Visualization and Pyramidal Feature Comparison for Ablative Treatability Classification Using Digitized Cervix Images. 
J Clin Med. 2021 Mar 1;10(5):953. doi: 10.3390/jcm10050953.
Desai KT, Ajenifuja KO, Banjo A, Adepiti CA, Novetsky A, Sebag C, Einstein MH, Oyinloye T, Litwin TR, Horning M, Olanrewaju FO, Oripelaye MM, Afolabi E, Odujoko OO, Castle PE, Antani S, Wilson B, Hu L, Mehanian C, Demarco M, Gage JC, Xue Z, Long LR, Cheung L, Egemen D, Wentzensen N, Schiffman M. Design and feasibility of a novel program of cervical screening in Nigeria: self-sampled HPV testing paired with visual triage. Infect Agent Cancer. 
2020 Oct 14;15:60. doi: 10.1186/s13027-020-00324-5.
Ye J, Xue Y, Long LR, Antani S, Xue Z, Cheng K, Huang X. Synthetic Sample Selection via Reinforcement Learning. 
In: Martel A.L. et al. (eds) Medical Image Computing and Computer Assisted Intervention – MICCAI 2020. MICCAI 2020. Lecture Notes in Computer Science, vol 12261. Springer, Cham. https://doi.org/10.1007/978-3-030-59710-8_6.
Rajaraman S, Zamzmi G, Folio L, Alderson P, Antani S. Chest X-ray Bone Suppression for Improving Classification of Tuberculosis-Consistent Findings.  
Diagnostics. 2021; 11(5):840. https://doi.org/10.3390/diagnostics11050840
Zamzmi G, Rajaraman S, Antani S. UMS-Rep: Unified modality-specific representation for efficient medical image analysis. 
Informatics in Medicine Unlocked, Volume 24, 2021, 100571, ISSN 2352-9148, https://doi.org/10.1016/j.imu.2021.100571.
Kassim YM, Palaniappan K, Yang F, Poostchi M, Palaniappan N, Maude RJ, Antani S, Jaeger S. Clustering-Based Dual Deep Learning Architecture for Detecting Red Blood Cells in Malaria Diagnostic Smears. 
IEEE J Biomed Health Inform. 2021 May;25(5):1735-1746. doi: 10.1109/JBHI.2020.3034863. Epub 2021 May 11.
Robini MC, Yang F, Zhu Y. A stochastic approach to full inverse treatment planning for charged-particle therapy. 
J Glob Optim 77, 853–893 (2020). https://doi.org/10.1007/s10898-020-00902-2
Li Z, Wang X, Wang L, Ji W, Zhang M, Zhu Y, Yang F. UNet-ESPC-Cascaded Super-Resolution Reconstruction in Spectral CT. 
2020 15th IEEE International Conference on Signal Processing (ICSP).
Baik SH, Fung K-W, McDonald CJ. The mortality risk of Proton Pump Inhibitors in 1.9 Million US Seniors: an extended Cox survival analysis.  
Clin Gastroenterol Hepatol 2021. https://doi.org/10.1016/j.cgh.2021.01.014.
Mayer CS, Huser V. Computerized monitoring of COVID-19 trials, studies and registries in ClinicalTrials.gov registry. 
PeerJ. 2020 Oct 23;8:e10261. doi: 10.7717/peerj.10261.
Mayer CS, Williams N, Huser V. Analysis of data dictionary formats of HIV clinical trials. 
PLoS One. 2020 Oct 5;15(10):e0240047. doi: 10.1371/journal.pone.0240047.
Mayer CS, Williams N, Fung KW, Huser V. Evaluation of Research Accessibility and Data Elements of HIV Registries. 
Curr HIV Res. 2019;17(4):258-265. doi: 10.2174/1570162X17666190924195439.
Mayer CS, Williams N, Gold S, Fung KW, Huser V. Sharing of Individual Participant Data from Clinical Trials: General Comparison and HIV Use Case. 
AMIA Annu Symp Proc. 2020 Mar 4;2019:647-654.
McDonald CJ, Baik SH, Zheng Z, Amos L. A method for prioritizing risk groups for early SARS-CoV-2 vaccination, by the numbers. 
MedRxiv 2020:2020.12.18.20248504. https://doi.org/10.1101/2020.12.18.20248504.
Baik SH, McDonald CJ. Independent effects of 15 commonly prescribed drugs on all-cause mortality among US elderly patients with type 2 diabetes mellitus. 
BMJ Open Diabetes Res Care 2020;8:e000940. https://doi.org/10.1136/bmjdrc-2019-000940.
Pal A, Xue Z, Befano B, Rodriguez AC, Long L, Schiffman M, Antani SK. Deep Metric Learning for Cervical Image Classification. 
IEEE Access, vol. 9, pp. 53266-53275, 2021, doi: 10.1109/ACCESS.2021.3069346.
Bastola M, Locatis C, Fontelo P. Diagnostic Reliability of In-Person Versus Remote Dermatology: A Meta-Analysis. 
Telemed J E Health, 2021 Mar; 27(3): 247-250.
Rajaraman S, Zamzmi G, Folio L, Alderson P, Antani S. Improved TB classification using bone-suppressed chest radiographs. 
arXiv preprint arXiv:2104.04518 [eess.IV].
Rajaraman S, Folio LR, Dimperio J, Alderson PO, Antani SK. Improved Semantic Segmentation of Tuberculosis-Consistent Findings in Chest X-rays Using Augmented Training of Modality-Specific U-Net Models with Weak Localizations. 
Diagnostics (Basel). 2021 Mar 30;11(4):616. doi: 10.3390/diagnostics11040616.
Rajaraman S, Folio L, Dimperio J, Alderson P, Antani S. Training custom modality-specific U-Net models with weak localizations for improved Tuberculosis segmentation and localization. 
arXiv preprint arXiv:2102.10607 [cs.CV].
Sen N, Young L, Kim J, Sharma S, Lee A, Lee C. Fully Automated Algorithm to Detect Vascular Leakage in Uveitis. 
The 44th Virtual Annual Macula Society Meeting, ID 141, February, 2021.
Lu C, Payne A, Mork J. Proper filter usage to retrieve multiwords from the MEDLINE n-gram set: Reply to the Turki et al commentary "Enhancing filter-based parenthetic abbreviation extraction methods". 
Journal of the American Medical Informatics Association, Volume 28, Issue 3, March 2021, Page 670, https://doi.org/10.1093/jamia/ocaa313.
Kim J, Tran L. Ensemble Learning Based on Convolutional Neural Networks for the Classification of Retinal Diseases from Optical Coherence Tomography Images. 
2020 IEEE 33th International Symposium on Computer-Based Medical Systems (IEEE CBMS 2020), pp 535-540, Rochester, USA, July 2020.
Kim I, Misra D, Rodriguez L, Gill M, Liberton D, Almpani K, Lee JS, Antani S. Malocclusion Classification on 3D Cone-Beam CT Craniofacial Images Using Multi-Channel Deep Learning Models. 
2020 42nd Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), Montreal, QC, Canada, 2020, pp. 1294-1298, doi: 10.1109/EMBC44109.2020.9176672.
Misra D, Gill M, Lee JS, Antani S. Segmentation of Anterior Tissues in Craniofacial Cone-Beam CT Images. 
2020 IEEE 33rd International Symposium on Computer-Based Medical Systems (CBMS), Rochester, MN, USA, 2020, pp. 71-76, doi: 10.1109/CBMS49503.2020.00021.
Lu CJ, Payne A, Mork JG. The Unified Medical Language System SPECIALIST Lexicon and Lexical Tools: Development and applications. 
J Am Med Inform Assoc. 2020 May 29;27(10):1600-1605. doi: 10.1093/jamia/ocaa056.
Lu CJ, Payne A, Mork JG. Enhanced Features in the SPECIALIST Lexicon - Antonyms. 
AMIA 2020 Virtual Annual Symposium, November 14-18, 2020.
Yu H, Yang F, Rajaraman S, Ersoy I, Moallem G, Poostchi M, Palaniappan K, Antani S, Maude RJ, Jaeger S. Malaria Screener: a smartphone application for automated malaria screening.  
BMC Infect Dis. 2020 Nov 11;20(1):825. doi: 10.1186/s12879-020-05453-1.
Rajaraman S, Sornapudi S, Alderson PO, Folio LR, Antani SK. Analyzing inter-reader variability affecting deep ensemble learning for COVID-19 detection in chest radiographs. 
PLoS ONE 15(11): e0242301.
Fung KW, Xu J, Bodenreider O. The new International Classification of Diseases 11th edition – A comparative analysis with ICD-10 and ICD-10-CM. 
J Am Med Inform Assoc. 2020 May 1;27(5):738-746. doi: 10.1093/jamia/ocaa030.
Demner-Fushman D, Cohen KB, Ananiadou S, Tsujii J. Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing, 2020. 
Journal of the American Medical Informatics Association, 2020: 27 (2), 194-201.
Demner-Fushman D, Mrabet Y, Ben Abacha A. Consumer health information and question answering: helping consumers find answers to their health-related information needs. Journal of the American Medical Informatics Association. 
Journal of the American Medical Informatics Association, 2020: 27 (2), 194-201.
Goodwin T, Demner-Fushman D. A customizable deep learning model for nosocomial risk prediction from critical care notes with indirect supervision. 
Journal of the American Medical Informatics Association, 2020: 27 (4), 567-576.
Voorhees EM, Alam T, Bedrick S, Demner-Fushman D, Hersh WR, Lo K, Roberts K, Soboroff I, Wang LL. TREC-COVID: Constructing a Pandemic Information Retrieval Test Collection. 
CoRR abs/2005.04474 (2020)
Savery M, Ben Abacha A, Gayen S, Demner-Fushman D. Question-Driven Summarization of Answers to Consumer Health Questions. 
arXiv preprint arXiv:2005.09067.
Datta S, Rodriguez L, Shooshan SE, Demner-Fushman D, Roberts K. Understanding Spatial Language in Radiology: Representation Framework, Annotation, and Spatial Relation Extraction from Chest X-ray Reports using Deep Learning. 
Journal of Biomedical Informatics, 103473.
Sarrouti M, Ben Abacha A, Demner-Fushman D. Visual Question Generation from Radiology Images. 
Proceedings of the First Workshop on Advances in Language and Vision Research.
Rajaraman S, Siegelman J, Alderson PO, Folio LS, Folio LR, Antani SK. Iteratively Pruned Deep Learning Ensembles for COVID-19 Detection in Chest X-Rays. 
IEEE Access, vol. 8, pp. 115041-115050, 2020, doi: 10.1109/ACCESS.2020.3003810
Rajaraman S, Sornapudi S, Alderson PO, Folio LR, Antani SK. Interpreting Deep Ensemble Learning through Radiologist Annotations for COVID-19 Detection in Chest Radiographs. 
medRxiv 2020.07.15.20154385; doi: https://doi.org/10.1101/2020.07.15.20154385.
Zheng Q, Lu Y, Lure F, Jaeger S, Lu P. Clinical and radiological features of novel coronavirus pneumonia. 
Journal of X-Ray Science and Technology, vol. 28, no. 3, pp. 391-404, 2020.
Jaeger S. The Golden Ratio of Learning and Momentum. 
arXiv:2006.04751 [cs.LG], 2020.
Roberts K, Alam T, Bedrick S, Demner-Fushman D, Lo K, Soboroff I, Voorhees E, Wang LL, Hersh WR. TREC-COVID: Rationale and Structure of an Information Retrieval Shared Task for COVID-19. 
Journal of the American Medical Informatics Association, 2020.
Guo P, Xue Z, Mtema Z, Yeates K, Ginsburg O, Demarco M, Long LR, Schiffman M, Antani SK. 2. Ensemble Deep Learning for Cervix Image Selection toward Improving Reliability in Automated Cervical Precancer Screening. 
Diagnostics (Basel) 2020 Jul 3;10(7):451.
Alzamzmi GA, Hsu L, Li W, Sachdev V, Antani SK. Harnessing Machine Intelligence in Automatic Echocardiogram Analysis: Current Status, Limitations, and Future Directions. 
IEEE Reviews in Biomedical Engineering, doi: 10.1109/RBME.2020.2988295
Alzamzmi GA, Hsu L, Li W, Sachdev V, Antani SK. Fully automated spectral envelope and peak velocity detection from Doppler echocardiography images. 
Proc. SPIE 11314, Medical Imaging 2020: Computer-Aided Diagnosis, 113144G (16 March 2020); https://doi.org/10.1117/12.2551183
Alzamzmi GA, Hsu L, Li W, Sachdev V, Antani SK. Echo Doppler Flow Classification and Goodness Assessment with Convolutional Neural Networks. 
2019 18th IEEE International Conference On Machine Learning And Applications (ICMLA), Boca Raton, FL, USA, 2019, pp. 1744-1749, doi: 10.1109/ICMLA.2019.00283
Jain SK, Andronikou S, Goussard P, Antani SK, Gomez-Pastrana D, Delacour C, Starke JR, Ordonez AA, Jean-Philippe P, Browning RS, Perez-Velez C. Advanced imaging tools for childhood tuberculosis: potential applications and research needs. 
The Lancet Infectious Diseases. DOI:https://doi.org/10.1016/S1473-3099(20)30177-8
Alzamzmi GA, Rajaraman S, Antani SK. Unified Representation Learning for Efficient Medical Image Analysis. 
arXiv:2006.11223 [cs.CV] Under Review
Alzamzmi GA, Rajaraman S, Antani SK. Accelerating Super-Resolution and Visual Task Analysis in Medical Images. 
Appl. Sci. 2020, 10, 4282.
Xue Z, Novetsky A, Einstein M, Marcus J, Befano B, Guo P, Demarco M, Wenzenten N, Long LR, Schiffman M, Antani SK. A demonstration of automated visual evaluation of cervical images taken with a smartphone camera. 
Int J Cancer. 2020 Apr 30.
Savery M, Rogers W, Pillai M, Mork JG, Demner-Fushman D. Chemical Entity Recognition for MEDLINE Indexing. 
AMIA 2020 Virtual Informatics Summit, 2020.
Rajaraman S, Siegelman J, Alderson PO, Folio LS, Folio LR, Antani SK. Iteratively Pruned Deep Learning Ensembles for COVID-19 Detection in Chest X-rays. 
2020, [Online].
Ionescu B, Müller H, Péteri R, Dang-Nguyen DT, Zhou L, Piras L, Riegler M, Halvorsen P, Tran MT, Lux M, Gurrin C, Chamberlain J, Clark A, Campello A, de Herrera AGS, Ben Abacha A, Datla VV, Hasan SA, Liu J, Demner-Fushman D, Pelka O, Friedrich CM, Cid YD, Kozlovski S, Liauchuk V, Kovalev V, Berari P, Brie P, Fichou D, Dogariu M, Stefan L, Constantin M. ImageCLEF 2020: Multimedia Retrieval in Lifelogging, Medical, Nature, and Internet Applications. 
ImageCLEF 2020: Multimedia Retrieval in Lifelogging, Medical, Nature, and Internet Applications. ECIR (2) 2020: 533-541.
Sornapudi S, Brown G, Xue Z, Long LR, Allen L, Antani SK. Comparing Deep Learning Models for Multi-cell Classification in Liquid- based Cervical Cytology Image. 
AMIA Annu Symp Proc. 2019; 2019: 820–827.
Guo P, Xue Z, Long LR, Antani SK. Anatomical landmark segmentation in uterine cervix images using deep learning. 
Proc. SPIE 11318, Medical Imaging 2020: Imaging Informatics for Healthcare, Research, and Applications, 1131810 (2 March 2020)
Zou J, Xue Z, Brown G, Long LR, Antani SK. Deep learning for nuclei segmentation and cell classification in cervical liquid based cytology. 
Proc. SPIE 11318, Medical Imaging 2020: Imaging Informatics for Healthcare, Research, and Applications, 1131811 (2 March 2020); doi: 10.1117/12.2549547
Yang F, Quizon N, Silamut K, Maude RJ, Jaeger S, Antani SK. Cascading YOLO: Automated Malaria Parasite Detection for Plasmodium Vivax in Thin Blood Smears. 
Proc. SPIE 11314, Medical Imaging 2020: Computer-Aided Diagnosis, 113141Q (16 March 2020); https://doi.org/10.1117/12.2549701
Rajaraman S, Antani SK. Modality-Specific Deep Learning Model Ensembles Toward Improving TB Detection in Chest Radiographs. 
IEEE Access, vol. 8, pp. 27318-27326, 2020.
Guo P, Xue Z, Long LR, Antani SK. Cross-Dataset Evaluation of Deep Learning Networks for Uterine Cervix Segmentation. 
Diagnostics (Basel). 2020 Jan 14;10(1). pii: E44. doi: 10.3390/diagnostics10010044.
Sarrouti M, Quatik EL, Alaoui S. SemBioNLQA: A semantic biomedical question answering system for retrieving exact and ideal answers to natural language questions. 
Artif Intell Med. 2020 Jan;102:101767. doi: 10.1016/j.artmed.2019.101767. Epub 2019 Nov 28.
Zeiss CJ, Donwook S, Vander Wyk B, Beck AP, Zatz N, Sneiderman CA, Kilicoglu H. Menagerie: A text-mining tool to support animal-human translation in neurodegeneration research. 
PLoS One. 2019 Dec 17;14(12):e0226176. doi: 10.1371/journal.pone.0226176. eCollection 2019.
Goodwin T, Demner-Fushman D. Deep Learning from Incomplete Data: Detecting Imminent Risk of Hospital-acquired Pneumonia in ICU Patients. 
Proceedings of the AMIA 2019 Annual Symposium, Washington, DC, USA, November 17-20, 2019.
Ben Abacha A, Demner-Fushman D. A Question-Entailment Approach to Question Answering. 
arXiv:1901.08079.
Ben Abacha A, Hasan SA, Datls W, Liu J, Demner-Fushman D, Muller H. VQA-Med: Overview of the medical visual question answering task at imageclef 2019. 
CEUR Workshop Proceedings, 9-12, 2019.
Goodwin T, Demner-Fushman D, Fung K, Do P. Overview of the TAC 2019 Track on Drug-Drug Interaction Extraction from Drug Label. 
Proceedings of the Text Analysis Conference (TAC) 20 19, Gathersburg, MD, USA, November 12-13, 2019.
Mrabet Y, Demner-Fushman D. On Agreements in Visual Understanding. 2019 Conference on Neural Information Processing Systems. 
2019 Conference on Neural Information Processing Systems, December 8-14, 2019. Vancouver, Canada.
Cheng P, Lu P, Wang P, Zhou W, Yu W, Jaeger S, Li J, Wu T, Ke X, Zheng B, Antani SK, Candemir S, Quan S, Lure F, Li H, Guo L. Applying Deep Learning and Radiomics to Determine Biological Lung and Heart Age from Chest Radiographs. 
Chinese Congress of Radiology.
Wang X, Guan Y, Lu P, Cheng G, Zhou W, Jaeger S, Zhen B, Antani SK, Yin X, Yu W, Guo L, Quan S, Lure F, Hurt D, Gabrielian A, Li H, Ke X. Screening of Tuberculosis in a TB High-burden Large Rural Region in China with Deep Learning Multi-modality Artificial Intelligence. 
Chinese Congress of Radiology.
Yu H, Yang F, Silamut R, Maude S, Jaeger S, Antani SK. Automatic Blood Smear Analysis with Artificial Intelligence and Smartphones. 
ASTMH 68th Annual Meeting, Washington DC, Nov. 20-24, 2019.
Rae A, Savery M, Mork JG, Demner-Fushman D. A High Recall Classifier for Selecting Articles for MEDLINE Indexing. 
AMIA Fall Symposium, 2019.
Savery M, Huston M, Mork JG, Printseva O, Rae A, Schmidt S, Demner-Fushman D. Evaluation of System for Selective Indexing Classification. 
AMIA Fall Symposium, 2019.
Lu C, Payne A, Demner-Fushman D. Classification Types: A New Feature in the SPECIALIST Lexicon. 
MIA 2019 Annual Symposium, Washington, DC, November 16-20, 2019.
Mao Y, Fung K, Demner-Fushman D. Drug-drug Interaction Extraction via Transfer Learning. 
AMIA Fall Symposium, 2019.
Lu C, Aronson AR, Shooshan SE, Demner-Fushman D. Spell checker for consumer language (CSpell). 
Journal of the American Medical Informatics Association, Volume 26, Issue 3, 1 March 2019, Pages 211-218, https://doi.org/10.1093/jamia/ocy171 21 January 2019 (Editor's Choice)
Lu C, Payne A, Demner-Fushman D. Classification Types: A New Feature in the SPECIALIST Lexicon. 
AMIA Fall Symposium, 2019.
Lure F, Jaeger S, Cheng G, Li H, Lu P, Yu W, Kung J, Guan Y. Applying Multi-modality Artificial Intelligence for Screening of Tuberculosis in a TB High-burden Large Rural Region in China. 
TBScience, 50th Union World Conference on Lung Health, Hyderabad, India.
Yang F, Poostchi M, Silamut K, Maude RJ, Jaeger S, Thoma G. Automated Parasite Classification of Malaria on Thick Blood Smears. 
ASTMH 67th Annual Meeting, New Orleans, LA, Oct. 28 – Nov. 1, 2018.
Goodwin T, Demner-Fushman D. Bridging the Knowledge Gap: Enhancing Question Answering with World and Domain Knowledge. 
arXiv preprint arXiv:1910.07429
Yang F, Yu H, Silamut K, Maude RJ, Jaeger S, Antani SK. Parasite Detection in Thick Blood Smears Based on Customized Faster-RCNN. 
Proceedings of AIPR2019, Washington DC, USA, Oct 15-17, 2019.
Yang F, Yu H, Silamut K, Maude R, Jaeger S, Antani SK. Smartphone-Supported Malaria Diagnosis Based on Deep Learning. 
Proceedings of 10th Workshop on Machine Learning in Medical Imaging (MLMI 2019) in conjunction with MICCAI, Shenzhen, China, Oct 13-17, 2019.
Zou J, Antani SK, Thoma G. Unified Deep Neural Network for Segmentation and Labeling of Multi-Panel Biomedical Figures. 
Journal of the Association for Information Science and Technology (JASIST), 2019
Zou J. Unified Deep Neural Network for Segmentation and Labeling of Multi-Panel Biomedical Figures. 
Journal of the Association for Information Science and Technology (JASIST), 2019
Yang F, Poostchi M, Yu H, Zhou Z, Silamut K, Yu J, Maude RJ, Jaeger S, Antani S. . Deep learning for smartphone-based malaria parasite detection in thick blood smears. 
IEEE J Biomed Health Inform. 2020 May;24(5):1427-1438. doi: 10.1109/JBHI.2019.2939121. Epub 2019 Sep 23.
Rosemblat G, Fiszman, M, Shin D, Kilicoglu H. Towards a characterization of apparent contradictions in the biomedical literature using context analysis. 
Journal of Biomedical Informatics. 2019. In Press. https://doi.org/10.1016/j.jbi.2019.103275.
Vasilakes J, Fan Y, Rizvi R, Bompelli A, Bodenreider O, Zhang R. Normalizing Dietary Supplement Product Names Using the RxNorm Model. 
Stud Health Technol Inform. 2019 Aug 21;264:408-412. doi: 10.3233/SHTI190253.
Ben Abacha A, Mrabet Y, Sharp M, Goodwin T, Shooshan S, Demner-Fushman D. Bridging the Gap Between Consumers’ Medication Questions and Trusted Answers. 
Stud Health Technol Inform. 2019 Aug 21;264:25-29. doi: 10.3233/SHTI190176.
Kho SU, Sheth A, Bodenreider O. Automatic Identification of Individual Drugs in Death Certificates. 
Stud Health Technol Inform. 2019 Aug 21;264:183-187. doi: 10.3233/SHTI190208.
Ben Abacha A, Mrabet Y, Sharp M, Goodwin T, Shooshan S, Demner-Fushman D. Bridging the Gap Between Consumers' Medication Questions and Trusted Answers. 
Studies in health technology and informatics, 264, pp.25-29, 2019.
Rajaraman S, Candemir S, Xue Z, Alderson P, Thoma G, Antani SK. A Novel Stacked Model Ensemble for Improved TB Detection in Chest Radiographs. 
In Santosh KC et al. (Eds.). Medical Imaging: Artificial Intelligence, Image Recognition, and Machine Learning Techniques. (pp. 1-26). New York, NY: CRC Press, Taylor & Francis Group.
Datta S, Si Y, Rodriguez L, Shooshan S, Demner-Fushman D, roberts K. Understanding Spatial Language in Radiology: Representation Framework, Annotation, and Spatial Relation Extraction from Chest X-ray Reports using Deep Learning. 
arXiv preprint arXiv:1908.04485, 2019.
Divita G, Rosemblat G, Browne AC. Building a medical Spanish lexicon. 
AMIA Annu Symp Proc. 2007 Oct 11:941.
Ben Abacha A, Shivade C, Demner-Fushman D. Overview of the MEDIQA 2019 Shared Task on Textual Inference, Question Entailment and Question Answering. 
Proceedings of the 18th BioNLP Workshop and Shared Task, Florence, Italy, August 1, 2019.
Demner-Fushman D, Cohen KB, Ananiadou S, Tsujii J. Sesame Street at BioNLP 2019. 
Proceedings of the BioNLP 2019 workshop.
Ben Abacha A, Shivade C, Demner-Fushman D. Overview of the MEDIQA 2019 Shared Task on Textual Inference, Question Entailment and Question Answering. . 
Proceedings of the BioNLP 2019 workshop.
Ben Abacha A, Demner-Fushman D. On the Summarization of Consumer Health Questions. 
ACL 2019, Florence, Italy.
Xue Y, Zhou Q, Ye J, Long LR, Antani SK, Cornwell C, Xue Z, Huang X. Synthetic Augmentation and Feature-based Filtering for Improved Cervical Histopathology Image Classification. 
ArXiv, abs/1907.10655.
Ganesan P, Xue Z, Singh S, Long LR, Ghoraani B, Antani SK. Performance Evaluation of a Generative Adversarial Network for Deblurring Mobile-phone Cervical Images. 
Proc. IEEE Engineering in Medicine and Biology Conference (EMBC), Berlin, Germany, 23 – 27 July 2019. pp. 4487 – 4490.
Rajaraman S, Sornapudi S, Kohli M, Antani SK. Assessment of an ensemble of machine learning models toward abnormality detection in chest radiographs. 
Proc. IEEE Engineering in Medicine and Biology Conference (EMBC), Berlin, Germany, 23 – 27 July 2019. pp. 3689 – 3692.
Ganesan P, Rajaraman S, Long LR, Ghoraani B, Antani SK. Assessment of Data Augmentation Strategies Toward Performance Improvement of Abnormality Classification in Chest Radiographs. 
Proc. IEEE Engineering in Medicine and Biology Conference (EMBC), Berlin, Germany, 23 – 27 July 2019. pp. 841 – 844.
Rajaraman S, Antani SK. Visualizing Salient Network Activations in Convolutional Neural Networks for Medical Image Modality Classification. . 
Santosh K., Hegadi R. (eds) Recent Trends in Image Processing and Pattern Recognition. RTIP2R 2018. Communications in Computer and Information Science, vol 1036. Springer, Singapore
Kim J, Tran L, Chew E, Antani SK. Optic Disc and Cup Segmentation for Glaucoma Characterization Using Deep Learning. 
2019 IEEE 32th International Symposium on Computer-Based Medical Systems (CBMS), pp 489-494, Cordoba, Spain, June 2019.
Ben Abacha A, Demner-Fushman D. On the Summarization of Consumer Health Questions. 
Proceedings of the 57th Annual Meeting of the Association for Computational Linguistics, Florence, Italy 2019.
Allam A, Magy M, Thoma G, Krauthammer M. Neural networks versus Logistic regression for 30 days all-cause readmission prediction. . 
Sci Rep. 2019 Jun 26;9(1):9277. doi: 10.1038/s41598-019-45685-z.
Chowdhuri S, McCrea S, Demner-Fushman D, Overby TC. Extracting Biomedical Terms from Postpartum Depression Online Health Communities. 
AMIA Jt Summits Transl Sci Proc. 2019 May 6;2019:592-601.
Zhang XA, Yates A, Vasilevsky N, Gourdine JP, Callahan TJ, Carmody LC, Danis D, Joachimiak MP, Ravanmehr V, Pfaff ER, Champion J, Robasky K, Xu H, Fecho K, Walton NA, Zhu RL, Ramsdill J, Mungall CJ, Kohler S, Haendel MA, McDonald CJ, Vreeman DJ, Peden DB, Bennett TD, Feinstein JA, Martin B, Stefanski AL, Hunter LE, Chute CG, Robinson PN. Semantic integration of clinical laboratory tests from electronic health records for deep phenotyping and biomarker discovery. 
NPJ Digit Med. 2019;2. pii: 32. doi: 10.1038/s41746-019-0110-4. Epub 2019 May 2.
Kesav N, Yang Q, Losert W, Kim J, Jaeger S, Sen HN. Novel automated processing techniques of fluorescein angiography (FA) images in patients with Uveitis. 
Annual Meeting of the Association for Research in Vision and Ophthalmology (ARVO).
Ionescu B, Muller H, Peteri R, Dang-Nguyen DT, Piras L, Riegler M, Tran MT, Lux M, Gurrin C, Cid YD, Liauchuk V, Kovalev V, Ben Abacha A, Hasan SA, Datla V, Liu J, Demner-Fushman D, Pelka O, Friedrich CM, Chamberlain J, Clark C, de Herrera AGS, Garcia N, Kavallieratou E, del Blanco CR, Rodriguez CC, Vasillopoulos N, Karampidis K. Multimedia retrieval in medicine, lifelogging, security and nature. 
International Conference of the Cross-Language Evaluation Forum for European Languages, Springer, Cham, 358-386, 2019
Kim I, Rajaraman S, Antani SK. Visual Interpretation of Convolutional Neural Network Predictions in Classifying Medical Image Modalities. 
Diagnostics (Basel). 2019 Apr 3;9(2). pii: E38. doi: 10.3390/diagnostics9020038.
Guo P, Singh S, Xue Z, Long LR, Antani SK. Deep Learning for Assessing Image Focus for Automated Cervical Cancer Screening. 
2019 IEEE EMBS International Conference on Biomedical & Health Informatics (BHI) DOI: 10.1109/BHI.2019.8834495.
Kim J, Tran L, Chew E, Antani SK, Thoma GR. Optic Disc Segmentation in Fundus Images Using Deep Learning. 
SPIE Medical Imaging 2019: Imaging Informatics for Healthcare, Research, and Applications, Vol. 10954, San Diego, USA, February 2019.
Ben Abacha A, Demner-Fushman D. On the Role of Question Summarization and Information Source Restriction in Consumer Health Question Answering. 
Proceedings of the AMIA 2019 Informatics Summit, San Francisco, CA, USA, March 25-28, 2019.
Goodwin T, Harabagiu S. The Impact of Inferring Treatments on Information Retrieval for Precision Medicine. 
Proceedings of the AMIA 2019 Informatics Summit, San Francisco, CA, USA, March 25-28, 2019.
Zolnoori M, Fung K, Patrick DB, Fontelo P, Kharrazi H, Faiola A, Shah ND, Shirley WYS, Eldredge CE, Luo J, Conway M, Zhu J, Park SK, Xu K, Moayyed H. The PsyTAR dataset: From patients generated narratives to a corpus of adverse drug events and effectiveness of psychiatric medications. . 
Data Brief. 2019 Mar 15;24:103838. doi: 10.1016/j.dib.2019.103838. eCollection 2019 Jun.
Rajaraman S, Candemir S, Thoma G, Antani SK. Visualizing and explaining deep learning predictions for pneumonia detection in pediatric chest radiographs. 
Proc. SPIE 10950, Medical Imaging 2019: Computer-Aided Diagnosis, 109500S (13 March 2019); doi: 10.1117/12.2512752.
Rodriguez L, Demner-Fushman D. Finding Understudied Disorders Potentially Associated with Maternal Morbidity and Mortality. 
AMIA Informatics Summit, March 2019.
Kilicoglu H, Peng Z, Tafreshi S, Tran T, Rosemblat G, Schneider J. Confirm or Refute?: A Comparative Study on Citation Sentiment Classification in Clinical Research Publications. 
J Biomed Inform. 2019 Feb 9:103123. doi: 10.1016/j.jbi.2019.103123.
Demner-Fushman D. Clinical, Consumer Health, and Visual Question Answering. 
Springer Nature Switzerland AG 2019. J. A. Lossio-Ventura et al. (Eds.): SIMBig 2018, CCIS 898, pp. 1–6, 2019.
Candemir S, Antani SK. A review on lung boundary detection in chest X-rays. 
Int J Comput Assist Radiol Surg. 2019 Feb 7. doi: 10.1007/s11548-019-01917-1.
Rodriguez L, Demner-Fushman D. Finding Understudied Disorders Potentially Associated with Maternal Morbidity and Mortality. 
AJP Rep. 2019 Jan;9(1):e36-e43. doi: 10.1055/s-0039-1683363. Epub 2019 Mar 4.
Ben Abacha A, Demner-Fushman D. On the role of question summarization and information source restriction in consumer health question answering. . 
In Proceedings of the AMIA 2019 Informatics Summit, San Francisco, CA, USA, 2019.
Zolnoori M, Fung K, Patrick TB, Fontelo P, Kharrazi H, Faiola A, Wu YSS, Eldredge CE, Luo J, Conway M, Zhu J, Park SK, Xu K, Moayyed H, Goudarzvand S. A systematic approach for developing a corpus of patient reported adverse drug events: A case study for SSRI and SNRI medications. 
J Biomed Inform. 2019 Feb;90:103091. doi: 10.1016/j.jbi.2018.12.005. Epub 2019 Jan 4.
Lu C, Aronson, AR, Shooshan SE, Demner-Fushman D. Spell checker for consumer language (CSpell). 
J Am Med Inform Assoc. 2019 Jan 21. doi: 10.1093/jamia/ocy171. [Epub ahead of print]
Hu L, Bell D, Antani SK, Xue Z, Yu K, Horning MP, Gachuhi N, Wilson B, Jaiswal MS, Befano B, Long LR, Herrero R, Einstein MH, Burk RD, Demarco M, Gage JC, Wentzensen N, Schiffman M. An Observational Study of Deep Learning and Automated Evaluation of Cervical Images for Cancer Screening. 
J Natl Cancer Inst. 2019 Jan 10. doi: 10.1093/jnci/djy225
Scarton LA, Wang L, Kilicoglu H, Jahries M, Del Fiol M. Expanding vocabularies for complementary and alternative medicine therapies. 
Int J Med Inform. 2019 Jan;121:64-74. doi: 10.1016/j.ijmedinf.2018.11.009. Epub 2018 Nov 22.
Rindflesch TC, Blake CL, Cairelli MJ, Fiszman M, Zeiss CJ, Kilicoglu H. Investigating the role of interleukin-1 beta and glutamate in inflammatory bowel disease and epilepsy using discovery browsing. 
J Biomed Semantics. 2018 Dec 27;9(1):25. doi: 10.1186/s13326-018-0192-y.
Jaeger S, Juarez-Espinosa OH, Candemir S, Poostchi M, Yang F, Kim L, Ding M, Folio LR, Antani SK, Gabrielian A, Hurt D, Rosenthal A, Thoma GR. Detecting drug-resistant tuberculosis in chest radiographs. 
Int J Comput Assist Radiol Surg. 2018 Dec;13(12):1915-1925. doi: 10.1007/s11548-018-1857-9. Epub 2018 Oct 3.
Thoma, GR. Where we’ve been.. And where we’re going. 
Talk given by George Thoma at his retirement.
Lau JJ, Gayen S, Ben Abacha A, Demner-Fushman D. A dataset of clinically generated visual questions and answers about radiology images. 
Sci Data. 2018 Nov 20;5:180251. doi: 10.1038/sdata.2018.251.
Demner-Fushman D, Fung K, Do P, Boyce R, Goodwin T. Overview of the TAC 2018 Drug-Drug Interaction Extraction from Drug Labels Track. 
Proceedings of the Text Analysis Conference (TAC) 2018, Gaithersburg, MD, USA, November 13-14, 2018.
Peters TM, Linte CA, Yaniv Z, Williams J. Mixed and Augmented Reality in Medicine. 
CRC Press.
Lu C, Demner-Fushman D. Improving Spelling Correction with Consumer Health Terminology Improving Spelling Correction with Consumer Health Terminology. 
AMIA 2018 Annual Symposium, San Francisco, CA, November 3-7, 2018, p. 2053.
Lu C, Demner-Fushman D. Improving Spelling Correction with Consumer Health Terminology . 
AMIA 2018 Annual Symposium, San Francisco, CA, November 3-7, 2018, p. 2053.
Candemir S, Rajaraman S, Thoma GR, Antani SK. Deep Learning for Grading Cardiomegaly Severity in Chest X-rays: An Investigation. 
Proc. IEEE Life Sciences Conference (LSC 2018), Montreal, Quebec, Canada, 28 – 30 October 2018. pp. 109-113.
Yaniv Z, Güler Ö, Gong RH. Cost Effective Simulation; A Mixed Reality Approach. 
Ch. 10 in Mixed and Augmented Reality in Medicine.
Ben-Zikri Y, Yaniv Z, Baum K, Linte C. A Marker-Free Registration Method for Standing X-ray Panorama Reconstruction for Hip-Knee-Ankle Axis Deformity Assessment, 7:4, 464-478, DOI: 10.1080/21681163.2018.1537859 
Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization
Dhoot R, Humphrey JM, O'Meara P, Gardner A, McDonald CJ, Ogot K, Antani SK, Abuya J, Kohli M. Implementing a mobile diagnostic unit to increase access to imaging and laboratory services in western Kenya. 
BMJ Glob Health. 2018 Oct 8;3(5):e000947. doi: 10.1136/bmjgh-2018-000947. eCollection 2018.
Poostchi M, Ilker E, McMenamin K, Gordon E, Palaniappan N, Pierce S, Maude RJ, Bansal A, Srinivasan P, Miller L, Palaniappan K, Thoma GR, Jaeger S. Malaria parasite detection and cell counting for human and mouse using thin blood smear microscopy. 
J Med Imaging (Bellingham). 2018 Oct;5(4):044506. doi: 10.1117/1.JMI.5.4.044506. Epub 2018 Dec 12.
Zolnoori M, Fung K, Fontelo P, Kharrazi H, Faiola A, Wu YSS, Stoffel V, Patrick T. Identifying the Underlying Factors Associated With Patients' Attitudes Toward Antidepressants: Qualitative and Quantitative Analysis of Patient Drug Reviews. 
JMIR Ment Health. 2018 Sep 30;5(4):e10726. doi: 10.2196/10726.
Fontelo P, Liu F. A review of recent publication trends from top publishing countries. 
Syst Rev. 2018 Sep 27;7(1):147. doi: 10.1186/s13643-018-0819-1.
Sylim P, Liu F, Marcelo A, Fontelo P. Blockchain Technology for Detecting Falsified and Substandard Drugs in Distribution: Pharmaceutical Supply Chain Intervention. 
JMIR Res Protoc. 2018 Sep 13;7(9):e10163. doi: 10.2196/10163.
Yang F, Yu H, Poostchi M, Silamut K, Maude RJ, Jaeger S. Smartphone-Supported Automated Malaria Parasite Detection. 
SIIM conference on Machine Intelligence in Medical Imaging, 2018.
Ben Abacha A, Gayen S, Lau JJ, Rajaraman S, Demner-Fushman D. NLM at ImageCLEF 2018 Visual Question Answering in the Medical Domain. . 
CLEF2018 Working Notes. CEUR Workshop Proceedings, Avignon, France, CEUR-WS.org (September 10-14 2018).
Jaeger S, Antani SK, Rajaraman S, Yang F, Yu H. Malaria Screening: Research into Image Analysis and Deep Learning. 
Report to the Board of Scientific Counselors September 2018.
Beare R, Lowekamp B, Yaniv Z. Image Segmentation, Registration and Characterization in R with SimpleITK. 
J Stat Softw. 2018 Aug;86. pii: 8. doi: 10.18637/jss.v086.i08. Epub 2018 Sep 4.
McDonald CJ, Maglott D, Abhyankar S, Goodwin RM, Kanduru A, Lu S, Lynch P, Vreeman D, Wang Y, Wood G. US Realm, Chapter 5, Use Case – Clinical Genomics Results Reporting. 
in HL7 Version 2.5.1 Implementation Guide: Lab Results Interface (LRI), DTSU3. HL7 International (Ann Arbor).
McDonald CJ, Maglott D, Abhyankar S, Goodwin RM, Kanduru A, Lu S, Lynch P, Vreeman D, Wang Y, Wood G. US Realm, Chapter 14, Use Case – Clinical Genomics Code Systems. 
in HL7 Version 2.5.1 Implementation Guide: Lab Results Interface (LRI), DTSU3. HL7 International (Ann Arbor).
Rae A, Kim J, Le DX, Thoma GR. Main Content Detection in HTML Journal Articles. 
DocEng ’18: ACM Symposium on Document Engineering 2018, August 28–31, 2018, Halifax, NS, Canada. ACM, New York, NY, USA, 4 pages. https://doi.org/10.1145/3209280.3229115
Vajda S, Karargyris A, Jaeger S, Santosh KC, Candemir S, Xue Z, Antani SK, Thoma GR. Feature Selection for Automatic Tuberculosis Screening in Frontal Chest Radiographs. 
J Med Syst. 2018 Jun 29;42(8):146. doi: 10.1007/s10916-018-0991-9.
Bodenreider O, Cornet R, Vreeman DJ. Recent Developments in Clinical Terminologies - SNOMED CT, LOINC, and RxNorm. 
Yearb Med Inform. 2018 Aug;27(1):129-139. doi: 10.1055/s-0038-1667077. Epub 2018 Aug 29.
Rajaraman S, Silamut K, Hossain MA, Ersoy I, Maude RJ, Jaeger S, Thoma GR, Antani SK. Understanding the learned behavior of customized convolutional neural networks toward malaria parasite detection in thin blood smear images. 
J Med Imaging (Bellingham). 2018 Jul;5(3):034501. doi: 10.1117/1.JMI.5.3.034501. Epub 2018 Jul 18.
Xue Z, Long LR, Jaeger S, Folio L, Thoma GR. Extraction of Aortic Knuckle Contour in Chest Radiographs Using Deep Learning. 
EMBC 2018.
Rajaraman S, Candemir S, Xue Z, Alderson P, Kohli M, Abuya J, Thoma GR, Antani SK. A novel stacked generalization of models for improved TB detection in chest radiographs. 
Proc. IEEE Engineering in Medicine and Biology Conference (EMBC 2018), Honolulu, Hawaii, 2018. pp. 718-721.
Kim I, Thoma GR. Automated Identification of Potential Conflict-of-Interest in Biomedical Articles Using Hybrid Deep Neural Network. 
Proc. 14th Int’l Conf. Machine Learning and Data Mining (MLDM 2018), LNAI 10934, pp. 99-112, Newark, NJ, July 2018.
Thamizhvani TR, Lakshmanan S, Rajaraman S. Mobile application-based computer-aided diagnosis of skin tumours from dermal images. 
The Imaging Science Journal, 66:6, 382-391, 2018, DOI: 10.1080/13682199.2018.1492682
Xue Z, Rajaraman S, Long LR, Antani SK, Thoma GR. Gender Detection from Spine X-ray Images Using Deep Learning. 
Proc. IEEE International Symposium on Computer-Based Medical Systems (CBMS), Karlstad, Sweden, 2018. pp. 54-58, DOI:10.1109/CBMS.2018.00017.
Kim I, Thoma GR. Automated Identification of Potential Conflict-of-Interest in Biomedical Articles Using Hybrid Deep Neural Network. 
Proc. 14th Int’l Conf. Machine Learning and Data Mining (MLDM 2018), LNAI 10934, pp. 99-112, Newark, NJ, July 2018.
Kilicoglu H, Rosemblat G, Malicki M, Ter Riet G. Automatic recognition of self-acknowledged limitations in clinical research literature. 
J Am Med Inform Assoc. 2018 Jul 1;25(7):855-861. doi: 10.1093/jamia/ocy038.
Yao S, Yu H, AliAkbarpour H, Seetharaman G, Palaniappan K. EpiX: A 3D Measurement Tool for Heritage, Archeology, and Aerial Photogrammetry. 
Heritage Preservation, pp. 47-66, 2018.
Yaniv Z, Lowekamp B, Johnson HJ, Beare R. SimpleITK Image-Analysis Notebooks: a Collaborative Environment for Education and Reproducible Research. 
J Digit Imaging. 2018 Jun;31(3):290-303. doi: 10.1007/s10278-017-0037-8.
Goss FR, Lai KH, Topaz M, Acker WW, Kowalski L, Plasek JM, Blumenthal KG, Seger DL, Slight SP, Fung KW, Chang FY, Bates DW, Zhou L. A value set for documenting adverse reactions in electronic health records. 
J Am Med Inform Assoc. 2018 Jun 1;25(6):661-669. doi: 10.1093/jamia/ocx139.
Gartrell K, Brennan CW, Wallen GR, Liu F, Smith KG, Fontelo P. Clinicians' perceptions of usefulness of the PubMed4Hh mobile device application for clinical decision making at the point of care: a pilot study. 
BMC Med Inform Decis Mak. 2018 May 8;18(1):27. doi: 10.1186/s12911-018-0607-9.
Sornapudi S, Stanley RJ, Stoecker WV, Almubarak H, Long LR, Antani SK, Thoma GR, Zuna R, Frazier SR. Deep Learning Nuclei Detection in Digitized Histology Images by Superpixels. 
J Pathol Inform. 2018 Mar 5;9:5. doi: 10.4103/jpi.jpi_74_17. eCollection 2018.
Fernandez-Repollet E, Locatis CN, De Jesus-Monge WE, Maisiak R, Lie WL. Effects of summer internship and follow-up distance mentoring programs on middle and high school student perceptions and interest in health careers. 
BMC Med Educ. 2018 May 2;18(1):84. doi: 10.1186/s12909-018-1205-3.
Santosh KC, Antani SK. Automated chest x-ray screening: Can lung region symmetry help detect pulmonary abnormalities?. 
doi: 10.1109/TMI.2017.2775636 vol. 37, no. 5, 1168-1177.
Vreeman DJ, Abhyankar S, McDonald CJ. Re: Unit conversions between LOINC codes Published June 19, 2017 [Letter]. 
J Am Med Inform Assoc. 2018 May 1;25(5):614-615. doi: 10.1093/jamia/ocx087.
Misra D, Gill MJ. FaceMatch: A System for Dynamic Search and Retrieval of Faces. 
Proc. Archiving 2018. Washington DC. pp. 53-57. DOI: 10.2352/issn.2168-3204.2018.1.0.12.
Edinger T, Demner-Fushman D, Cohen AM, Bedrick S, Hersh W. Evaluation of Clinical Text Segmentation to Facilitate Cohort Retrieval. 
AMIA Annu Symp Proc. 2018 Apr 16;2017:660-669. eCollection 2017.
Fung K, Xue Z, Ameye F, Gutierrez AR, D'Have A. Achieving Logical Equivalence between SNOMED CT and ICD-10-PCS Surgical Procedures. 
AMIA Annu Symp Proc. 2018 Apr 16;2017:724-733. eCollection 2017.
Kayaalp M. Modes of De-identification. 
AMIA Annu Symp Proc. 2018 Apr 16;2017:1044-1050. eCollection 2017.
Rajaraman S, Antani SK, Poostchi Mohammadabadi M, Silamut K, Hossain MA, Maude RJ, Jaeger S, Thoma GR. Pre-trained convolutional neural networks as feature extractors toward improved malaria parasite detection in thin blood smear images. 
PeerJ. 2018 Apr 16;6:e4568. doi: 10.7717/peerj.4568. eCollection 2018.
Rodriguez L, Morrison SM, Greenberg K, Demner-Fushman D. Mining the literature for genes associated with placenta-mediated maternal diseases. 
AMIA Annu Symp Proc. 2018 Apr 16;2017:1498-1506. eCollection 2017.
Bodenreider O. Evaluating the Quality and Interoperability of Biomedical Terminologies. 
Technical Report to the LHNCBC Board of Scientific Counselors April 2018
Rodriguez L, Demner-Fushman D. Extracting Diseases Co-occurring with Past Medical History of Lyme Disease. 
AMIA 2018 Informatics Summit
Huser V, Shmueli-Blumberg D. Data sharing platforms for de-identified data from human clinical trials. 
Clin Trials. 2018 Aug;15(4):413-423. doi: 10.1177/1740774518769655.
Gimbel RW, Pirrallo RG, Lowe SC, Wright DW, Zhang L, Woo MJ, Fontelo P, Liu F, Connor Z. Effect of clinical decision rules, patient cost and malpractice information on clinician brain CT image ordering: a randomized controlled trial. 
BMC Med Inform Decis Mak. 2018 Mar 12;18(1):20. doi: 10.1186/s12911-018-0602-1.
Xue Z, Antani SK, Long LR, Thoma GR. Using deep learning for detecting gender in adult chest radiographs. 
Proc SPIE 10579, Medical Imaging 2018: Imaging Informatics for Healthcare, Research, and Applications, 105790D (6 March 2018) pp. doi: 10.1117/12.2293027.
Moallem G, Sari-Sarraf H, Poostchi M, Maude RJ, Silamut K, Hossain MA, Antani SK, Jaeger S, Thoma G. Detecting and segmenting overlapping red blood cells in microscopic images of thin blood smears. 
Proc. SPIE 10581, Medical Imaging 2018:Digital Pathology, 105811F (6 March 2018); doi: 10.1117/12.2293762.
Xue Z, Jaeger S, Antani SK, Long LR, Karargyris A, Siegelman J, Folio L, Thoma GR. Localizing tuberculosis in chest radiographs with deep learning. . 
Proc SPIE 10579, Medical Imaging 2018: Imaging Informatics for Healthcare, Research, and Applications, 105790U (6 March 2018) pp. doi: 10.1117/12.2293022
Zohora FT, Antani SK, Santosh KC. Circle-like foreign element detection in chest x-rays using normalized cross-correlation and unsupervised clustering. 
Proc. SPIE 10574, Medical Imaging 2018: Image Processing, 105741V (2 March 2018); doi: 10.1117/12.2293739; doi.org/10.1117/12.2293739.
Almubarak H, Guo P, Stanley RJ, Long LR, Antani SK, Thoma GR. Algorithm Enhancements for Improvement of Localized Classification of Uterine Cervical Cancer Digital Histology Images. 
in Handbook of Research on Emerging Perspectives on Healthcare Information Systems and Informatics,. IGI Global (Hershey, PA).
Tang P, McDonald CJ. Computer-Based Patient-Record Systems - Chapter 9. 
In Shortliffe E, Perreault L, eds. Medical Informatics. New York: springer. 2001:327-358. DOI: 10.1007/978-0-387-21721-5_9.
Rajaraman S, Antani SK, Candemir S, Xue Z, Abuya J, Kohli M, Alderson P, Thoma GR. Comparing deep learning models for population screening using chest radiography. 
Proc. SPIE 10575, Medical Imaging 2018: Computer-Aided Diagnosis, 105751E (27 February 2018).
Thamizhvani TR, Lakshmanan S, Rajaraman S. Computer Aided Diagnosis of Skin Tumours from Dermal Images. . 
Hemanth D., Smys S. (eds) Computational Vision and Bio Inspired Computing. Lecture Notes in Computational Vision and Biomechanics, vol 28. Springer, Cham
Zhang Y, Baik SH, Zuvekas SH. Simulating Variation in Families' Spending across Marketplace Plans. 
Health Serv Res. 2018 Feb 14. doi: 10.1111/1475-6773.12831. [Epub ahead of print]
Xue Z, Antani SK, Long LR, Thoma GR. Using deep learning for detecting gender in adult chest radiographs. 
SPIE Medical Imaging 2018
Xue Z, Jaeger S, Antani SK, Long LR, Karargyris A, Siegelman J, Folio LR, Thoma GR. Localizing tuberculosis in chest radiographs with deep learning. 
SPIE Medical Imaging 2018
Kilicoglu H, Ben Abacha A, Mrabet Y, Shooshan SE, Rodriguez L, Masterton K, Demner-Fushman D. Semantic annotation of consumer health questions. 
BMC Bioinformatics. 2018 Feb 6;19(1):34. doi: 10.1186/s12859-018-2045-1.
Cui L, Bodenreider O, Shi J, Zhang GQ. Auditing SNOMED CT hierarchical relations based on lexical features of concepts in non-lattice subgraphs. 
Biomed Inform. 2018 Feb;78:177-184. doi: 10.1016/j.jbi.2017.12.010. Epub 2017 Dec 20.
McDonald CJ. FHIR Overview. 
Presentation by Clement J. McDonald, MD
Lynch P, Wang Y, Kanduru A, Luan X, Mericle L, Lu S, McDonald CJ. On‐the‐Fly Data Capture Tooling for FHIR/HL7 V2. 
HL7 January 2018 Working Group Meeting, New Orleans, LA February 1st, 2018.
Zweigenbaum P, Demner-Fushman D. Advanced Literature-Mining Tools. . 
In Edwards D, Stajich J, and Hansen D. (Editors). Bioinformatics: Tools and Applications. Springer 2009.
Janakiram C, Chalmers NI, Fontelo P, Huser V, Lopez Mitnik GL, Iafolla TJ, Brow AR, Dye BA. Gender and Race/ethnic Disparities in Opioid Prescriptions for Dental Diagnoses among Patients with Medicaid. 
J Am Dent Assoc, 2018. 149(4): p. 246-255.
Dangi S, Linte C, Yaniv Z. Cine cardiac MRI slice misalignment correction towards full 3D left ventricle segmentation. 
SPIE Medical Imaging: Image-Guided Procedures, Robotic Interventions, and Modeling, Houston, Texas, in press.
Demner-Fushman D. A dataset of 200 structured product labels annotated for adverse drug reactions. . 
Sci Data. 2018 Jan 30;5:180001. doi: 10.1038/sdata.2018.1.
Poostchi M, Silamut K, Maude RJ, Jaeger S, Thoma GR. Image analysis and machine learning for detecting malaria. . 
Transl Res. 2018 Apr;194:36-55. doi: 10.1016/j.trsl.2017.12.004. Epub 2018 Jan 12.
Kayaalp M. Patient Privacy in the Era of Big Data. 
Balkan Med J. 2018 Jan 20;35(1):8-17. doi: 10.4274/balkanmedj.2017.0966. Epub 2017 Sep 13.
Huser V, Kahn MG, Brown JS, Gouripeddi R. Methods for examining data quality in healthcare integrated data repositories. 
Pac Symp Biocomput. 2018;23:628-633.
Bryant B, Sari-Sarraf H, Long LR, Antani SK. A Kernel Support Vector Machine Trained Using Approximate Global and Exhaustive Local Sampling. 
Proceedings of the 4th IEEE/ACM International Conference on Big Data Computing, Applications and Technologies (BDCAT) 2017, Austin, Texas, USA, December 2017. Pp. 267-8 DOI: https://doi.org/10.1145/3148055.3149206
de Herrera G, Long LR, Antani SK. Graph Representation for Content–based fMRI Activation Map Retrieval. 
Proceedings of 1st Life Sciences Conference, Sydney, Australia, December 2017 pp. 129-32 DOI: https://doi.org/10.1109/LSC.2017.8268160.
Rajaraman S, Antani SK, Xue Z, Candemir S, Jaeger S, Thoma GR. Visualizing abnormalities in chest radiographs through salient network activations in Deep Learning. 
Proc. IEEE Life Sciences Conference (LSC), Sydney, Australia, 2017. pp. 71-74, DOI:10.1109/LSC.2017.8268146.
Harpaz R, DuMouchel W, Schuemie M, Bodenreider O, Friedman C, Horvitz E, Ripple A, Sorbello A, White RW, Winnenburg R, Shah NH. Toward multimodal signal detection of adverse drug reactions. . 
J Biomed Inform. 2017 Dec;76:41-49. doi: 10.1016/j.jbi.2017.10.013. Epub 2017 Nov 1.
Ben Abacha A, Long LR, Seco de Herrera AG, Antani SK, Wang K, Demner-Fushman D. Named Entity Recognition in Functional Neuroimaging Literature. 
BIBM 2017
Zou J, Antani SK, Thoma GR. Localizing and Recognizing Labels for Multi-Panel Figures in Biomedical Journals. 
Proceedings of International Conference on Document Analysis and Recognition, November 13, 2017
Moallem G, Poostchi M, Yu H, Palaniappan N, Silamut K, Maude RJ, Hossain Md Amir, Jaeger S, Antani SK, Thoma GR. Detecting and Segmenting White Blood Cells in Microscopy Images of Thin Blood Smears [Poster]. 
Annual Meeting of the American Society of Tropical Medicine & Hygiene (ASTMH), Poster, 2017
Lu C, Tormey D, McCreedy L, Browne AC. Enhancing LexSynonym Features in the Lexical Tools . 
AMIA 2017 Annual Symposium, Washington, DC, November 04-08, 2017, p. 2090
Raje S, Bhupatiraju R, Abdelrahman H, Busby B. MeSHgram: An Open Source Tool to Visually Browse Co-occurrence of MeSH Terms in PubMed [Poster]. 
AMIA 2017 Symposium Proceedings.
Abhyankar S, Schluter P, Bennett K, Vreeman D, McDonald CJ. Enabling Interoperability between Healthcare Devices and EHR Systems. 
In 2017 AMIA Symposium. Wasington DC: IEEE.
McDonald CJ, Vreeman D, Wang K, Carr C, Colins B, Abhyankar S, Deckard J, Rubin D, Langlotz C. The LOINC/RSNA Radiology Playbook: A unified terminology for radiology procedures. . 
In 2017 AMIA Symposium. Washington DC.
Almubarak HA, Stanley RJ, Long LR, Antani SK, Thoma GR, Zuna R, Frazier SR. Convolutional Neural Network Based Localized Classification of Uterine Cervical Cancer Digital Histology Images. 
Procedia Computer Science, Volume 114, 2017, Pages 281-287, ISSN 1877-0509, https://doi.org/10.1016/j.procs.2017.09.044.
Fallavollita P, Kersten M, Linte CA, Pratt P, Yaniv Z. Guest Editors' Foreword: Special Issue on Augmented Environments for Computer-Assisted Interventions CAI systems enable more precise, safer, and less invasive interventional treatments [Letter]. 
Healthc Technol Lett. 2017 Oct 27;4(5):149. doi: 10.1049/htl.2017.0078. eCollection 2017 Oct.
Baik SH, Kury F, McDonald CJ. Risk of Alzheimer's Disease Among Senior Medicare Beneficiaries Treated With Androgen Deprivation Therapy for Prostate Cancer. 
J Clin Oncol. 2017 Oct 20;35(30):3401-3409. doi: 10.1200/JCO.2017.72.6109. Epub 2017 Aug 25.
Ekong DU, Fontelo P. Prototype telepathology solutions that use the Raspberry Pi and mobile devices. 
2017 IEEE Global Humanitarian Technology Conference (GHTC), San Jose CA, 2017: 1-4.
Chatain GP, Patronas N, Smirniotopoulos J, James G, Piazza M, Benzo S, Ray-Chaudrury A, Sharma S, Lodish M, Nieman L, Stratakis CA, Chittiboina P. Potential utility of FLAIR in MRI-negative Cushing's disease. 
J Neurosurg. 2017 Oct 13:1-9. doi: 10.3171/2017.4.JNS17234.
Ghosh A, Brown GT, Fontelo P. Telepathology at the Armed Forces Institute of Pathology: A Retrospective Review of Consultations From 1996 to 1997. . 
Arch Pathol Lab Med. 2018 Feb;142(2):248-252. doi: 10.5858/arpa.2017-0055-OA. Epub 2017 Oct 2.
Fung K, Gutierrez A, Ameye F, D’Have A, Ariel B. Demonstrating the Benefits of Mapping SNOMED CT to ICD-10-PCS through a Prototype Application for End User Implementation. 
SNOMED Expo Oct 2017, Bratislava, Slovakia pp. 0
Guan Y, Li M, Jaeger S, Lure F, Raptopoulos V, Lu P, Folio LR, Candemir S, Antani SK, Siegelman J, Li J, Wu T, Thoma GR, Qu S. Applying Artificial Intelligence and Radiomics for Computer Aided Diagnosis and Risk Assessment in Chest Radiographs. 
2nd Conference on Machine Intelligence in Medical Imaging (CMIMI) of the Society for Imaging Informatics in Medicine (SIIM), Poster, 2017.
Moallem G, Jaeger S, Poostchi M, Palaniappan N, Yu H, Silamut K, Maude RJ, Antani SK, Thoma GR. White Blood Cell Detection and Segmentation in Microscopy Images of Thin Blood Smears [Poster]. 
NIH Research Festival, Poster, 2017
Fung K. Medical Terminologies in Action. 
Technical Report to the LHNCBC Board of Scientific Counselors September 2017
Ben Abacha A, De Herrera A, Gayen S, Demner-Fushman D, Antani SK. NLM at ImageCLEF 2017 Caption Task. . 
International Conference of the Cross-Language Evaluation Forum for European Languages 2017 Sep 11 (pp. 358-360). Springer, Cham.
Roberts K, Gururaj A, Chen X, Pournejati S, Cohen T, Hersh WR, Demner-Fushman D. Information Retrieval for Biomedical Datasets. 
2016 bioCADDIE Challenge. AMIA 2017.
Sun H, Li J, Wu Y, Wang L, Fung K. Using an Ontology-Based Approach to Handle Author Affiliations in a Large Biomedical Citation Database. 
Stud Health Technol Inform. 2017;245:1338.
Coakley M, Hurt D, Weder N, Mtingwa M, Fincher EC, Alekseyev V, Chen D, Yun A, Gizaw M, Swan J, Yoo TS, Huyen Y. The NIH 3D Print Exchange: A Public Resource for Bioscientific and Biomedical 3D Prints. 
3D Print Additive Manufacturing, Sep. 1, 2014, 1(3):137-140.
Abhyankar S, Vreeman DJ, Westra BL, Delaney CW. Comments on the Use of LOINC and SNOMED CT for Representing Nursing Data [Letter]. 
Int J Nurs Knowl. 2017 Aug 30. doi: 10.1111/2047-3095.12183. [Epub ahead of print]
Bhupatiraju R, Fung K, Bodenreider O. MetaMapLite in Excel: Biomedical named-entity recognition for non-technical users. 
Stud Health Technol Inform (Proc Medinfo): 1252.
Rajaraman S, Antani SK, Jaeger S. Visualizing Deep Learning Activations for Improved Malaria Cell Classification. 
Proceedings of The First Workshop in Medical Informatics and Healthcare (MIH 2017), Proceedings of Machine Learning Research (PMLR), v. 69, p. 40-47.
Marchell R, Locatis CN, Brgess G, Maisiak R, Liu WL, Ackerman M. Patient and Provider Satisfaction with Teledermatology. 
Telemed J E Health. 2017 Aug;23(8):684-690. doi: 10.1089/tmj.2016.0192. Epub 2017 Apr 4.
Mundkur ML, Callaghan FM, Abhyankar S, McDonald CJ. Use of Electronic Health Record Data to Evaluate the Impact of Race on 30-Day Mortality in Patients Admitted to the Intensive Care Unit. 
J Racial Ethn Health Disparities. 2017 Aug;4(4):539-548. doi: 10.1007/s40615-016-0256-6. Epub 2016 Jun 20.
Blake C, Rindflesch TC. Leveraging syntax to better capture the semantics of elliptical coordinated compound noun phrases. 
J Biomed Inform. 2017 Aug;72:120-131. doi: 10.1016/j.jbi.2017.07.001. Epub 2017 Jul 4.
Mrabet Y, Kilicoglu H, Demner-Fushman D. TextFlow: A Text Similarity Measure based on Continuous Sequences. 
Proceedings of the 55th Annual Meeting of the Association for Computational Linguistics, 2017, Vancouver, Canada, July 30 - August 4, Volume
Kim I, Thoma GR. Machine Learning with Selective Word Statistics for Automated Classification of Citation Subjectivity in Online Biomedical Articles. 
Proc. Int’l Conf. Artificial Intelligence (ICAI’17), pp. 201-207, Las Vegas, July 2017.
Kim J, Hong S, Thoma GR. Labeling Author Affiliations in Biomedical Articles Using Markov Model Classifiers. 
The 13th International Conference on Data Mining (DMIN2017), pp. 105-110, Las Vegas, USA, July 2017.
Kilicoglu H, Rosemblat G, Rindflesch TC. Assigning factuality values to semantic relations extracted from biomedical research literature. 
PLoS One. 2017 Jul 5;12(7):e0179926. doi: 10.1371/journal.pone.0179926. eCollection 2017.
Jaeger S. Malaria Datasets. 
Bongiorno MA, Nathan N, Oyerinde O, Wang JA, Lee CR, Brown G, Moss J, Darling TN. Clinical Characteristics of Connective Tissue Nevi in Tuberous Sclerosis Complex With Special Emphasis on Shagreen Patches. 
JAMA Dermatol. 2017 Jul 1;153(7):660-665. doi: 10.1001/jamadermatol.2017.0298.
Fung K, Kapusnik-Uner J, Cunningham J, Higby-Baker S, Bodenreider O. Comparison of three commercial knowledge bases for detection of drug-drug interactions in clinical decision support. 
J Am Med Inform Assoc. 2017 Jul 1;24(4):806-812. doi: 10.1093/jamia/ocx010.
Cui L, Zhu W, Tao S, Case JT, Bodenreider O, Zhang GQ. Mining non-lattice subgraphs for detecting missing hierarchical relations and concepts in SNOMED CT. 
J Am Med Inform Assoc. 2017 Jul 1;24(4):788-798. doi: 10.1093/jamia/ocw175.
Rindflesch TC, Blake CL, Fiszman M, Kilicoglu H, Rosemblat G, Schneider J, Zeiss CJ. Informatics Support for Basic Research in Biomedicine. 
ILAR J. 2017 Jul 1;58(1):80-89. doi: 10.1093/ilar/ilx004.
Zhang, K, Demner-Fushman D. Automated classification of eligibility criteria in clinical trials to facilitate patient-trial matching for specific patient populations. . 
J Am Med Inform Assoc. 2017 Jul 1;24(4):781-787. doi: 10.1093/jamia/ocw176.
Candemir S, Antani SK, Xue Z, Thoma GR. Novel Method for Storyboarding Biomedical Videos for Medical Informatics. 
30th IEEE International Symposium on Computer-Based Medical Systems
Vreeman DJ, Abhyankar S, McDonald CJ. Unit conversions between LOINC codes Published June 19, 2017 [Letter]. 
Journal of the American Medical Informatics Association, 1–3. http://doi.org/10.1093/jamia/ocx087.
Kilicoglu H. Biomedical text mining for research rigor and integrity: tasks, challenges, directions. 
Brief Bioinform. 2017 Jun 13. doi: 10.1093/bib/bbx057.
Guo P, Stanley RJ, Cole JG, Hagerty JR, Stoecker WV. Color Feature-based Pillbox Image Color Recognition. 
Published 2017 in VISIGRAPP DOI:10.5220/0006136001880194.
Bush R, Heierman E, Knafel A, Lardin L, McDonald CJ. LIVD – Digital Format for Publication of LOINC to Vendor IVD Test Results. 
IVD Industry Connectivity Consortium. http://ivdconnectivity.org/livd/. Published June 1, 2017. Accessed August 9, 2017.
Chakrabarti S, Sen A, Huser V, Hruby GW, Rusanova A, Albers DJ, Weng C. An Interoperable Similarity-based Cohort Identification Method Using the OMOP Common Data Model version 5.0. 
J Healthc Inform Res. 2017 Jun;1(1):1-18. doi: 10.1007/s41666-017-0005-6. Epub 2017 Jun 8.
Ben Abacha A, Agichtein E, Pinter Y, Demner-Fushman D. Overview of the Medical QA Task @ TREC 2017 LiveQA Track. 
TREC, Gaithersburg, MD, 2017.
McDonald CJ, Maglott D, Abhyankar S, Goodwin R, Kanduru A, Lu S, Lynch P, Vreeman D, Wang Y, Wood G. HL7 Version 2.5.1 Implementation Guide: Lab Results Interface (LRI), Release 1, STU Release 4. 
US Realm, Chapter 5, Clinical Genomics Results Reporting. Published for May 2017 Ballot.
Ames NJ, Powers JH, Ranucci A, Gartrell K, Yang L, VanRaden M, Leidy NK, Wallen GR. A systematic approach for studying the signs and symptoms of fever in adult patients: the fever assessment tool (FAST). 
Health Qual Life Outcomes. 2017 Apr 27;15(1):84. doi: 10.1186/s12955-017-0644-6.
Ash J, Sittig D. Everything Electronic Medical Records: Systems, Standards and Studies. 
Conversations with Medical Informatics Pioneers: An oral history project.
Gardner C, Liu F, Fontelo P, Flanagan MC, Hoang A, Burke HB. Assessing the usability by clinicians of VISION: A hierarchical display of patient-collected physiological information to clinicians. 
BMC Med Inform Decis Mak. 2017 Apr 14;17(1):41. doi: 10.1186/s12911-017-0435-3.
Ekong D, Liu F, Brown G, Ghosh A, Fontelo P. Evaluation of Android Smartphones for Telepathology. 
J Pathol Inform. 2017 Apr 10;8:16. doi: 10.4103/jpi.jpi_93_16. eCollection 2017.
Huser V. Clinical Data Science. 
Technical Report to the LHNCBC Board of Scientific Counselors April 2017
Mayer JE, Fontelo P. Meta-analysis on the effect of text message reminders for HIV-related compliance. 
AIDS Care. 2017 Apr;29(4):409-417. doi: 10.1080/09540121.2016.1214674. Epub 2016 Aug 1.
Borovikov E, Vajda S, Gill MJ. Face Match for Family Reunification: Real-World Face Image Retrieval. 
International Journal of Computer Vision and Image Processing. DOI: 10.4018/IJCVIP.2017040102.
Roberts K, Boland MR, Pruinelli L, Dcruz J, Berry A, Georgsson M, Hazen R, Sarmiento RF, Backonja U, Yu K-H, Jiang Y, Brennan PF. Biomedical informatics advancing the national health agenda: the AMIA 2015 year-in-review in clinical and consumer informatics. 
J Am Med Inform Assoc. 2017 Apr 1;24(e1):e185-e190. doi: 10.1093/jamia/ocw103.
Raje S, Bodenreider O. Investigating the coverage of diseases across biomedical research and clinical ontologies. 
Proceedings of the AMIA Joint Summits on Translational Science CRI: 384-385.
Sorbello A, Ripple AM, Tonning J, Munoz M, Hasan R, Ly T, Francis H, Bodenreider O. Harnessing scientific literature reports for pharmacovigilance. Prototype software analytical tool development and usability testing. 
Appl Clin Inform. 2017 Mar 22;8(1):291-305. doi: 10.4338/ACI-2016-11-RA-0188.
Collins H, Calvo SC, Greenberg K, Forman NL, Morrison SM. Using Genetics Home Reference to Reinforce Patient Education [Poster]. . 
American College of Medical Genetics Annual Meeting, Phoenix, AZ, March 21-25, 2017.
Xue Z, Antani SK, Long LR, Thoma GR. Automatic multi-label annotation of abdominal CT images using CBIR. 
Proc. SPIE 10138, Medical Imaging 2017: Imaging Informatics for Healthcare, Research, and Applications, 1013807 (March 13, 2017); doi:10.1117/12.2254368.
Ding M, Antani SK, Jaeger S, Xue Z, Candemir S, Kohli M, Thoma GR. Local-Global Classifier Fusion for Screening Chest Radiographs. 
Proc. SPIE 10138, Medical Imaging 2017: Imaging Informatics for Healthcare, Research, and Applications, 101380A (March 13, 2017); doi:10.1117/12.2252459
Marchell R, Locatis C, Burges G, Maisiak R, Liu WL, Ackerman M. Comparing High Definition Live Interactive and Store-and-Forward Consultations to In-Person Examinations. 
Telemed J E Health. 2017 Mar;23(3):213-218. doi: 10.1089/tmj.2016.0093. Epub 2016 Oct 5.
Mork JG, Aronson A, Demner-Fushman D. 12 years on - Is the NLM medical text indexer still useful and relevant?. 
J Biomed Semantics. 2017 Feb 23;8(1):8. doi: 10.1186/s13326-017-0113-5.
Lu C, Tormey D, McCreedy L, Browne AC. Generating A Distilled N-Gram Set: Effective Lexical Multiword Building in the SPECIALIST Lexicon. 
The 10th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2017), Vol(5): HEALTHINF, PORTO, Portugal, February 21-23, 2017, p. 77-87.
Lure F, Jaeger S, Antani SK. Automated Systems for microscopic and radiographic tuberculosis screening. 
Electronic Journal of Emerging Infectious Diseases, Vol. 2, No. 1, pp. 5-9, February 2017. [In Chinese]
Workman E, Weir, C, Rindflesch TC. Differentiating Sense through Semantic Interaction Data. 
AMIA Annu Symp Proc. 2017 Feb 10;2016:1238-1247. eCollection 2016.
Ben Abacha A, Demner-Fushman D. Recognizing Question Entailment for Medical Question Answering. 
AMIA Annu Symp Proc. 2017 Feb 10;2016:310-318. eCollection 2016.
Fung K, Xu J, Amey F, Gutierrez AR, D'Have A. Leveraging Lexical Matching and Ontological Alignment to Map SNOMED CT Surgical Procedures to ICD-10-PCS. 
AMIA Annu Symp Proc. 2017 Feb 10;2016:570-579. eCollection 2016.
Kury F, Baik SH, McDonald CJ. Analysis of Healthcare Cost and Utilization in the First Two Years of the Medicare Shared Savings Program Using Big Data from the CMS Enclave. 
AMIA Annu Symp Proc. 2017 Feb 10;2016:724-733. eCollection 2016.
Mrabet Y, Kilicoglu H, Roberts K, Demner-Fushman D. Combining Open-domain and Biomedical Knowledge for Topic Recognition in Consumer Health Questions. 
AMIA Annu Symp Proc. 2017 Feb 10;2016:914-923. eCollection 2016.
Roberts K, Rodriguez L, Shooshan SE, Demner-Fushman D. Resource Classification for Medical Questions. . 
AMIA Annu Symp Proc. 2017 Feb 10;2016:1040-1049. eCollection 2016.
Cahan A, Cimino JJ. Improving precision medicine using individual patient data from trials. 
CMAJ. 2017 Feb 6;189(5):E204-E207. doi: 10.1503/cmaj.160267. Epub 2016 Aug 29.
Peters L, Nguyen T, Bodenreider O. Terminology Status APIs - Mapping Obsolete Codes to Current RxNorm, SNOMED CT, and LOINC Concepts. 
Stud Health Technol Inform. 2017;245:1333.
Demner-Fushman D, Rogers W, Aronson A. MetaMap Lite: an evaluation of a new Java implementation of MetaMap. 
J Am Med Inform Assoc. 2017 Jul 1;24(4):841-844. doi: 10.1093/jamia/ocw177.
KC S, Aafaque A, Antani SK, Thoma GR. Line Segment-Based Stitched Multipanel Figure Separation for Effective Biomedical CBIR. 
Int. J. Patt. Recogn. Artif. Intelligence 31, 1757003 (2017) https://doi.org/10.1142/S0218001417570038.
KC S, Antani SK. Automated chest X-ray screening: Can lung region symmetry help detect pulmonary abnormalities? . 
IEEE Transactions on Medical Imaging. doi: https://doi.org/10.1109/TMI.2017.2775636.
Lu C, Tormey D, McCreedy L, Browne AC. Enhanced LexSynonym Acquisition for Effective UMLS Concept Mapping. 
Stud Health Technol Inform. 2017;245:501-505.
Bahr NJ, Nelson SD, Winnenburg R, Bodenreider O. Eliciting the Intension of Drug Value Sets - Principles and Quality Assurance Applications. 
Stud Health Technol Inform. 2017;245:843-847.
Topaz M, Goss F, Blumenthal K, Lai K, Seger DL, Slight SP, Wickner PG, Robinson GA, Fung KW, McClure RC, Spiro S, Acker WW, Bates DW, Zhou L. Towards improved drug allergy alerts: Multidisciplinary expert recommendations. 
Int J Med Inform. 2017 Jan;97:353-355. doi: 10.1016/j.ijmedinf.2016.10.006. Epub 2016 Oct 6.
Dhombres F, Bodenreider O. Trends in Fetal Medicine: A 10-Year Bibliometric Analysis of Prenatal Diagnosis. 
Stud Health Technol Inform. 2017;245:853-857.
Deardorff A, Masterton K, Roberts K, Kilicoglu H, Demner-Fushman D. A protocol-driven approach to automatically finding authoritative answers to consumer health questions in online resources. 
JASIST, 68(7): 1724-1736. doi: 10.1002/asi.23806.
Nelsonn SD, Parker J, Lario R, Winnenburg R, Erlbaum MS, Lincoln MJ, Bodenreider O. Interoperability of medication classification systems: Lessons learned mapping estab-lished pharmacologic classes (EPCs) to SNOMED CT. 
Stud Health Technol Inform. 2017;245:920-924.
Yu Z, Nguyen T, Dhombres F, Johnson T, Bodenreider O. "Hybrid Topics" - Facilitating the Interpretation of Topics Through the Addition of MeSH Descriptors to Bags of Words. 
Stud Health Technol Inform. 2017;245:662-666.
Cohen T, Roberts K, Gururaj AE, Chen X, Pournejati S, Alter G, Hersh WR, Demner-Fushman D, Ohno-Machado L, Xu H. A publicly available benchmark for biomedical dataset retrieval: the reference standard for the 2016 bioCADDIE dataset retrieval challenge. 
Database (Oxford). 2017 Jan 1;2017. doi: 10.1093/database/bax061.
Guo P, Almubarak H, Banerjee K, Stanley RJ, Long LR, Antani SK, Thoma GR, Zuna R, Frazier S, Moss R, Stoecker W. Enhancements in localized classification for uterine cervical cancer digital histology image assessment. 
J Pathol Inform. 2016 Dec 30;7:51. doi: 10.4103/2153-3539.197193. eCollection 2016.
Borovikov E, Vajda S. FaceMatch: real-world face image retrieval. 
In: Santosh K., Hangarge M., Bevilacqua V., Negi A. (eds) Recent Trends in Image Processing and Pattern Recognition. RTIP2R 2016. Communications in Computer and Information Science, vol 709. Springer, Singapore. 405-419.
Chachra S, Ben Abacha A, Shooshan SE, Rodriguez L, Demner-Fushman D. A Hybrid Approach to Generation of Missing Abstracts in Biomedical Literature. 
Proceedings of COLING 2016, the 26th International Conference on Computational Linguistics: Technical Papers: 1093-1100.
Kilicoglu H. Inferring Implicit Causal Relationships in Biomedical Literature. 
Proc 15th Workshop on Biomedical Natural Language Processing. Pages 46-55. 2016.
Huser V, DeFalco FJ, Schuemie M, Ryan PB, Shang N, Velez M, Park RW, Boyce RD, Duke J, Khare R, Utidjian L, Bailey L. Multisite Evaluation of a Data Quality Tool for Patient-Level Clinical Data Sets. 
EGEMS (Wash DC). 2016 Nov 30;4(1):1239. doi: 10.13063/2327-9214.1239. eCollection 2016.
Greenberg K, Calvo SC, Collins H, Foreman NL, Morrison SM. Genetics Home Reference: A point of care resource in the genomic medicine era [Poster]. 
American Society of Human Genetics Annual Meeting, Vancouver, British Columbia, Canada, November 18-22, 2016.
De Herrera A, Long LR, Antani SK. Content-Based fMRI Brain Maps Retrieval. 
International Conference on Brain and Health Informatics, Omaha, NE, USA, October 13-16, 2016.
De Herrera A, Schaer R, Antani SK, Müller H. Using Crowdsourcing for Multi-label Biomedical Compound Figure Annotation. 
In: Carneiro G. et al. (eds) Deep Learning and Data Labeling for Medical Applications. LABELS 2016, DLMIA 2016. Lecture Notes in Computer Science, vol 10008. Springer, Cham
Ben Abacha A. NLM_NIH at TREC 2016 Clinical Decision Support Track. 
Proceedings of TREC 2016, the 25th Text Retrieval Conference, Gaithersburg, MD, USA, November 2016.
Wang Y, Lynch P, Kanduru A, Hook J, Mericle L, Ludet C, Vreeman D, McDonald CJ. LHC-Forms and Related Widgets for Capturing and Tuning Health Data [Poster]. 
AMIA Annual Symposium, Chicago IL
Ben Abacha A, Demner-Fushman D. NLM_NIH at SemEval-2017 Task 3: from Question Entailment to Question Similarity for Community Question Answering. 
In Proceedings of the 11th International Workshop on Semantic Evaluation (SemEval@ACL) 2017: 349-352.
Liang Z, Powell A, Ersoy I, Poostchi M, Silamut K, Palaniappan K, Guo P, Hossain M, Antani SK, Maude R, Huang J, Jaeger S, Thoma GR. CNN-Based Image Analysis for Malaria Diagnosis. 
IEEE International Conference on Bioinformatics & Biomedicine (BIBM), Shenzhen, China, 2016.
Borovikov E, Yershov S. On Virtual Characters that Can See. 
7th Annual International Conference on Biologically Inspired Cognitive Architectures, BICA 2016, held July 16 to July 19, 2016 in New York City, NY, USA
Ben Abacha A, de Herrera A, Wang Ke, Long LR, Antani SK, Demner-Fushman D. Named entity recognition in functional neuroimaging literature. 
2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Kansas City, MO, 2017, pp. 2218-2220.
Jaeger S, Silamut K, Yu H, Poostchi Mohammadabadi M, Ersoy I, Powell A, Liang Z, Hossain M, Antani SK, Palaniappan K, Maude R, Thoma GR. Reducing the Diagnostic Burden of Malaria Using Microscopy Image Analysis and Machine Learning in the Field [Poster]. 
Annual Meeting of the American Society of Tropical Medicine & Hygiene (ASTMH), Atlanta, USA, 2016.
Madani S, Henderson J, Fung K. Development of an oncology subset of SNOMED CT based on patient notes. 
AMIA Annu Symp Proc 2016: 91-92.
Rodriguez L, Morrison SM, Greenberg K, Demner-Fushman D. Towards Automatic Discovery of Genes Related to Human Placenta [Poster]. 
Poster Fall AMIA 2016.
Guo P, Stanley RJ, De S, Long LR, Antani SK, Thoma GR, Demner-Fushman D, Sornapudia S. Features Advances to Automatically Find Images for Application to Clinical Decision Support. 
Medical Research Archives. 4(7) 2016. DOI: 10.18103/mra.v4i7.761
Linte CA, Yaniv Z. Image-Guided Interventions: We've come a long way, but are we there?. 
IEEE Pulse. 2016 Nov-Dec;7(6):46-50.
Shih RY, Smirniotopoulos J. Posterior Fossa Tumors inAdult Patients. 
Neuroimaging Clin N Am. 2016 Nov;26(4):493-510. doi: 10.1016/j.nic.2016.06.003. Epub 2016 Sep 2.
Drake-Perez M, Smirniotopoulos J. Extraparenchymal Lesions in Adults. 
Neuroimaging Clin N Am. 2016 Nov;26(4):621-646. doi: 10.1016/j.nic.2016.06.009.
Kochmann M, Locatis CN. Telemedicine in the Apple App Store: An exploratory study of teledermatology apps. . 
In Smari, W. & Natarian, J. (Eds.), Proc 2016 Int Conf Collaboration Technologies and Systems, Orlando, Florida, October 31-November 4, Institute for Electrical and Electronic Engineers & Association for Computing Machinery, 534-537.
Marchell R, Locatis CN, Ackerman MA. High definition live interactive and store and forward teledermatology: A comparison of concordance, confidence, and satisfaction with in-person exams. 
In Smari, W. & Natarian, J. (Eds.), Proceedings of the 2016 International Conference on Collaboration Technologies and Systems, Orlando, Florida, October 31. Institute for Electrical and Electronic Engineers & Association for Computing Machinery, 520-523.
McDonald CJ, Wang Y, Lynch P, Kanduru A. Feeding FHIR with LHC-Forms. 
HL7 Partners in Interoperability Mt. Washington Conference Center, Baltimore, MD
Yaniv Z, Faruque J, Howe S, Dunn K, Sharlip D, Bond A, Perillan P, Bodenreider O, Ackerman M, Yoo TS. The national library of medicine pill image recognition challenge: An initial report. 
Z. Yaniv et al., "The national library of medicine pill image recognition challenge: An initial report," 2016 IEEE Applied Imagery Pattern Recognition Workshop (AIPR), Washington, DC, 2016, pp. 1-9. doi: 10.1109/AIPR.2016.8010584. http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=8010584&isnumber=8010542.
De Herrera A, Long LR, Antani SK. Content–based fMRI activation maps retrieval [Poster]. 
BIH 2016: Brain Informatics and Health pp 173-180, October 13-16, 2016.
Kastrin A, Rindflesch TC, Hristovski D. Link prediction on a network of co-occurring MeSH terms: Towards literature-based discovery. . 
Methods of Information in Medicine 55(4):340-6.
Xue Z, Rahman M, Antani SK, Long LR, Demner-Fushman D, Thoma GR. Modality Classification for Searching Figures in Biomedical Literature. 
Proceedings of the IEEE 29th International Symposium on Computer-Based Medical Systems, pp. 152-157, 2016. doi:10.1109/CBMS.2016.29.
De Herrera A, Schaer R, Bromuri S, Müller H. Overview of the ImageCLEF 2016 Medical Task. 
CLEF working notes 2016, CEUR, 2016.
Villegas M, Müller R, De Herrera A, Schaer R, Bromuri S, Gilbert A, Piras L, Wang J, Yan F, Ramisa A, Dellandrea E, Gaizauskas R, Mikolajczyk K, Puigcerver J, Toselli A, Sánchez J, Vidal E. General Overview of ImageCLEF at the CLEF 2016 Labs. 
CLEF Proceedings, Springer, 2016
Borovikov E, Vajda S, Lingappa G, Bonifant MC. Parallel Computing in Face Image Retrieval: Practical Approach to the Real-World Image Search. 
Multi-Core Computer Vision and Image Processing for Intelligent Applications. IGI Global, 2017. 155-189. Web. 12 Sep. 2016. doi:10.4018/978-1-5225-0889-2.ch006
Kim J, Thoma GR. Named Entity Recognition in Affiliations of Biomedical Articles Using Statistics and HMM Classifiers. 
The 2016 International Conference on Data Mining (DMIN2016), Las Vegas, USA, pp. 236-241, July, 2016.
Mrabet Y, Vougiouklis P, Kilicoglu H, Gardent C, Demner-Fushman D, Hare J, Simperl E. Aligning Texts and Knowledge Bases with Semantic Sentence Simplification. 
WebNLG 2016.
Oellrich A, Collier N, Groza T, Rebholz-Schuhmann D, Shah N, Bodenreider O, Borlan MR, Georgiev I, Liu H, Livingston K, Luna A, Mallon AM, Manda P, Robinson PM, Rustici G, Simonn M, Wang L, Winnenburg R, Dumontier M. The digital revolution in phenotyping. 
Brief Bioinform. 2016 Sep;17(5):819-30. doi: 10.1093/bib/bbv083. Epub 2015 Sep 29.
Xu T, Zhang H, Xin C, Kim E, Long LR, Xue Z, Antani SK, Huang Z. Multi-feature based Benchmark for Cervical Dysplasia Classification Evaluation. 
Pattern Recognition. ISSN 0031-3203, DOI: 10.1016/j.patcog.2016.09.027.
KC S, Vajda S, Antani S, Thoma GR. Edge map analysis in chest X-rays for automatic pulmonary abnormality screening. 
Int J Comput Assist Radiol Surg. 2016 Sep;11(9):1637-46. doi: 10.1007/s11548-016-1359-6. Epub 2016 Mar 19.
Jarlenski M, Baik SH, Zhang Y. Trends in Use of Medications for Smoking Cessation in Medicare, 2007-2012. 
Am J Prev Med. 2016 Sep;51(3):301-8. doi: 10.1016/j.amepre.2016.02.018. Epub 2016 Mar 30.
Borovikov E, Bonifant MC, Lingappa G, Gill MJ, Thoma GR. FaceMatch: a visual search system for family reunification during disasters [Poster]. 
NIH Research Festival, September 2016
Mrabet Y, Kilicoglu H, Demner-Fushman D. Unsupervised Ranking of Knowledge Bases for Named Entity Recognition. 
ECAI 2016, The Hague, The Netherlands, 1248-1255.
Demner-Fushman D, Antani SK, Chachra S, Kushnir M, Gayen S. Open-i Imaging informatics, natural language processing and multi-modal information retrieval - research and development. 
Technical Report to the LHNCBC Board of Scientific Counselors September 2016
Hristovski D, Kastrin A, Dinevski D, Burgun A, Ziberna L, Rindflesch TC. Using Literature-Based Discovery to Explain Adverse Drug Effects. 
J Med Syst. 2016 Aug;40(8):185. doi: 10.1007/s10916-016-0544-z. Epub 2016 Jun 18.
Boyce RD, Voss EA, Huser V, Evans L, Reich C, Duke JD, Tatonetti NP, Lorberbaum T, Dumontier M, Hauben M, Wallberg M. LAERTES: An open scalable architecture for linking pharmacovigilance evidence sources with clinical data. 
Proc International Conference on Biomedical Ontology and BioCreative (ICBO BioCreative 2016). http://icbo2016.cgrb.oregonstate.edu/node/354.
Kochmann M, Locatis C. Direct to Consumer Mobile Teledermatology Apps: An Exploratory Study. 
Telemed J E Health. 2016 Aug;22(8):689-93. doi: 10.1089/tmj.2015.0189. Epub 2016 Mar 9.
Driessen J, Baik SH, Zhang Y. Trends in Off-Label Use of Second-Generation Antipsychotics in the Medicare Population From 2006 to 2012. 
Psychiatr Serv. 2016 Aug 1;67(8):898-903. doi: 10.1176/appi.ps.201500316. Epub 2016 Apr 15.
Wei W, Marmor R, Singh S, Wang S, Demner-Fushman D, Kuo TT, Hsu CN, Ohno-Machado L. Finding Related Publications: Extending the Set of Terms Used to Assess Article Similarity. 
AMIA Jt Summits Transl Sci Proc. 2016 Jul 20;2016:225-34. eCollection 2016.
Homer ML, Palmer NP, Bodenreider O, Cami A, Chadwick L, Mandl KD. The Drug Data to Knowledge Pipeline: Large-Scale Claims Data Classification for Pharmacologic Insight. 
AMIA Jt Summits Transl Sci Proc. 2016 Jul 20;2016:105-11. eCollection 2016.
Shin HC, Roberts K, Lu L, Demner-Fushman D. Learning to Read Chest X-Rays: Recurrent Neural Cascade Model for Automated Image Annotation. 
IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2016.
Roberts K, Demner-Fushman D. Annotating Logical Forms for EHR Questions. 
Proceedings of the Language Resources and Evaluation Conference, LREC,23-28 May 2016, Portorož.
Kim J, Lobuglio PS, Thoma GR. Visualization of Statistics from MEDLINE. 
2016 IEEE 29th International Symposium on Computer-Based Medical Systems (CBMS 2016), Dublin and Belfast, Ireland, pp. 290-291, June, 2016.
Ben Abacha A, Demner-Fushman D. Meta-Learning with Selective Data Augmentation for Medical Entity Recognition. 
International Journal of Computational Linguistics and Applications (IJCLA) 7(2): 167-182 (2016)
Hripcsak G, Ryan PB, Duke JD, Shah NH, Park RW, Huser V, Suchard MA, Schuemie MJ, DeFalco FJ, Perotte A, Banda JM, Reich CG, Schilling LM, Matheny ME, Meeker D, Pratt N, Madigan D. Characterizing treatment pathways at scale using the OHDSI network. 
Proc Natl Acad Sci U S A. 2016 Jul 5;113(27):7329-36. doi: 10.1073/pnas.1510502113. Epub 2016 Jun 6.
Kwon J, Wang A, Burke DJ, Boudreau HE, Lekstrom KJ, Korzeniowska A, Sugamata R, Kim YS, Yi L, Ersoy I, Jaeger S, Palaniappan K, Ambruso DR, Jackson SH, Leto TL. Peroxiredoxin 6 (Prdx6) supports NADPH oxidase1 (Nox1)-based superoxide generation and cell migration. 
Free Radic Biol Med. 2016 Jul;96:99-115. doi: 10.1016/j.freeradbiomed.2016.04.009. Epub 2016 Apr 14.
Roberts K, Demner-Fushman D. Interactive use of online health resources: a comparison of consumer and professional questions. 
J Am Med Inform Assoc. 2016 Jul;23(4):802-11. doi: 10.1093/jamia/ocw024. Epub 2016 May 4.
Candemir S, Jaeger S, Antani S, Bagci U, Folio LR, Xu Z, Thoma G. Atlas-based rib-bone detection in chest X-rays. 
Comput Med Imaging Graph. 2016 Jul;51:32-9. doi: 10.1016/j.compmedimag.2016.04.002. Epub 2016 Apr 13.
Huser V, Cimino JJ. Impending Challenges for the Use of Big Data. 
Int J Radiat Oncol Biol Phys. 2016 Jul 1;95(3):890-894. doi: 10.1016/j.ijrobp.2015.10.060. Epub 2015 Nov 5.
Benedict SH, Hoffman K, Martel MK, Abernethy AP, Asher AL, Capala J, Chen RC, Chera B, Couch J, Deye J, Efstathiou JA, Ford E, Fraass BA, Gabriel PE, Huser V, Kavanagh BD, Khuntia D, Marks LB, Mayo C, McNutt T, Miller RS, Moore KL, Prior F, Roelofs E, Rosenstein BS, Sloan J, Theriault A, Vikram B. Overview of the American Society for Radiation Oncology-National Institutes of Health-American Association of Physicists in Medicine Workshop 2015: Exploring Opportunities for Radiation Oncology in the Era of Big Data. 
Int J Radiat Oncol Biol Phys. 2016 Jul 1;95(3):873-879. doi: 10.1016/j.ijrobp.2016.03.006.
James E. McDonald, MD, Ron Fishman, MD (Editor), McDonald CJ (Editor). FOCUS Eye Care in Haiti and Nigeria from 1961-1996. 
E-book (1st edition 2010, 2nd edition 2014).
KC S, Alam M, Roy P, Wendling L, Antani SK, Thoma GR. A simple and efficient arrowhead detection in biomedical images. 
International J Pattern Recognition and Artificial Intelligence (IJPRAI), 30(5), 1657002, 2016, DOI: 10.1142/S0218001416570020.
Kilicoglu H, Ben Abacha A, Mrabet Y, Roberts K, Rodriguez L, Shooshan SE, Demner-Fushman D. Annotating named entities in consumer health questions. 
LREC,23-28 May 2016, Portorož.
Demner-Fushman D, Kilicoglu H. Dataset: CHQA Named Entity Dataset. 
Kilicoglu H. Software: Bio-SCoRes. 
Lu C, Tormey D, McDreedy L, Browne AC. Multiword frequency analysis based on MEDLINE N - gram set [Poster]. 
AMIA 2016 Annual Symposium, Chicago, IL, November 12-16, 2016.
KC S, Wendling L, Antani SK, Thoma GR. Overlaid arrow detection for labeling biomedical image regions. 
IEEE Intelligent Systems, Special Issue on Pattern Recognition, 31(3):66-75, May-June 2016.DOI: 10.1109/MIS.2016.24.
Xue Z, Antani SK, Long LR, Demner-Fushman D, Thoma GR. Improving face image extraction by using deep learning technique. 
Proc. SPIE 9789, Medical Imaging 2016: PACS and Imaging Informatics: Next Generation and Innovations, 97890J (March 25, 2016); doi:10.1117/12.2216278.
Collins H, Calvo SC, Greenberg K, Forman, NL, Morrison SM. Information Needs in the Precision Medicine Era: How Genetics Home Reference Can Help. 
Interact J Med Res 2016;5(2):e13 DOI: 10.2196/ijmr.5199
Kilicoglu H, Rosemblat G, Fiszman M, Rindflesch TC. Sortal anaphora resolution to enhance relation extraction from biomedical literature. 
BMC Bioinformatics. 2016 Apr 14;17:163. doi: 10.1186/s12859-016-1009-6.
Moyer E, Hagenauer M, Lesko M, Francis F, Rodriguez O, Nagarajan V, Huser V, Busby B. MetaNetVar: Pipeline for applying network analysis tools for genomic variants analysis. 
F1000Res. 2016 Apr 13;5:674. doi: 10.12688/f1000research.8288.1. eCollection 2016.
Fung KW, Richesson R, Smerek M, Pereira KC, Green BB, Patkar A, Clowse M, Bauck A, Bodenreider O. Preparing for the ICD-10-CM Transition: Automated Methods for Translating ICD Codes in Clinical Phenotype Definitions. 
EGEMS (Wash DC). 2016 Apr 12;4(1):1211. doi: 10.13063/2327-9214.1211. eCollection 2016.
Demner-Fushman D, Mork JG. NLM Medical Text Indexer. 
Technical Report to the LHNCBC Board of Scientific Counselors April 2016
Workman TE, Fiszman M, Cairelli MJ, Nahl D, Rindflesch TC. Spark, an application based on Serendipitous Knowledge Discovery. 
J Biomed Inform. 2016 Apr;60:23-37. doi: 10.1016/j.jbi.2015.12.014. Epub 2015 Dec 28.
Morid MA, Fiszman M, Raja K, Jonnalagadda SR, Del Fiol G. Classification of clinically useful sentences in clinical evidence resources. 
J Biomed Inform. 2016 Apr;60:14-22. doi: 10.1016/j.jbi.2016.01.003. Epub 2016 Jan 13.
Hume S, Aerts J, Sarnikar S, Huser V. Current applications and future directions for the CDISC Operational Data Model standard: A methodological review. 
J Biomed Inform. 2016 Apr;60:352-62. doi: 10.1016/j.jbi.2016.02.016. Epub 2016 Mar 2.
Potter M, Yaniv Z. Cost-effective surgical registration using consumer depth cameras . 
Proc. SPIE 9786, Medical Imaging 2016: Image-Guided Procedures, Robotic Interventions, and Modeling, 97861W (March 24, 2016); doi:10.1117/12.2217515
Faruque J, Antani SK, Long LR, Kim L, Thoma GR. Image similarity ranking of focal computed tomography liver lesions using a 2AFC technique. 
Proc. SPIE. 9787, Medical Imaging 2016: Image Perception, Observer Performance, and Technology Assessment, 97870N. DOI: 10.1117/12.2217364.
Candemir S, Jaeger S, Lin W, Xue Z, Antani SK, Thoma GR. Automatic heart localization and radiographic index computation in chest x-rays. 
Proc. SPIE. 9785, Medical Imaging 2016: Computer-Aided Diagnosis, 978517. DOI: 10.1117/12.2217209.
Kilicoglu H, Demner-Fushman D. Bio-SCoRes: A Smorgasbord Architecture for Coreference Resolution in Biomedical Text. 
PLoS One. 2016 Mar 2;11(3):e0148538. doi: 10.1371/journal.pone.0148538. eCollection 2016.
Driessen J, Baik SH, Zhang Y. Explaining Improved Use of High-Risk Medications in Medicare Between 2007 and 2011. 
J Am Geriatr Soc. 2016 Mar;64(3):674-6. doi: 10.1111/jgs.14000.
Baik SH, Hernandez I, Zhang Y. Evaluating the Initiation of Novel Oral Anticoagulants in Medicare Beneficiaries. 
J Manag Care Spec Pharm. 2016 Mar;22(3):281-92. doi: 10.18553/jmcp.2016.22.3.281.
Demner-Fushman D, Kohli MD, Rosenman MB, Shooshan SE, Rodriguez L, Antani S, Thoma GR, McDonald CJ. Preparing a collection of radiology examinations for distribution and retrieval. 
J Am Med Inform Assoc. 2016 Mar;23(2):304-10. doi: 10.1093/jamia/ocv080. Epub 2015 Jul 1.
Lu C, Tormey D, McDreedy L, Browne AC. Generating SD-Rules in the SPECISLIST Lexical Tools - Optimization for suffix derivation rule set [Poster]. 
BIOSTEC 2016), Vol(5): HEALTHINF, Rome, Italy, February 21-23, 2016, p. 353-358 (9th International Conference on Health Informatics, HEALTHINF/BIOSTEC, 2016 Best Poster Award
KC S, Naved A, Roy PP, Wendling L, Antani SK, Thoma GR. Arrowhead detection in biomedical images. 
Proceedings IS&T Electronic Imaging, Document Recognition and Retrieval XXIII, 2016, pp. 1-7.
Dhombres F, Bodenreider O. Interoperability between phenotypes in research and healthcare terminologies--Investigating partial mappings between HPO and SNOMED CT. 
J Biomed Semantics. 2016 Feb 9;7:3. doi: 10.1186/s13326-016-0047-3. eCollection 2016.
Yaniv Z. Registration for Orthopaedic Interventions. 
Chapter 3 in: Zheng G, Li S, editors. Computational Radiology for Orthopaedic Interventions: Lecture Notes in Computational Vision and Biomechanics. Springer International Publishing; c2016. p. 41-70.
Guo P, Banerjee K, Stanley RJ, Long LR, Antani SK, Thoma GR, Frazier SR, Moss RH, Stoecker WV. Nuclei-Based Features for Uterine Cervical Cancer Histology Image Analysis with Fusion-based Classification. DOI 10.1109/JBHI.2015.2483318. 
IEEE Journal of Biomedical and Health Informatics
Karargyris A, Siegelman J, Tzortzis D, Jaeger S, Candemir S, Xue Z, KC S, Vajda S, Antani SK, Folio L, Thoma GR. Combination of texture and shape features to detect pulmonary abnormalities in digital chest X-rays. 
Int J Comput Assist Radiol Surg. 2016 Jan;11(1):99-106. doi: 10.1007/s11548-015-1242-x. Epub 2015 Jun 20.
Zhang K, Liu WL, Locatis CN, Ackerman MJ. Mobile Videoconferencing Apps for Telemedicine. 
Telemed J E Health. 2016 Jan;22(1):56-62. doi: 10.1089/tmj.2015.0027. Epub 2015 Jul 23.
Bodenreider O. Identifying missing hierarchical relations in SNOMED CT from logical definitions based on the lexical features of concept names. 
Proceedings of the 6th International Conference on Biomedical Ontology (ICBO 2016), 2016: p. (electronic proceedings: http://ceur-ws.org/Vol-1747/IT601_ICBO2016.pdf).
Kury F, Bodenreider O. Desiderata for drug classification systems for their use in analyzing large drug prescription datasets. 
Proceedings of the 3rd Workshop on Data Mining for Medical Informatics (DMMI 2016), 2016.
Webster RJ, Yaniv Z. Image-Guided Procedures, Robotic Interventions, and Modeling. 
Proc. SPIE 9786. (ISBN: 9781510600218 ).
McDonald CJ. Lister Hill National Center for Biomedical Communications Annual Report FY2015. . 
Lister Hill National Center for Biomedical Communications Annual Report FY2015.
Demner-Fushman D, Roberts K. Dataset: Question Decomposition Data. 
Demner-Fushman D, Roberts K. Dataset: Question Type Data. 
Roberts K, Shooshan SE, Rodriguez L, Abhyankar S, Kilicoglu H, Demner-Fushman D. The role of fine-grained annotations in supervised recognition of risk factors for heart disease from EHRs. 
J Biomed Inform. 2015 Dec;58 Suppl:S111-9. doi: 10.1016/j.jbi.2015.06.010. Epub 2015 Jun 26.
Lu C, Tormey D, MCreedy L, Browne AC. Generating the MEDLINE N-Gram Set [Poster]. 
AMIA 2015 Annual Symposium, San Francisco, CA, November 14-18, 2015, p. 1569.
Peters LB, Bodenreider O. Approaches to Supporting the Analysis of Historical Medication Datasets with RxNorm. 
AMIA Annu Symp Proc. 2015 Nov 5;2015:1034-41. eCollection 2015.
Roberts K, Rodriguez L, Shooshan SE, Demner-Fushman D. Automatic Extraction and Post-coordination of Spatial Relations in Consumer Language. 
AMIA Annu Symp Proc. 2015 Nov 5;2015:1083-92. eCollection 2015.
Rodriguez LM, Fushman DD. Automatic Classification of Structured Product Labels for Pregnancy Risk Drug Categories, a Machine Learning Approach. 
AMIA Annu Symp Proc. 2015 Nov 5;2015:1093-102. eCollection 2015.
Uy RC, Kury FP, Fontelo PA. The State and Trends of Barcode, RFID, Biometric and Pharmacy Automation Technologies in US Hospitals. 
AMIA Annu Symp Proc. 2015 Nov 5;2015:1242-51. eCollection 2015.
Morid MA, Jonnalagadda S, Fiszman M, Raja K, Del Fiol G. Classification of Clinically Useful Sentences in MEDLINE. 
AMIA Annu Symp Proc. 2015 Nov 5;2015:2015-24. eCollection 2015.
Cimino JJ, Huser V. Characterization of the Context of Drug Concepts in Research Protocols: An Empiric Study to Guide Ontology Development. 
AMIA Annu Symp Proc. 2015 Nov 5;2015:441-7. eCollection 2015.
Demner-Fushman D, Mork JG. Extracting Characteristics of the Study Subjects from Full-Text Articles. 
AMIA Annu Symp Proc. 2015 Nov 5;2015:484-91. eCollection 2015.
Kayaalp M, Browne AC, Sagan P, McGee T, McDonald CJ. Challenges and Insights in Using HIPAA Privacy Rule for Clinical Text Annotation. 
AMIA Annu Symp Proc. 2015 Nov 5;2015:707-16. eCollection 2015.
Kilicoglu H, Fiszman M, Roberts K, Demner-Fushman D. An Ensemble Method for Spelling Correction in Consumer Health Questions. 
AMIA Annu Symp Proc. 2015 Nov 5;2015:727-36. eCollection 2015.
Kury F, Huser V, Cimino JJ. Reproducing a Prospective Clinical Study as a Computational Retrospective Study in MIMIC-II. 
AMIA Annu Symp Proc. 2015 Nov 5;2015:804-13. eCollection 2015.
Pan X, Cimino JJ. Identifying the Clinical Laboratory Tests from Unspecified "Other Lab Test" Data for Secondary Use. 
AMIA Annu Symp Proc. 2015 Nov 5;2015:1018-23. eCollection 2015.
Xue Z, Candemir S, Antani SK, Long LR, Jaeger S, Demner-Fushman D, Thoma GR. Foreign Object Detection in Chest X-rays. 
Proc IEEE International Conference on Bioinformatics and Biomedicine (BIBM) 2015, International Workshop on Biomedical and Health Informatics, Bethesda, Maryland, Nov. 9-12, 2015, pp: 56-61.
Kayaalp M, Browne AC, Dodd ZA, Sagan P, McDonald CJ. An Easy-to-Use Clinical Text De-identification Tool for Clinical Scientists: NLM Scrubber [Poster]. 
Proceedings of the Annual American Medical Informatics Association Fall Symposium: 1522.
Szolovits P, Aberdeen J, Meystre S, Kayaalp M. Panel on: State of the Art of Clinical Narrative Report De-Identification and Its Future [Poster]. . 
Proceedings of the Annual American Medical Informatics Association Fall Symposium: 240–242.
Sorbello A, Ripple AM, Bodenreider O. A pilot study to support prospective detection of emerging adverse drug events [Poster]. 
AMIA Annu Symp Proc 2015:1699.
Rossi E, Fontelo P, Ackerman M, Pozzi G, Marceglia S. A Prototype of Mobile app/EHR Communication through Standards for Home Treatment of Transcranial Direct Current Stimulation. 
International Conference on Healthcare Informatics (ICHI), Dallas TX, 2015. 310-315.
Xu T, Xin C, Long LR, Antani SK, Xue Z, Kim E, Huang X. A New Image Data Set and Benchmark for Cervical Dysplasia Classification Evaluation. 
Machine Learning in Medical Imaging: 6th International Workshop, MLMI 2015, LNCS 9352, pp. 26–35, 2015. DOI: 10.1007/978-3-319-24888-2 4.
Rahman MM, Antani SK, Demner-Fushman D, Thoma GR. Biomedical image representation approach using visualness and spatial information in a concept feature space for interactive region-of-interest-based retrieval. 
J Med Imaging (Bellingham). 2015 Oct;2(4):046502. doi: 10.1117/1.JMI.2.4.046502. Epub 2015 Dec 30.
Winnenburg R, Sorbello A, Ripple AM, Harpaz R, Tonning J, Szarfman A, Francis H, Bodenreider O. Leveraging MEDLINE indexing for pharmacovigilance - Inherent limitations and mitigation strategies. 
J Biomed Inform. 2015 Oct;57:425-35. doi: 10.1016/j.jbi.2015.08.022. Epub 2015 Sep 2.
Fontelo P, Liu F, Uy RC. How does evidence affect clinical decision-making?. 
Evid Based Med. 2015 Oct;20(5):156-61. doi: 10.1136/ebmed-2015-110250. Epub 2015 Sep 2.
Antani SK. Automatic x-ray screening for tuberculosis. 
SPIE Newsroom. October 2015. DOI: 10.1117/2.1201509.006128
Huser V, Sastry C, Breymaier M, Idriss A, Cimino JJ. Standardizing data exchange for clinical research protocols and case report forms: An assessment of the suitability of the Clinical Data Interchange Standards Consortium (CDISC) Operational Data Model (ODM). 
J Biomed Inform. 2015 Oct;57:88-99. doi: 10.1016/j.jbi.2015.06.023. Epub 2015 Jul 15.
Kim I, Thoma GR. Automated Classification of Author’s Sentiments in Citation Using Machine Learning Techniques: A Preliminary Study. 
Proc. the 2015 IEEE Conf. Computational Intelligence in Bioinformatics and Computational Biology (CIBCB 2015), Niagara Falls, Canada, Aug. 12-15, 2015.
Demner-Fushman D, Kilicoglu H, Roberts K, Masterton K, Deardorff A. Consumer Health Question Answering to Automatically Support NLM Customer Services. 
September2015 Technical Report to the LHNCBC Board of Scientific Counselors
Folio, L, Sigelman, J, Wang, Y, Lu, P, Antani SK, Jaeger S. Automatic Identification and Classification of Tuberculosis Findings on Chest Radiographs for Global Surveillance Programs [Abstract]. 
Annual Meeting of the American Roentgen Ray Society (ARRS)
Payne TH, Corley S, Cullen TA, Gandhi TK, Harrington L, Kuperman GJ, Makar E, Mattison JE, McCallie DP, McDonald CJ, Tang PC, Tierney WM, Weaver C, Weir CR, Zaroukian MH. Report of the AMIA EHR-2020 Task Force on the status and future direction of EHRs. 
J Am Med Inform Assoc. 2015 Sep;22(5):1102-10. doi: 10.1093/jamia/ocv066. Epub 2015 May 28.
Dhombres F, Bodenreider O. Investigating the lexico-syntactic properties of phenotype terms – Application to interoperability between HPO and SNOMED CT. 
Proc Joint Bio-Ontologies and BioLINK ISMB'2015 SIG session "Phenotype Day" 2015:8-11.
Drawz PE, Archdeacon P, McDonald CJ, Powe NR, Smith KA, Norton J, Williams DE, Patel UD, Narva A. CKD as a Model for Improving Chronic Disease Care through Electronic Health Records. 
Clin J Am Soc Nephrol. 2015 Aug 7;10(8):1488-99. doi: 10.2215/CJN.00940115. Epub 2015 Jun 25.
Ruiz A, Allette K, Francis D, Lamping E, Jaeger S, Folio L, Apolo A. Patterns of soft tissue metastasis in patients with urothelial carcinoma using tumor volume heatmaps [Poster]. 
NIH Summer Research Program Poster Day, Aug 6, 2015
Marceglia S, Fontelo P, Rossi E, Ackerman MJ. A Standards-Based Architecture Proposal for Integrating Patient mHealth Apps to Electronic Health Record Systems. 
Appl Clin Inform. 2015 Aug 5;6(3):488-505. doi: 10.4338/ACI-2014-12-RA-0115. eCollection 2015.
Yaniv Z, Linte CA. Applications of Augmented Reality in the Operating Room. 
Chapter 19 in Fundamentals of Wearable Computers and Augmented Reality, 2nd ed. CRC Press, 2015.
Read KB, Sheehan JR, Huerta MF, Knecht LS, Mork JG, Humphreys BL. Sizing the Problem of Improving Discovery and Access to NIH-Funded Data: A Preliminary Study. 
PLoS One. 2015 Jul 24;10(7):e0132735. doi: 10.1371/journal.pone.0132735. eCollection 2015.
Roberts K, Simpson M, Demner-Fushman D, Voorhees E, Hersh W. State-of-the-art in biomedical literature retrieval for clinical cases: A survey of the TREC 2014 CDS Track. . 
Inf Retrieval J. 2015.
Candemir S, Borovikov E, KC S, Antani SK, Thoma GR. RSILC: Rotation- and Scale-Invariant, Line-based Color-aware descriptor. 
Image and Vision Computing, Volume 42, October 2015, Pages 1-12, ISSN 0262-8856. doi:10.1016/j.imavis.2015.06.010.
Gartrell K, Trinkoff AM, Storr CL, Wilson ML. Electronic Personal Health Record Use Among Nurses in the Nursing Informatics Community. 
Comput Inform Nurs. 2015 Jul;33(7):306-14. doi: 10.1097/CIN.0000000000000163.
Matheson NW, Ash JS (Interviewer and Editor), Sittig DF (Interviewer and Editor), Goodwin RM (Editor). The Woman Behind the NLM’s Integrated Advanced Information Management Systems (IAIMS) Initiative: 2005 Interview of Nina Matheson. 
Conversations with Medical Informatics Pioneers: An oral history project.
Ackerman MJ. The Educational Value of Truly Interactive Science Publishing. 
J Electronic Pub. 2015 Spring:18(2). DOI: http://dx.doi.org/10.3998/3336451.0018.201.
Detmer DE, Ash JS (Interviewer and Editor), Sittig DF (Interviewer and Editor), Goodwin RM (Editor). Fostering Health Policy and the Biomedical Informatics Profession: 2006 Interview of Don Detmer. 
Conversations with Medical Informatics Pioneers: An oral history project.
Fontelo P, Liu F, Yagi Y. Evaluation of a smartphone for telepathology: Lessons learned. 
J Pathol Inform. 2015 Jun 23;6:35. doi: 10.4103/2153-3539.158912. eCollection 2015.
KC S, Vajda S, Antani SK, Thoma GR. Automatic Pulmonary Abnormality Screening using Thoracic Edge Map. 
IEEE, 28th International Symposium on Computer-Based Medical Systems (CBMS), pp. 360-361, 2015.
KC S, Antani SK, Thoma GR. Stitched Multipanel Biomedical Figure Separation. 
IEEE, 28th International Symposium on Computer-Based Medical Systems (CBMS), pp. 54-59, 2015.
Xue Z, You D, Candemir S, Jaeger S, Antani SK, Long LR, Thoma GR. Chest X-ray Image View Classification. 
The 28th IEEE International Symposium on Computer-Based Medical Systems
Kilicoglu H, Rosemblat G, Cairelli M, Rindflesch TC. A Compositional Interpretation of Biomedical Event Factuality. 
Proc of the Second Workshop on Extra-Propositional Aspects of Meaning in Computational Semantics (ExProM 2015).
Marchell R, Locatis CN, Ackerman MJ. High definition live interactive and store and forward teledermatology: initial qualitative observations. . 
In W. Smari, W. McQuay, and M. Nygard (Eds.), Proc. IEEE 2015 International Conference on Collaboration Technologies and Systems, Atlanta, Georgia, June 1-5, 446-449.
Ayvas S, Horn J, Hassanzadeh O, Zhu Q, Stan J, Tatonetti NP, Vilar S, Brochhausen M8, Samwald M, Rastegar-Mojarad M, Dumontier M, Boyce RD. Toward a complete dataset of drug-drug interaction information from publicly available sources. 
J Biomed Inform. 2015 Jun;55:206-17. doi: 10.1016/j.jbi.2015.04.006. Epub 2015 Apr 24.
Cairelli MJ, Fiszman M, Zhang H, Rindflesch TC. Networks of neuroinjury semantic predications to identify biomarkers for mild traumatic brain injury. 
J Biomed Semantics. 2015 May 18;6:25. doi: 10.1186/s13326-015-0022-4. eCollection 2015.
Peters LB, Bahr N, Bodenreider O. Evaluating drug-drug interaction information in NDF-RT and DrugBank. 
J Biomed Semantics. 2015 May 11;6:19. doi: 10.1186/s13326-015-0018-0. eCollection 2015.
Cho D, Mork JG, Aronson A, Demner-Fushman D, Schmidt S, Ozga D, Pash J, Kilbourne J. MeSH on demand: an easy way to identify relevant MeSH terms and related articles from text [Poster]. 
National Cancer Institute (NCI) Symposium "RNA Biology 2015".
Liu WL, Zhang K, Locatis C, Ackerman M. Cloud and traditional videoconferencing technology for telemedicine and distance learning. 
Telemed J E Health. 2015 May;21(5):422-6. doi: 10.1089/tmj.2014.0121. Epub 2015 Mar 18.
Deckard J, McDonald CJ, Vreeman DJ. Supporting interoperability of genetic data with LOINC. 
J Am Med Inform Assoc. 2015 May;22(3):621-7. doi: 10.1093/jamia/ocu012. Epub 2015 Feb 5.
Bunt CW, Burke HB, Towbin AJ, Hoang A, Stephens MB, Fontelo P, Liu F, Gimbel RW. Point-of-Care Estimated Radiation Exposure and Imaging Guidelines Can Reduce Pediatric Radiation Burden. 
J Am Board Fam Med. 2015 May-Jun;28(3):343-50. doi: 10.3122/jabfm.2015.03.140251.
Winnenburg R, Sorbello A, Bodenreider O. Exploring adverse drug events at the class level. 
J Biomed Semantics. 2015 May 1;6:18. doi: 10.1186/s13326-015-0017-1. eCollection 2015.
Gartrell K, Storr CL, Trinkoff AM, Wilson ML, Gurses AP. Electronic personal health record use among registerednurses. 
Nurs Outlook. 2015 May-Jun;63(3):278-87. doi: 10.1016/j.outlook.2014.11.013. Epub 2014 Nov 28.
Fung KW, Xu J. An exploration of the properties of the CORE problem list subset and how it facilitates the implementation of SNOMED CT. 
J Am Med Inform Assoc. 2015 May;22(3):649-58. doi: 10.1093/jamia/ocu022. Epub 2015 Feb 26.
Barnett GO, Ash JS (Interviewer and Editor), Sittig DF (Interviewer and Editor), Goodwin RM (Editor). From "Farm Boy" to Director of the Laboratory of Computer Science: 2004 Interview of G. Octo Barnett. 
Conversations with Medical Informatics Pioneers: An oral history project.
McDonald CJ, Kalisch ELM, Barratt JD, Caughey GE. An international comparison of spontaneous adverse event reports and potentially inappropriate medicine use associated with dabigatran. 
Pharmacoepidemiol Drug Saf. 2015 Apr;24(4):399-405. doi: 10.1002/pds.3648. Epub 2014 May 20.
Warner HR, Sittig DF (Interviewer and Editor), Ash JS (Editor), Goodwin RM (Editor). Founder of the HELP System and the Utah Medical Informatics Program: 2005 Interview of Homer R. Warner, Sr. 
Conversations with Medical Informatics Pioneers: An oral history project.
Ash JS (Interviewer and Editor), Sittig DF (Interviewer and Editor), Goodwin RM (Editor). Introduction. 
Conversations with Medical Informatics Pioneers: An oral history project.
Lindberg, DAB, Ash JS (Interviewer and Editor), Sittig DF (Interviewer and Editor), Goodwin RM (Editor). At the helm of the world's largest biomedical library: 2005 Interviews with Donald A.B. Lindberg, MD. 
Conversations with Medical Informatics Pioneers: An oral history project.
Antani SK. Automated Detection of Lung Diseases in Chest X-Rays . 
April 2015 Technical Report to the LHNCBC Board of Scientific Counselors
Gartrell K, Trinkoff AM, Storr CL, Wilson ML, Gurses AP. Testing the Electronic Personal Health Record Acceptance Model by Nurses for Managing Their Own Health: A Cross-sectional Survey. 
Appl Clin Inform. 2015 Apr 8;6(2):224-47. doi: 10.4338/ACI-2014-11-RA-0107. eCollection 2015.
Jimeno Yepes AJ, Plaza L, Carrillo-de-Albornoz J, Mork JG, Aronson A. Feature engineering for MEDLINE citation categorization with MeSH. 
BMC Bioinformatics. 2015 Apr 8;16:113. doi: 10.1186/s12859-015-0539-7.
Marceglia S, Fontelo P, Ackerman MJ. Transforming consumer health informatics: connecting CHI applications to the health-IT ecosystem. 
J Am Med Inform Assoc. 2015 Apr;22(e1):e210-2. doi: 10.1093/jamia/ocu030. Epub 2015 Feb 8.
Abhyankar S, Goodwin RM, Sontag M, Yusuf C, Ojodu J, McDonald CJ. An update on the use of health information technology in newborn screening. 
Semin Perinatol. 2015 Apr;39(3):188-93. doi: 10.1053/j.semperi.2015.03.003. Epub 2015 Apr 29.
Zhu X, Cimino JJ. Clinicians' evaluation of computer-assisted medication summarization of electronic medical records. 
Comput Biol Med. 2015 Apr;59:221-31. doi: 10.1016/j.compbiomed.2013.12.006. Epub 2013 Dec 19.
Locatis CN, Gaines C, Liu WL, Gill MJ, Ackerman MJ. Lessons learned from ten years of distance learning outreach. 
J Med Libr Assoc. 2015 Apr;103(2):78-82. doi: 10.3163/1536-5050.103.2.004.
Cameron D, Kavuluru R, Rindflesch TC, Sheth AP, Thirunarayan K, Bodenreider O. Context-driven automatic subgraph creation for literature-based discovery. 
J Biomed Inform. 2015 Apr;54:141-57. doi: 10.1016/j.jbi.2015.01.014. Epub 2015 Feb 7.
Demner-Fushman D, Shooshan SE, Rodriguez L, Antani SK, Thoma GR. Annotation of Chest Radiology Reports for Indexing and Retrieval. 
Multimodal Retrieval in the Medical Domain 2015 (MRMD 2015), Vienna, Austria, March 29, 2015
Winnenburg R, Mortensen JM, Bodenreider O. Using description logics to evaluate the consistency of drug-class membership relations in NDF-RT. 
J Biomed Semantics. 2015 Mar 28;6:13. doi: 10.1186/s13326-015-0007-3. eCollection 2015.
Roberts K, Demner-Fushman D. Toward a Natural Language Interface for EHR Questions. 
AMIA Jt Summits Transl Sci Proc. 2015 Mar 25;2015:157-61. eCollection 2015.
Tao S, Cui L, Zhu W, Sun M, Bodenreider O, Zhang GQ. Mining Relation Reversals in the Evolution of SNOMED CT Using MapReduce. 
AMIA Jt Summits Transl Sci Proc. 2015 Mar 23;2015:46-50. eCollection 2015.
Zhang R, Adam TJ, Simon G, Cairelli MJ, Rindflesch T, Pakhomov S, Melton GB. Mining Biomedical Literature to Explore Interactions between Cancer Drugs and Dietary Supplements. 
AMIA Jt Summits Transl Sci Proc. 2015 Mar 23;2015:69-73. eCollection 2015.
Wei W, Demner-Fushman D, Wang S, Jiang X, Ohno-Machado L. Ranking Medical Subject Headings using a factor graph model. 
AMIA Jt Summits Transl Sci Proc. 2015 Mar 23;2015:56-63. eCollection 2015.
Xu T, Huang X, Kim E, Long LR, Antani SK. Multi-test cervical cancer diagnosis with missing data estimation. 
Proc. SPIE. 9414, Medical Imaging 2015: Computer-Aided Diagnosis, 94140X. (March 20, 2015) doi: 10.1117/12.2080871.
Gopal AD, Desai NR, Tse T, Ross JS. Reporting of noninferiority trials in ClinicalTrials.gov and corresponding publications. 
JAMA. 2015 Mar 17;313(11):1163-5. doi: 10.1001/jama.2015.1697.
Xue Z, You D, Chachra S, Antani SK, Long LR, Demner-Fushman D, Thoma GR. Extraction of endoscopic images for biomedical figure classification. 
Proc. SPIE. 9418, Medical Imaging 2015: PACS and Imaging Informatics: Next Generation and Innovations, 94180P. (March 17, 2015) doi: 10.1117/12.2081033.
Candemir S, Antani SK, Jaeger SR, Thoma GR. Lung boundary detection in pediatric chest x-rays. 
Proc. SPIE. 9418, Medical Imaging 2015: PACS and Imaging Informatics: Next Generation and Innovations, 94180Q. (March 17, 2015) doi: 10.1117/12.2081060.
Rahman MM, Antani SK, Demner-Fushman D, Thoma GR. A visual concept-based interactive biomedical image retrieval using entropy and spatial information. 
Proc. SPIE. 9418, Medical Imaging 2015: PACS and Imaging Informatics: Next Generation and Innovations, 94180U. (March 17, 2015) doi: 10.1117/12.2081456.
Zhang Y, Baik SH, Newhouse JP. Use of intelligent assignment to Medicare Part D plans for people with schizophrenia could produce substantial savings. 
Health Aff (Millwood). 2015 Mar;34(3):455-60. doi: 10.1377/hlthaff.2014.1227.
Hristovski D, Dinevski D, Kastrin A, Rindflesch TC. Biomedical question answering using semantic relations. 
BMC Bioinformatics. 2015 Jan 16;16:6. doi: 10.1186/s12859-014-0365-3.
Zarin D, Tse T, Sheehan J. The proposed rule for U.S. clinical trial trials.gov: submission. 
N Engl J Med. 2015 Jan 8;372(2):174-80. doi: 10.1056/NEJMsr1414226. Epub 2014 Dec 24.
Amini S, Kilicoglu H, Hooft L, ter Riet G. Are we expressing uncertainty of our claims enough? Towards automatic detection of overstatement of claims [Poster]. 
2015. World Conference on Research Integrity (WCRI).
Fu GE, Bolton NQ, Rosinach LI, Furlong V, Nguyen AP, Sheth O, Bodenreider O, Dumontier M. Exposing provenance metadata using different RDF models. 
Proceedings of the International Conference on Semantic Web Applications and Tools for Life Sciences (SWAT4LS 2015), 2015: p. (electronic proceedings: http://www.swat4ls.org/wp-content/uploads/2015/10/SWAT4LS_2015_paper_11.pdf).
KC S, Xue Z, Antani SK, Thoma GR. NLM at ImageCLEF 2015: Biomedical Multipanel Figure Separation. 
Editors: Cappellato, L., Ferro, N., Jones, G., and San Juan, E., CLEF 2015 Labs and Workshops, Notebook Papers. CEUR WorkshopProceedings (CEUR-WS.org), ISSN 1613-0073, http://ceur-ws.org/ Vol-1391/.
Simpson MS, You D, Rahman MM, Xue Z, Demner-Fushman D, Antani S, Thoma G. Literature-based biomedical image classification and retrieval. 
Comput Med Imaging Graph. 2015 Jan;39:3-13. doi: 10.1016/j.compmedimag.2014.06.006. Epub 2014 Jun 20.
Demner-Fushman D, Antani S, Kalpathy-Cramer J, Müller H. A decade of community-wide efforts in advancing medical image understanding and retrieval. 
Comput Med Imaging Graph. 2015 Jan;39:1-2. doi: 10.1016/j.compmedimag.2014.12.002.
Burke HB, Sessums LL, Hoang A, Becher DA, Fontelo P, Liu F, Stephens M, Pangaro LN, O'Malley PG, Baxi NS, Bunt CW, Capaldi VF 2nd, Chen JM, Cooper BA, Djuric DA, Hodge JA, Kane S, Magee C, Makary ZR, Mallory RM, Miller T, Saperstein A, Servey J, Gimbel RW. Electronic health records improve clinical note quality. 
J Am Med Inform Assoc. 2015 Jan;22(1):199-205. doi: 10.1136/amiajnl-2014-002726. Epub 2014 Oct 23.
Cohen KB, Demner-Fushman D. Biomedical Natural Language Processing. 
John Benjamins Publishing Company, 2014. DOI: 10.1075/nlp.11
Dhombres F, Winnenburg R, Case JT, Bodenreider O. Extending the coverage of phenotypes in SNOMED CT through post-coordination. 
Stud Health Technol Inform. 2015;216:795-9.
Hripcsak G, Duke JD, Shah NH, Reich CG, Huser V, Schuemie MJ, Suchard MA, Park RW, Wong IC, Rijnbeek PR, van der Lei J, Pratt N, Norén GN, Li YC, Stang PE, Madigan D, Ryan PB. Observational Health Data Sciences and Informatics (OHDSI): Opportunities for Observational Researchers. 
Stud Health Technol Inform. 2015;216:574-8.
Hristovski D, Kastrin A, Dinevski D, Rindflesch TC. Constructing a Graph Database for Semantic Literature-Based Discovery. 
Stud Health Technol Inform. 2015;216:1094.
Song D, Kim E, Huang X, Patruno J, Munoz-Avila H, Heflin J, Long LR, Antani SK. Multimodal entity coreference for cervical dysplasia diagnosis. . 
IEEE Transactions on Medical Imaging, 34(1), January 2015, 229-245.
KC S, Candemir S, Jaeger S, Folio L, Karargyris A, Antani SK, Thoma GR. Automatically detecting rotation in chest radiographs using principal rib-orientation measure for quality control. 
Int. J. Patt. Recogn. Artif. Intell, Vol 29 No. 2. DOI: 10.1142/S021800141.5570013
Kalpathy-Cramer J, de Herrera AG, Demner-Fushman D, Antani S, Bedrick S, Müller H. Evaluating performance of biomedical image retrieval systems--an overview of the medical image retrieval task at ImageCLEF 2004-2013. 
Comput Med Imaging Graph. 2015 Jan;39:55-61. doi: 10.1016/j.compmedimag.2014.03.004. Epub 2014 Mar 27.
Jaeger S. Detecting Disease in Radiographs with Intuitive Confidence. 
ScientificWorldJournal. 2015;2015:946793. doi: 10.1155/2015/946793. Epub 2015 Oct 1.
LHNCBC. Lister Hill National Center for Biomedical Communications Annual Report FY2014. 
Lister Hill National Center for Biomedical Communications Annual Report FY2014.
Kayaalp M, Dodd Z, Browne AC, Sagan, P, McDonald CJ. Software: NLM-Scrubber. 
Vajda S. Label the many with a few: Semi-automatic medical image modality discovery in a large image collection. 
IEEE Symposium Series on Computational Intelligence, Orlando, FL, Dec 9-12, 2014
Mishra R, Bian J, Fiszman M, Weir CR, Mostafa J, Fiol GD. Text summarization in the biomedical domain: a systematic review of recent research. 
J Biomed Inform. 2014 Dec;52:457-67. doi: 10.1016/j.jbi.2014.06.009. Epub 2014 Jul 10.
Shang N, Xu H, Rindflesch TC, Cohen T. Identifying plausible adverse drug reactions using knowledge extracted from the literature. 
J Biomed Inform. 2014 Dec;52:293-310. doi: 10.1016/j.jbi.2014.07.011. Epub 2014 Jul 19.
Cimino JJ, Ayres EJ, Remennik L, Rath S, Freedman R, Beri A, Chen Y, Huser V. The National Institutes of Health's Biomedical Translational Research Information System (BTRIS): design, contents, functionality and experience to date. 
J Biomed Inform. 2014 Dec;52:11-27. doi: 10.1016/j.jbi.2013.11.004. Epub 2013 Nov 19.
Lau AF, Wang H, Weingarten RA, Drake SK, Suffredini AF, Chen Y, Gucek M, Youn JH, Stock F, Tso H, DeLeo J, Cimino JJ, Frank KM, Dekker JP. Reply to "Tn4401 carrying blaKPC is inserted within another insertion in pKpQIL and related plasmids". 
J Clin Microbiol. 2014 Dec;52(12):4450. doi: 10.1128/JCM.02614-14.
Jaeger S, Candemir S, Antani SK, Wang, Lu P, Thoma GR. Two public chest X-ray datasets for computer-aided screening of pulmonary diseases. 
Quant Imaging Med Surg. 2014 Dec;4(6):475-7. doi: 10.3978/j.issn.2223-4292.2014.11.20.
Xue Z, Bryant B, Long LR, Sari-Sarraf H, Thoma GR, Wachtel M. A Client-Server Tool for Automatic Fast GPU-based Detection of Squamous Epithelium Tissue Regions in Histology Images [Poster]. 
RSNA 2014. Chicago, USA, Nov 30-Dec 5, 2014
Roberts K, Cahan A, Demner-Fushman D. Error Propagation in EHRs via Copy/Paste: An Analysis of Relative Dates [Poster]. 
Proceedings of the American Medical Informatics Association Fall Symposium (AMIA), Washington, D.C., Nov 15-19, 2014.
Rajaraman S, Jaeger S, Antani SK. Datasets: Tuberculosis Chest X-ray Datasets. 
Kayaalp M, Browne AC, Dodd Z, Sagan P, McDonald CJ. De-identification of Address, Date, and Alphanumeric Identifiers in Narrative Clinical Reports. 
AMIA Annu Symp Proc. 2014 Nov 14;2014:767-76. eCollection 2014.
Browne AC, Kayaalp M, Dodd Z, Sagan, P, McDonald CJ. The Challenges of Creating a Gold Standard for De-identification Research. 
AMIA Annu Symp Proc. 2014 Nov 14;2014:353-8. eCollection 2014.
Huser, V, Kayaalp M, Dodd Z, Cimino J. Piloting a deceased subject integrated data repository and protecting privacy of relatives. 
AMIA Annu Symp Proc. 2014 Nov 14;2014:719-28. eCollection 2014.
Lu C, Tormey D, McDreedy L, Browne AC. Using element words to generate (multi)words for the SPECIALIST Lexicon [Poster]. 
AMIA 2014 Annual Symposium, Washington, DC, November 15-19, 2014, p. 1499. Poster
Bodenreider O, Rodriguez L. Analyzing U.S. prescription lists with RxNorm and the ATC/DDD Index. 
AMIA Annu Symp Proc. 2014 Nov 14;2014:297-306. eCollection 2014.
Culbertson A, Fiszman M, Shin D, Rindflesch TC. Semantic processing to identify adverse drug event information from black box warnings. 
AMIA Annu Symp Proc. 2014 Nov 14;2014:442-8. eCollection 2014.
Ozturk S, Kayaalp M, McDonald CJ. Visualization of patient prescription history data in emergency care. 
AMIA Annu Symp Proc. 2014 Nov 14;2014:963-8. eCollection 2014.
Cimino JJ, Remennick L. Adapting a Clinical Data Repository to ICD-10-CM through the use of a Terminology Repository. 
AMIA Annu Symp Proc. 2014 Nov 14;2014:405-13. eCollection 2014.
Fung KW, Richesson R, Bodenreider O. Coverage of rare disease names in standard terminologies and implications for patients, providers, and research. 
AMIA Annu Symp Proc. 2014 Nov 14;2014:564-72. eCollection 2014.
Roberts K, Kilicoglu H, Fiszman M, Demner-Fushman D. Automatically classifying question types for consumer health questions. 
AMIA Annu Symp Proc. 2014 Nov 14;2014:1018-27. eCollection 2014.
Winnenburg R, Bodenreider O. Desiderata for an authoritative Representation of MeSH in RDF. 
AMIA Annu Symp Proc. 2014 Nov 14;2014:1218-27. eCollection 2014.
Harpaz R, Odgers D, Gaskin G, DuMouchel W, Winnenburg R, Bodenreider O, Ripple AM, Szarfman A, Sorbello A, Horvitz E, White RW, Shah NH. A time-indexed reference standard of adverse drug reactions. 
Sci Data. 2014 Nov 11;1:140043. doi: 10.1038/sdata.2014.43.
Rodriguez L, Huser V, Bodenreider O, Cimino J. Automatic coding of Free-Text Medication Data recorded by Research Coordinators [Poster]. 
AMIA Annu Symp Proc 2014:1565.
Gordon, E, Ersoy, I, Jaeger S, Waisberg, M, Pena, M, Thoma GR, Antani SK, Pierce, S, Palaniappan, K. Retinal Microcirculation Dynamics During an Active Malarial Infection [Poster]. 
Annual Meeting of the American Society of Tropical Medicine and Hygiene (ASTMH), 2014.
Winnenburg R, Bodenreider O. Desiderata for an authoritative representation of MeSH in RDF. 
AMIA Annu Symp Proc 2014:1218-1227.
McDonald CJ, Callaghan FM, Weissman A, Goodwin RM, Mundkur M, Kuhn T. Use of internist's free time by ambulatory care Electronic Medical Record systems. 
JAMA Intern Med. 2014 Nov;174(11):1860-3. doi: 10.1001/jamainternmed.2014.4506.
Wright A, Sittig DF, McGowan J, Ash JS, Weed LL. Bringing science to medicine: an interview with Larry Weed, inventor of the problem-oriented medical record. 
J Am Med Inform Assoc. 2014 Nov-Dec;21(6):964-8. doi: 10.1136/amiajnl-2014-002776. Epub 2014 May 28.
Khatipov E, Madden M, Chiang P, Chuang P, Nguyen D, D'Souza I, Winnenburg R, Bodenreider O, Skapik J, McClure R, Emrick S. Creating, maintaining and publishing value sets in the VSAC [Poster]. 
AMIA Annu Symp Proc, 2014: p. 1459.
Nguyen T, Peters L, Bodenreider O. RxClass - Navigating between drug classes and RxNorm drugs [Poster]. . 
AMIA Annu Symp Proc, 2014: p. 1529.
Ackerman MJ. Computer Briefs: But It's Only About Wellness. 
J Med Pract Manage. 2014 Sep-Oct;30(2):148-9.
Zhang R, Cairelli MJ, Fiszman M, Kilicoglu H, Rindflesch TC, Pakhomov SV, Melton GB. Exploiting Literature-derived Knowledge and Semantics to Identify Potential Prostate Cancer Drugs. 
Cancer Inform. 2014 Oct 14;13(Suppl 1):103-11. doi: 10.4137/CIN.S13889. eCollection 2014.
Bodenreider O, Peters L, Nguyen T. RxClass – Navigating between Drug Classes and RxNorm Drugs (Demo). 
Prc. ICBO 2014
Cohen T, Widdows D, Stephan C, Zinner R, Kim J, Rindflesch TC, Davies P. Predicting high-throughput screening results with scalable literature-based discovery methods. 
CPT Pharmacometrics Syst Pharmacol. 2014 Oct 8;3:e140. doi: 10.1038/psp.2014.37.
Kwon J, Burke DJ, Wang A, Boudreau HE, Lekstrom KJ, Korzeniowska A, Kim YS, Li L, Bunyak F, Jaeger S, Palaniappan K, Ambruso DR, Jackson SH, Leto TL. Peroxiredoxin 6 (Prdx6) supports NADPH oxidase1 (Nox1)-based reactive oxygen species generation and cell migration: collaboration of oxidant generating and scavenging systems [Poster]. 
NIH Research Festival 2014.
Rondonotti E, Koulaouzidis A, Karargyris A, Giannakou A, Fini L, Soncini M, Pennazio M, Douglas S, Shams A, Lachlan N, Zahid A, Mandelli G, Girelli C. Utility of 3-dimensional image reconstruction in the diagnosis ofsmall-bowel masses in capsule endoscopy (with video). 
Gastrointest Endosc. 2014 Oct;80(4):642-51. doi: 10.1016/j.gie.2014.04.057. Epub 2014 Jul 3.
Kim I, Le DX, Thoma GR. Automated method for extracting "citation sentences" from online biomedical articles using SVM-based text summarization technique. 
Proc. the 2014 IEEE Int'l Conf. on Systems, Man, and Cybernetics (SMC 2014), pp. 2006-2011, San Diego, October, 2014
Zhang GQ, Zhu W, Sun M, Tao S, Bodenreider O, Cui L. MaPLE: A MapReduce Pipeline for Lattice-based Evaluation and Its Application to SNOMED CT. 
Proc IEEE Int Conf Big Data. 2014 Oct;2014:754-759.
Collen MF, Sittig DF (Interviewer and Editor), Ash JS (Editor), Goodwin RM (Editor). Engineering Computerized Multiphasic Health Screening: 2005 Interview of Morris F. Collen, MD. 
Conversations with Medical Informatics Pioneers: An oral history project.
Bodenreider O, Winnenburg R. Drug Terminology and Ontology Integration -- Dissemination, Quality Assurance and Applications. 
September 2014 Technical Report to the LHNCBC Board of Scientific Counselors.
Huser V, Sincan M, Cimino JJ. Developing genomic knowledge bases and databases to support clinical management: current perspectives. 
Pharmgenomics Pers Med. 2014 Sep 9;7:275-83. doi: 10.2147/PGPM.S49904. eCollection 2014.
Burke HB, Hoang A, Becher D, Fontelo P, Liu F, Stephens M, Pangaro LN, Sessums LL, O'Malley P, Baxi NS, Bunt CW, Capaldi VF, Chen JM, Cooper BA, Djuric DA, Hodge JA, Kane S, Magee C, Makary ZR, Mallory RM, Miller T, Saperstein A, Servey J, Gimbel RW. QNOTE: an instrument for measuring the quality of EHR clinical notes. 
J Am Med Inform Assoc. 2014 Sep-Oct;21(5):910-6. doi: 10.1136/amiajnl-2013-002321. Epub 2014 Jan 2.
Rahman MM, You D, Simpson MS, Antani SK, Demner-Fushman D. Interactive Cross and Multimodal Biomedical Image Retrieval Based on Automatic Region-Of-Interest (ROI) Identification and Classification. 
International Journal of Multimedia Information Retrieval (MMIR) 2014 Sep;3(3):131-146.
Abhyankar S, Demner-Fushman D, Callaghan FM, McDonald CJ. Combining structured and unstructured data to identify a cohort of ICU patients who received dialysis. 
J Am Med Inform Assoc. 2014 Sep-Oct;21(5):801-7. doi: 10.1136/amiajnl-2013-001915. Epub 2014 Jan 2.
Hanauer DA, Saeed M, Zheng K, Mei Q, Shedden K, Aronson AR, Ramakrishnan N. Applying MetaMap to Medline for identifying novel associations in a large clinical dataset: a feasibility analysis. 
J Am Med Inform Assoc. 2014 Sep-Oct;21(5):925-37. doi: 10.1136/amiajnl-2014-002767. Epub 2014 Jun 13.
Do T, Murphy G, Earl LA, Del Prete GQ, Grandinetti G, Li GH, Estes JD, Rao P, Trubey CM, Thomas J, Spector J, Bliss D, Nath A, Lifson JD, Subramaniam S. Three-dimensional imaging of HIV-1 virological synapses reveals membrane architectures involved in virus transmission. 
J Virol. 2014 Sep;88(18):10327-39. doi: 10.1128/JVI.00788-14. Epub 2014 Jun 25.
KC S, Wendling L, Antani SK, Thoma GR. Scalable arrow detection in biomedical images. 
Pattern Recognition (ICPR), 2014 22nd International Conference; pp 3257-62. DOI: 10.1109/ICPR.2014.561
Linte CA, Yaniv Z, Fallavollita P, Abolmaesumi P, Holmes DR III, editors. Augmented Environments for Computer-Assisted Interventions 2014: 9th International AE-CAI Workshop. 
Held in conjunction with MICCAI 2014. 2014 Sep 14; Boston. Lecture Notes in Computer Science, vol. 8678. Springer; 2014. 149 pages.
Nagy DA, Haidegger T, Yaniv Z. A framework for semi-automatic fiducial localization in volumetric images. 
In: Linte CA, Yaniv Z, Fallavollita P, Abolmaesumi P, Holmes DR III, editors. Augmented Environments for Computer-Assisted Interventions 2014: Proceedings of 9th International AE-CAI Workshop; 2014 Sep 14; Boston. Lecture Notes in Computer Science vol. 8678. Springer; 2014. p. 138-48.
Hess CN, Roe MT, Gibson CM, Temple RJ, Pencina MJ, Zarin DA, Anstrom KJ, Alexander JH, Sherman RE, Fiedorek FT, Mahaffey KW, Lee KL, Chow SC, Armstrong PW, Califf RM. Independent data monitoring committees: preparing a path for the future. 
Am Heart J. 2014 Aug;168(2):135-41.e1. doi: 10.1016/j.ahj.2014.05.003. Epub 2014 May 15.
Lau AF, Wang H, Weingarten RA, Drake SK, Suffredini AF, Garfield MK, Chen Y, Gucek M, Youn JH, Stock F, Tso H, DeLeo J, Cimino JJ, Frank KM, Dekker JP. A rapid matrix-assisted laser desorption ionization-time of flight mass spectrometry-based method for single-plasmid tracking in an outbreak of carbapenem-resistant Enterobacteriaceae. 
J Clin Microbiol. 2014 Aug;52(8):2804-12. doi: 10.1128/JCM.00694-14. Epub 2014 May 21.
Boyce RD, Ryan PB, Noren GN, Schuemie MJ, Reich C, Duke J, Tatonetti NP, Trifiro G, Harpaz R, Overhage JM, Hartzema AG, Kayter M, Voss EA, Lambert CG, Huser V, Dumontier M. Bridging islands of information to establish an integrated knowledge base of drugs and health outcomes of interest. 
Drug Saf. 2014 Aug;37(8):557-67. doi: 10.1007/s40264-014-0189-0.
Winnenburg R, Bodenreider O. A framework for assessing the consistency of drug classes across sources. 
J Biomed Semantics. 2014 Jul 9;5:30. doi: 10.1186/2041-1480-5-30. eCollection 2014.
Kastrin A, Rindflesch TC, Hristovski D. Large-scale structure of a network of co-occurring MeSH terms: statistical analysis of macroscopic properties. 
PLoS One. 2014 Jul 9;9(7):e102188. doi: 10.1371/journal.pone.0102188. eCollection 2014.
Kilicoglu H, Demner-Fushman D. Coreference Resolution for Structured Drug Product Labels. 
Proceedings of BioNLP 2014. pp. 44-53.
Chen G, Cairelli MJ, Kilicoglu H, Shin D, Rindflesch TC. Augmenting microarray data with literature-based knowledge to enhance gene regulatory network inference. 
PLoS Comput Biol. 2014 Jun 12;10(6):e1003666. doi: 10.1371/journal.pcbi.1003666. eCollection 2014 Jun.
Zhang R, Cairelli MJ, Fiszman M, Rosemblat G, Kilicoglu H, Rindflesch TC, Pakhomov SV, Melton GB. Using semantic predications to uncover drug-drug interactions in clinical data. 
J Biomed Inform. 2014 Jun;49:134-47. doi: 10.1016/j.jbi.2014.01.004. Epub 2014 Jan 19.
KC S, Candemir S, Jaeger S, Folio L, Karargyris A, Antani SK, Thoma GR. Rotation detection in chest radiographs based on generalized line histogram of rib-orientations. 
IEEE 27th International Symposium on Computer-Based Medical Systems, New York, NY, USA, May 27-29, 2014: page 138-142.
Roberts K, Masterton K, Kilicoglu H, Fiszman M, Demner-Fushman D. Annotating Question Decomposition on Complex Medical Questions. 
LREC 2014.
Roberts K, Masterton K, Fiszman M, Kilicoglu H, Demner-Fushman D. Annotating Question Types for Consumer Health Questions. 
LREC 2014, BioTxtM workshop.
Roberts K, Kilicoglu H, Fiszman M, Demner-Fushman D. Decomposing consumer health questions. 
BioNLP 2014.
Del Fiol G, Workman TE, Gorman PN. Clinical questions raised by clinicians at the point of care: a systematic review. 
JAMA Intern Med. 2014 May;174(5):710-8. doi: 10.1001/jamainternmed.2014.368.
You D, Antani SK, Demner-Fushman D, Thoma GR. Does Figure-Text Improve Biomedical Article Retrieval? A Pilot Study. 
CBMS 2014. May 2014.
You D, Antani SK, Demner-Fushman D, Thoma GR. A MRF Model for Biomedical Image Segmentation. 
CBMS 2014. May 2014.
Ackerman MJ. The medical data tsunami. 
J Med Pract Manage. 2014 May-Jun;29(6):406-7.
Kayaalp M, Browne AC, Callaghan FM, Dodd Z, Divita G, Ozturk S, McDonald CJ. The pattern of name tokens in narrative clinical text and a comparison of five systems for redacting them. 
J Am Med Inform Assoc. 2014 May-Jun;21(3):423-31. doi: 10.1136/amiajnl-2013-001689. Epub 2013 Sep 11.
Xue Z, Antani SK, Long LR, Demner-Fushman D, Thoma GR. Body Segment Classification for Visible Human Cross Section Slices. 
IEEE 27th International Symposium on Computer-Based Medical Systems (CBMS), New York, NY, May 2014: pp. 199-204
Ren H, Campos-Nanez E, Yaniv Z, Banovac F, Abeledo H, Hata N, Cleary K. Treatment planning and image guidance for radiofrequency ablation of large tumors. 
IEEE J Biomed Health Inform. 2014 May;18(3):920-8. doi: 10.1109/JBHI.2013.2287202. Epub 2013 Oct 24.
Yaniv Z, Holmes DR III, editors. Medical Imaging 2014: Image-Guided Procedures, Robotic Interventions, and Modeling. 
Proceedings of conference held 2014 Feb 15-20; San Diego. Proc. SPIE 9036; 2014 Mar 12. 764 pages. ISBN: 9780819498298.
Nguyen V, Bodenreider O, Sheth AP. Don't Like RDF Reification? Making Statements about Statements Using Singleton Property. 
Proc Int World Wide Web Conf. 2014 Apr 11;2014:759-770.
Yoo TS, Ackerman MJ, Chen D, Lowekamp B, Kuybeda O, Santoroski J. 3D Informatics. 
April 2014 Technical Report to the LHNCBC Board of Scientific Counselors.
Callaghan FM, Leishear K, Abhyankar S, Demner-Fushman D, McDonald CJ. High vitamin B12 levels are not associated with increased mortality risk for ICU patients after adjusting for liver function: a cohort study. 
ESPEN J. 2014 Apr 1;9(2):e76-e83.
Hartung DM, Zarin D, Guise JM, McDonagh M, Paynter R, Helfand M. Reporting discrepancies between the ClinicalTrials.gov results database and peer-reviewed publications. 
Ann Intern Med. 2014 Apr 1;160(7):477-83. doi: 10.7326/M13-0480.
Cimino JJ, Frisse ME, Halamka J, Sweeney L, Yasnoff W. Consumer-mediated health information exchanges: the 2012 ACMI debate. 
J Biomed Inform. 2014 Apr;48:5-15. doi: 10.1016/j.jbi.2014.02.009. Epub 2014 Feb 20.
Linte CA, Yaniv Z. When change happens: computer assistance and image guidance for minimally invasive therapy. 
Healthcare Technology Letters. 2014 Mar 25;1(1):2-5.
Pedrosa G, Rahman MM, Antani SK, Demner-Fushman D, Long LR, Traina A. Integrating visual words as bunch of n-grams for effective biomedical image classification. . 
Proceedings of IEEE WACV 2014: IEEE Winter Conference on Applications of Computer Vision. Steamboat Springs, CO. March 24-26, 2014.
Xue Z, You D, Antani SK, Long LR, Demner-Fushman D, Thoma GR. Classification of Visual Signs in Abdominal CT Image Figures in Biomedical Literature. 
Proc. SPIE. 9039. Medical Imaging 2014: PACS and Imaging Informatics: Next Generation and Innovations. 90390T.
Rahman MM, Antani SK, Demner-Fushman D, Thoma GR. Biomedical image representation and classification using an entropy-weighted probabilistic concept feature space. 
Proc. SPIE. 9039. Medical Imaging 2014: PACS and Imaging Informatics: Next Generation and Innovations. 90390G.
Gong RH, Jenkins B, Sze RW, Yaniv Z. A cost effective and high fidelity fluoroscopy simulator using the image-guided surgery toolkit (IGSTK). 
In: Yaniv Z, Holmes DR III, editors. Medical Imaging 2014: Image-Guided Procedures, Robotic Interventions, and Modeling; 2014 Feb 15-20; San Diego. Proc. SPIE 9036; 2014 Mar 12:11 pages. DOI: 10.1117/12.2044112.
Guler, O, Yaniv Z. A tutorial on image guided therapy. 
Chapter 11 in: Birkfellner W, editor. Applied Medical Image Processing, Second Edition: A Basic Course. London: CRC Press; 2014. ISBN: 9781466555570.
Zarin DA, Tse T, Menikoff J. Federal human research oversight of clinical trials in the United States. 
JAMA. 2014 Mar 5;311(9):960-1. doi: 10.1001/jama.2013.284306.
Narayan K, Danielson CM, Lagarec K, Lowekamp BC, Coffman P, Laquerre A, Phaneuf MW, Hope TJ, Subramaniam S. Multi-resolution correlative focused ion beam scanning electron microscopy: applications to cell biology. 
J Struct Biol. 2014 Mar;185(3):278-84. doi: 10.1016/j.jsb.2013.11.008. Epub 2013 Dec 1.
Caudle KE, Klein TE, Hoffman JM, Muller DJ, Whirl-Carrillo M, Gong L, McDonagh EM, Sangkuhl K, Thorn CF, Schwab M, Agundez JA, Freimuth RR, Huser V, Lee MT, Iwuchukwu OF, Crews KR, Scott SA, , Wadelius M, Swen JJ, Tyndale RF, Stein CM, Roden D, Relling MV, Williams MS, Johnson SG. Incorporation of pharmacogenomics into routine clinical practice: the Clinical Pharmacogenetics Implementation Consortium (CPIC) guideline development process. 
Curr Drug Metab. 2014 Feb;15(2):209-17.
Jaeger S, Karargyris A, Candemir S, Folio L, Siegelman J, Callaghan FM, Xue Z, Palaniappan K, Singh RK, Antani SK, Thoma GR, Wang, Lu P, McDonald CJ. Automatic tuberculosis screening using chest radiographs. 
IEEE Trans Med Imaging. 2014 Feb;33(2):233-45. doi: 10.1109/TMI.2013.2284099. Epub 2013 Oct 1.
Candemir S, Jaeger S, Palaniappan K, Musco J, Singh RK, Xue Z, Karargyris A, Antani SK, Thoma GR, McDonald CJ. Lung segmentation in chest radiographs using anatomical atlases with nonrigid registration. 
IEEE Trans Med Imaging. 2014 Feb;33(2):577-90. doi: 10.1109/TMI.2013.2290491. Epub 2013 Nov 13.
You D, Antani SK, Demner-Fushman D, Thoma GR. A Contour-based Shape Descriptor For Biomedical Image Classification and Retrieval. 
Proceedings of SPIE 2014, Vol. 9021, Document Recognition and Retrieval XXI. February 2014;9021.
Bekhuis T, Tseytlin E, Mitchell KJ, Demner-Fushman D. Feature engineering and a proposed decision-support system for systematic reviewers of medical evidence. 
PLoS One. 2014 Jan 27;9(1):e86277. doi: 10.1371/journal.pone.0086277. eCollection 2014.
Ripple AM, Mork JG, Schmidt SC, Thomson H, Knecht LS. Performance Comparison of MEDLINE Structured Abstract to Unstructured Abstracts [Poster]. 
2014 NIH Research Festival.
Mork JG, Demner-Fushman D, Schmidt SC, Aronson A. Vocabulary Density Method for Personalized Indexing of MEDLINE Journals [Poster]. 
2014 AMIA Symposium.
Mork JG, Demner-Fushman D, Schmidt SC, Aronson A. Recent Enhancements to the NLM Medical Text Indexer. . 
BioASQ 2014.
Jing X, Cimino JJ. A complementary graphical method for reducing and analyzing large data sets. Case studies demonstrating thresholds setting and selection. 
Methods Inf Med. 2014;53(3):173-85. doi: 10.3414/ME13-01-0075. Epub 2014 Apr 14.
Winnenburg R, Bodenreider O. Coverage of human phenotypes in SNOMED CT [Poster]. 
SNOMED CT Implementation Showcase, 2014.
Osborne R, Aronson A, Cohen K. A repository of semantic types in the MIMIC II database clinical notes. . 
BioNLP 2014. pp. 93-97.
Kastrin A, Rindflesch TC, Hristovski D. Link prediction in a MeSH co-occurrence network: preliminary results. 
Stud Health Technol Inform. 2014;205:579-83.
Huser V, Cimino JJ. Don't take your EHR to heaven, donate it to science: legal and research policies for EHR post mortem. 
J Am Med Inform Assoc. 2014 Jan-Feb;21(1):8-12. doi: 10.1136/amiajnl-2013-002061. Epub 2013 Aug 21.
Ackerman MJ. Computer briefs: The EMR: more than just a record. 
J Med Pract Manage. 2014 Jan-Feb;29(4):266-7.
Bodenreider O. Multi-lingual features of the Unified Medical Language System. 
Proc. CLEF-ER 2013 workshop 2013.
Cohen T, Widdows D, Rindflesch TC. Expansion-by-analogy: A vector symbolic approach to semantic search. . 
AAAI-Fall 2014 Symposium on Quantum Informatics for Cognitive, Social, and Semantic Processes.
Roberts K, Shooshan SE, Rodriguez L, Abhyankar S, Kilicoglu H, Demner-Fushman D. Machine Learning Methods for Detecting Risk Factors for Heart Disease in EHRs. 
Proc i2b2 2014 Workshop
Winnenburg R, Bodenreider O. Evaluating the consistency of inferred drug-class membership relations in NDF-RT. 
Proc 17th ISMB'2014 SIG meeting "Bio-Ontologies"2014
Winnenburg R, Bodenreider O. Coverage of phenotypes in standard terminologies. 
Joint Bio-Ontologies and BioLINK ISMB'2014 SIG session "Phenotype Day"2014:41-44.
McDonald CJ, Tang PC, Hripcsak G. Electronic Health Record Systems. 
. In: Shortliffe EH, Cimino JJ, editors. Biomedical Informatics: Computer Applications in Healthcare and Biomedicine 4th ED [Internet]. London: Springer London; 2014. p. 391–421. Available from: http://link.springer.com/10.1007/978-1-4471-4474-8.
Goldbach H, Chang AY, Kyer A, Ketshogileng D, Taylor L, Chandra A, Dacso M, Kung SJ, Rijken T, Fontelo P, Littman-Quinn R, Seymour AK, Kovarik CL. Evaluation of generic medical information accessed via mobile phones at the point of care in resource-limited settings. 
J Am Med Inform Assoc. 2014 Jan-Feb;21(1):37-42. doi: 10.1136/amiajnl-2012-001276. Epub 2013 Mar 27.
Kastrin A, Rindflesch TC, Hristovski D. Link prediction on the Semantic MEDLINE Network. . 
Proceedings of the 17th International conference on Discovery Science.
Lowekamp BC, Chen DT, Ibáñez L, Blezek D. The Design of SimpleITK. 
Front Neuroinform. 2013 Dec 30;7:45. doi: 10.3389/fninf.2013.00045. eCollection 2013.
Chachra S, Xue Z, Antani SK, Demner-Fushman D, Thoma GR. Extraction and Labeling High-resolution Images from PDF Documents. 
Proc. SPIE 9021, Document Recognition and Retrieval XXI, 90210Q (December 27, 2013). doi:10.1117/12.2042336.
Kilicoglu H, Fiszman M, Demner-Fushman D. Interpreting Consumer Health Questions: The Role of Anaphora and Ellipsis. 
Proceedings of BioNLP 2013. Pages 54-62.
Van Der Volgen J, Harris BR, Demner-Fushman D. Analysis of Consumer Health Questions for Development of Question-Answering Technology [Poster]. 
Proceedings of One HEALTH: Information in an Interdependent World, the 2013 Annual Meeting and Exhibition of the Medical Library Association (MLA), 2013.
Schulz S, Balkanyi L, Cornet R, Bodenreider O. From concept representations to ontologies: a paradigm shift in health informatics?. 
Healthc Inform Res. 2013 Dec;19(4):235-42. doi: 10.4258/hir.2013.19.4.235. Epub 2013 Dec 31.
Bodenreider O. Disease Ontologies. 
In: Dubitzky W, Wolkenhauer O, Cho K-H, Yokota H, editors. Encyclopedia of Systems Biology: Springer; 2013. p. 578-581.
Fontelo P, Gavino A, Sarmiento RF. Comparing data accuracy between structured abstracts and full-text journal articles: implications in their use for informing clinical decisions. 
Evid Based Med. 2013 Dec;18(6):207-11. doi: 10.1136/eb-2013-101272. Epub 2013 Jun 20.
Gavino AI, Ho BL, Wee PA, Marcelo AB, Fontelo P. Information-seeking trends of medical professionals and students from middle-income countries: a focus on the Philippines. 
Health Info Libr J. 2013 Dec;30(4):303-17. doi: 10.1111/hir.12032. Epub 2013 Jul 23.
Rosemblat G, Shin D, Kilicoglu H, Sneiderman C, Rindflesch TC. A methodology for extending domain coverage in SemRep. 
J Biomed Inform. 2013 Dec;46(6):1099-107. doi: 10.1016/j.jbi.2013.08.005. Epub 2013 Aug 21.
Karargyris A, Rondonotti E, Mandelli G, Koulaouzidis A. Evaluation of 4 three-dimensional representation algorithms in capsule endoscopy images. 
World J Gastroenterol. 2013 Nov 28;19(44):8028-33. doi: 10.3748/wjg.v19.i44.8028.
Lowekamp B, Chen D. BinShrink: A multi-resolution filter with cache efficient averaging. . 
Insight Journal. Web. 18 November 2013
Abhyankar S, Demner-Fushman D. A simple method to extract key maternal data from neonatal clinical notes. 
AMIA Annu Symp Proc. 2013 Nov 16;2013:2-9. eCollection 2013.
Cairelli MJ, Miller CM, Fiszman M, Workman TE, Rindflesch TC. Semantic MEDLINE for discovery browsing: using semantic predications and the literature-based discovery paradigm to elucidate a mechanism for the obesity paradox. 
AMIA Annu Symp Proc. 2013 Nov 16;2013:164-73. eCollection 2013.
Cimino JJ, Overby CL, Devine EB, Hulse NC, Jing X, Maviglia SM, Del Fiol G. Practical choices for infobutton customization: experience from four sites. 
AMIA Annu Symp Proc. 2013 Nov 16;2013:236-45. eCollection 2013.
Demner-Fushman D, Mork JG, Aronson AR. Mining MEDLINE for problems associated with vitamin D. 
AMIA Annu Symp Proc. 2013 Nov 16;2013:300-8. eCollection 2013.
Fontelo P, Liu F. Mobile app versus Web app: a comparison using 2008-2012 "PubMed for Handhelds" server data. 
AMIA Annu Symp Proc. 2013 Nov 16;2013:445-50. eCollection 2013.
Huser V, Cimino JJ. Desiderata for healthcare integrated data repositories based on architectural comparison of three public repositories. 
AMIA Annu Symp Proc. 2013 Nov 16;2013:648-56. eCollection 2013.
Yepes AJ, Mork JG, Demner-Fushman D, Aronson AR. Comparison and combination of several MeSH indexing approaches. 
AMIA Annu Symp Proc. 2013 Nov 16;2013:709-18. eCollection 2013.
Lu C, Tormey D, McDreedy L, Browne AC. Implementing comprehensive derivational features in Llexical tools using a systematical approach [Poster]. 
AMIA 2013 Annual Symposium, Washington, DC, November 16-20, 2013, p. 904
Sheets L, Liu F, Sarmiento RF, Gavino A, Fontelo P. Optimizing the txt2MEDLINE search portal for low-resource clinical decision support. 
AMIA Annu Symp Proc. 2013 Nov 16;2013:1277-81. eCollection 2013.
Winnenburg R, Bodenreider O. Metrics for assessing the quality of value sets in clinical quality measures. 
AMIA Annu Symp Proc. 2013 Nov 16;2013:1497-505. eCollection 2013.
Workman TE, Rosemblat G, Fiszman M, Rindflesch TC. A literature-based assessment of concept pairs as a measure of semantic relatedness. 
AMIA Annu Symp Proc. 2013 Nov 16;2013:1512-21. eCollection 2013.
Mishra R, Del Fiol G, Kilicoglu H, Jonnalagadda S, Fiszman M. Automatically extracting clinically useful sentences from UpToDate to support clinicians' information needs. 
AMIA Annu Symp Proc. 2013 Nov 16;2013:987-92. eCollection 2013.
Borovikov E, Vajda S, Lingappa G, Candemir S, Antani SK, Gill MJ, Thoma GR. FaceMatch: visual search of missing persons during a disaster event [Poster]. 
NIH Intramural Research Festival, Bethesda MD, November 6-8, 2013.
Karargyris A, Candemir S, Jaeger S, Xue Z, Antani SK, Thoma GR. A Combined Approach for Lung Boundary Segmentation of Chest X-Ray Images [Poster]. 
NIH Intramural Research Festival, Bethesda MD, November 6-8, 2013.
Xue Z, Jaeger S, Karargyris A, Candemir S, Antani SK, Long LR, Thoma GR, McDonald CJ. A System for Automated Screening for Tuberculosis using Digital Chest X-rays for Resources-Constrained Regions [Poster]. 
NIH Intramural Research Festival, Bethesda MD, November 6-8, 2013.
Rahman MM, Antani SK, Demner-Fushman D, Thoma GR. An Interactive Region-Of-interest (ROI)- Based Image Retrieval Approach of Biomedical Articles in a Local Concept- Based Feature Space [Poster]. 
NIH Intramural Research Festival, Bethesda MD, November 6-8, 2013.
You D, Antani SK, Demner-Fushman D, Thoma GR. Does figure-text improve biomedical image retrieval [Poster]. 
NIH Intramural Research Festival, Bethesda MD, November 6-8, 2013.
Karargyris A, Folio L, Siegelman J, Callaghan FM, Candemir S, Xue Z, Lu P-X, Wang, Antani SK, Thoma GR, Jaeger S. Comparing the Performance of Man and Machine for TB Screening in Chest Radiographs [Poster]. 
NIH Intramural Research Festival, Bethesda MD, November 6-8, 2013.
Le T, Rance B, Bodenreider O. Network visualization of UMLS source vocabularies using semantic groups. 
AMIA Annu Symp Proc, 2013: p. 90
Johnson HL, Fontelo P, Olsen CH, Jones KD, Gimbel RW. Family nurse practitioner student perception of journal abstract usefulness in clinical decision making: a randomized controlled trial. 
J Am Assoc Nurse Pract. 2013 Nov;25(11):597-603. doi: 10.1111/1745-7599.12013. Epub 2013 Mar 6.
Peters L, Nguyen T, Bodenreider O. Displaying drug classes in RxNav [Poster]. 
AMIA Annu Symp Proc, 2013: p. 1134.
McDonald CJ. Toward electronic medical record alerts that consume less physician time. 
JAMA Intern Med. 2013 Oct 14;173(18):1755-6. doi: 10.1001/jamainternmed.2013.9332.
Rosemblat G, Resnick MP, Auston I, Shin D, Sneiderman C, Fizsman M, Rindflesch TC. Extending SemRep to the Public Health Domain. 
J Am Soc Inf Sci Technol. 2013 Oct;64(10):1963-1974.
Friedman C, Rindflesch TC, Corn M. Natural language processing: state of the art and prospects for significant progress, a workshop sponsored by the National Library of Medicine. 
J Biomed Inform. 2013 Oct;46(5):765-73. doi: 10.1016/j.jbi.2013.06.004. Epub 2013 Jun 25.
LHNCBC. Lister Hill National Center for Biomedical Communications Annual Report FY2013. 
Lister Hill National Center for Biomedical Communications FY2013 Annual Report.
Gordon E, Waisberg M, Ersoy I, Pena M, Jaeger S, Pierce S. The eye as a window to investigate the CNS microvasculature during a dynamic malaria infection (Abstract). 
Third Annual Seminar on Molecular Imaging of Infectious Diseases, September 23, 2013.
Karargyris A, Koulaouzidis A. Capsule-odometer: a concept to improve accurate lesion localisation. 
World J Gastroenterol. 2013 Sep 21;19(35):5943-6. doi: 10.3748/wjg.v19.i35.5943.
Kayaalp M, Browne AC, Dodd Z, Sagan P, McDonald CJ. Clinical Text De-Identification Research. 
September 2013 Technical Report to the LHNCBC Board of Scientific Counselors
Xue Z, Antani SK, Long LR, Demner-Fushman D, Thoma GR. Classification of CT Figures in Biomedical Articles Based on Body Segments. 
2013 IEEE International Conference on Healthcare Informatics (ICHI), pp.264,268, 9-11 Sept. 2013. doi: 10.1109/ICHI.2013.17.
Jonnalagadda SR, Del Fiol G, Medlin R, Weir C, Fiszman M, Mostafa J, Liu H. Automatically extracting sentences from Medline citations to support clinicians' information needs. 
J Am Med Inform Assoc. 2013 Sep-Oct;20(5):995-1000. doi: 10.1136/amiajnl-2012-001347. Epub 2012 Oct 25.
Ackerman MJ. Computer briefs: the healthcare trifecta. 
J Med Pract Manage. 2013 Sep-Oct;29(2):140-1.
Borovikov E, Vajda S, Lingappa G, Antani SK, Thoma GR. Face matching for post-disaster family reunification. 
IEEE International Conference on Healthcare Informatics. Philadelphia, PA, USA. September 2013.
Fung K, Kayaalp M, Callaghan FM, McDonald CJ. Comparison of electronic pharmacy prescription records with manually collected medication histories in an emergency department. 
Ann Emerg Med. 2013 Sep;62(3):205-11. doi: 10.1016/j.annemergmed.2013.04.014. Epub 2013 May 18.
Kang YS, Kayaalp M. Extracting laboratory test information from biomedical text. 
J Pathol Inform. 2013 Aug 31;4:23. doi: 10.4103/2153-3539.117450. eCollection 2013.
Zarin D. Participant-level data and the new frontier in trial transparency [Letter]. 
N Engl J Med. 2013 Aug 1;369(5):468-9. doi: 10.1056/NEJMe1307268.
Kim J, Le DX, Thoma GR. Identification of Investigator Name Zones Using SVM Classifiers and Heuristic Rules. 
12th international Conference on Document Analysis and Recognition (ICDAR). Washington D.C., August 2013.
Zhang K, Liu WL, Locatis C, Ackerman M. Uncompressed high-definition videoconferencing tools for telemedicine and distance learning. 
Telemed J E Health. 2013 Aug;19(8):579-84. doi: 10.1089/tmj.2012.0219. Epub 2013 Jun 29.
Hersh WR, Weiner MG, Embi PJ, Logan JR, Payne PR, Bernstam EV, Lehmann HP, Hripcsak G, Hartzog TH, Cimino J, Saltz JH. Caveats for the use of operational electronic health record data in comparative effectiveness research. 
Med Care. 2013 Aug;51(8 Suppl 3):S30-7. doi: 10.1097/MLR.0b013e31829b1dbd.
Winnenburg R, Rodriguez L, Callaghan F, Sorbello A, Szarfman A, Bodenreider O. Aligning Pharmacologic Classes Between MeSH and ATC. 
4th International Conference on Biomedical Ontology · ICBO 2013
Huser V, Cimino JJ. Linking ClinicalTrials.gov and PubMed to track results of interventional human clinical trials. 
PLoS One. 2013 Jul 9;8(7):e68409. doi: 10.1371/journal.pone.0068409. Print 2013.
Zarin D, Tse T. Trust but verify: trial registration and determining fidelity to the protocol [Letter]. 
Ann Intern Med. 2013 Jul 2;159(1):65-7. doi: 10.7326/0003-4819-159-1-201307020-00011.
Gimbel RW, Fontelo P, Stephens MB, Olsen CH, Bunt C, Ledford CJ, Loveland Cook CA, Liu F, Burke HB. Radiation exposure and cost influence physician medical image decision making: a randomized controlled trial. 
Med Care. 2013 Jul;51(7):628-32. doi: 10.1097/MLR.0b013e3182928fd5.
Jimeno-Yepes AJ, Plaza L, Mork JG, Aronson AR, Díaz A. MeSH indexing based on automatically generated summaries. 
BMC Bioinformatics. 2013 Jun 26;14:208. doi: 10.1186/1471-2105-14-208.
Huser V, Cimino JJ. Evaluating adherence to the International Committee of Medical Journal Editors' policy of mandatory, timely clinical trial registration. 
J Am Med Inform Assoc. 2013 Jun;20(e1):e169-74. doi: 10.1136/amiajnl-2012-001501. Epub 2013 Feb 9.
Jimeno-Yepes AJ, Sticco JC, Mork JG, Aronson AR. GeneRIF indexing: sentence selection based on machine learning. 
BMC Bioinformatics. 2013 May 31;14:171. doi: 10.1186/1471-2105-14-171.
Workman TE, Fiszman M, Rindflesch TC, Nahl D. Framing Serendipitous Information Seeking Behavior for Facilitating Literature-Based Discovery: A Proposed Model. . 
Journal of the American Society for Information Science and Technology 2013, in press.
Ross JS, Mocanu M, Lampropulos JF, Tse T, Krumholz HM. Time to publication among completed clinical trials. 
JAMA Intern Med. 2013 May 13;173(9):825-8. doi: 10.1001/jamainternmed.2013.136.
Ackerman MJ. Computer briefs: Blue Cross, Blue Shield, Blue Button. 
J Med Pract Manage. 2013 May-Jun;28(6):394-5.
Fung KW, Jao CS, Demner-Fushman D. Extracting drug indication information from structured product labels using natural language processing. 
J Am Med Inform Assoc. 2013 May 1;20(3):482-8. doi: 10.1136/amiajnl-2012-001291. Epub 2013 Mar 9.
Zarin D, Tse T. Clarification about ClinicalTrials.gov [Letter]. 
IRB. 2013 May-Jun;35(3):19.
Yepes AJ, Prieur-Gaston E, Névéol A. Combining MEDLINE and publisher data to create parallel corpora for the automatic translation of biomedical text. 
BMC Bioinformatics. 2013 Apr 30;14:146. doi: 10.1186/1471-2105-14-146.
Abhyankar S, McDonald CJ. Overweight, obesity, and all-cause mortality [Letter]. 
JAMA. 2013 Apr 24;309(16):1680-1. doi: 10.1001/jama.2013.3092.
Zarin DA, Williams RJ, Bergeris AM, Dobbins H, Ide NC, Loane RF, Robbins A, Tse T. ClinicalTrials.gov and Related Projects: Improving Access to Information about Clinical Trials. 
April 2013 Technical Report to the LHNCBC Board of Scientific Counselors
Sheets L, Gavino A, Callaghan F, Fontelo P. Do language fluency and other socioeconomic factors influence the use of PubMed and MedlinePlus?. 
Appl Clin Inform. 2013 Apr 10;4(2):170-84. doi: 10.4338/ACI-2013-01-RA-0006. Print 2013.
Schauder DM, Kuybeda O, Zhang J, Klymko K, Bartesaghi A, Borgnia MJ, Mayer ML, Subramaniam S. Glutamate receptor desensitization is mediated by changes in quaternary structure of the ligand binding domain. 
Proc Natl Acad Sci U S A. 2013 Apr 9;110(15):5921-6. doi: 10.1073/pnas.1217549110. Epub 2013 Mar 25.
McDonald CJ, Vreeman DJ, Abhyankar S. Comment on "time to integrate clinical and research informatics" [Letter]. 
Sci Transl Med. 2013 Apr 3;5(179):179le1. doi: 10.1126/scitranslmed.3005700.
Liu J, Subramanian KR, Yoo TS. An optical flow approach to tracking colonoscopy video. 
Comput Med Imaging Graph. 2013 Apr;37(3):207-23. doi: 10.1016/j.compmedimag.2013.01.010. Epub 2013 Mar 13.
Jaeger S, Karargyris A, Candemir S, Siegelman J, Folio L, Antani S, Thoma G. Automatic screening for tuberculosis in chest radiographs: a survey. 
Quant Imaging Med Surg. 2013 Apr;3(2):89-99. doi: 10.3978/j.issn.2223-4292.2013.04.03.
Marcelo A, Gavino A, Isip-Tan IT, Apostol-Nicodemus L, Mesa-Gaerlan FJ, Firaza PN, Faustorilla JF Jr., Callaghan FM, Fontelo P. A comparison of the accuracy of clinical decisions based on full-text articles and on journal abstracts alone: a study among residents in a tertiary care hospital. 
Evid Based Med. 2013 Apr;18(2):48-53. doi: 10.1136/eb-2012-100537. Epub 2012 Jul 10.
Jessup CM, Balbus JM, Christian C, Haque E, Howe SE, Newton SA, Reid BC, Roberts L, Wilhelm E, Rosenthal JP. Climate change, human health, and biomedical research: analysis of the National Institutes of Health research portfolio. 
Environ Health Perspect. 2013 Apr;121(4):399-404. doi: 10.1289/ehp.1104518. Epub 2013 Jan 18.
Cameron D, Bodenreider O, Yalamanchili H, Danh T, Vallabhaneni S, Thirunarayan K, Sheth AP, Rindflesch TC. A graph-based recovery and decomposition of Swanson's hypothesis using semantic predications. 
J Biomed Inform. 2013 Apr;46(2):238-51. doi: 10.1016/j.jbi.2012.09.004. Epub 2012 Sep 28.
Bryant B, Sari-Sarraf H, Wachtel M, Long LR, Antani SK. Fast GPU-based segmentation of H&E stained squamous epithelium from multi-gigapixel tiled virtual slides [Poster]. 
Proc. SPIE 8676, Medical Imaging 2013: Digital Pathology, 86760X (March 29, 2013); doi:10.1117/12.2007800
Harris AK, Meyerson JR, Matsuoka Y, Kuybeda O, Moran A, Bliss D, Das SR, Yewdell JW, Sapiro G, Subbarao K, Subramaniam S. Structure and accessibility of HA trimers on intact 2009 H1N1 pandemic influenza virus to stem region-specific neutralizing antibodies. 
Proc Natl Acad Sci U S A. 2013 Mar 19;110(12):4592-7. doi: 10.1073/pnas.1214913110. Epub 2013 Mar 4.
Huser V, Cimino J. Providing pharmacogenomics clinical decision support using whole genome sequencing data as input. 
AMIA Jt Summits Transl Sci Proc. 2013 Mar 18;2013:81. eCollection 2013.
Manning JD, Marciano BE, Cimino J. Visualizing the data - using lifelines2 to gain insights from data drawn from a clinical data repository. 
AMIA Jt Summits Transl Sci Proc. 2013 Mar 18;2013:168-72. eCollection 2013.
Hruby GW, Boland MR, Cimino J, Gao J, Wilcox AB, Hirschberg J, Weng C. Characterization of the biomedical query mediation process. 
AMIA Jt Summits Transl Sci Proc. 2013 Mar 18;2013:89-93. eCollection 2013.
Cimino JJ. Improving the electronic health record--are clinicians getting what they wished for?. 
JAMA. 2013 Mar 13;309(10):991-2. doi: 10.1001/jama.2013.890.
Apostolova E, You D, Xue Z, Antani SK, Demner-Fushman D, Thoma GR. Image Retrieval From Scientific Publications: Text and Image Content Processing To Separate Multipanel Figures. 
JASIST (Journal of the American Society for Information Science and Technology), 64(5):893–908, 2013.
Hristovski D, Rindflesch TC, Peterlin B. Using literature-based discovery to identify novel therapeutic approaches. 
Cardiovasc Hematol Agents Med Chem. 2013 Mar;11(1):14-24.
You D, Rahman MM, Antani SK, Demner-Fushman D, Thoma GR. Text- and content-based biomedical image modality classification. 
Proc. SPIE Medical Imaging. Orlando, FL. February 2013;8674-21.
Zhang X, Zou J, Le DX, Thoma GR. Combining Discriminative SVM models for the Improved Recognition of Investigator Names in Medical Articles. . 
Proceedings of SPIE Volume 8658, Document Recognition and Retrieval XX, IS&T/SPIE Electronic Imaging 2013.
Zarin DA, Tse T. Unambiguous identification of obesity trials [Letter]. 
N Engl J Med. 2013 Feb 7;368(6):580-1. doi: 10.1056/NEJMc1215018.
Tran EEH, Kuybeda O, Bartesaghi A, Milne JLS, Subramaniam S. Binding of Neutralizing Antibodies Results in Distinct Quaternary Conformations of Trimeric HIV-1 Envelope Glycoproteins. 
Biophysical Society 57th Annual Meeting; 2013 Feb 2-6; Philadelphia.
You D, Simpson M, Antani SK, Demner-Fushman D, Thoma GR. A robust pointer segmentation in biomedical images toward building a visual ontology for biomedical article retrieval. 
Proc. SPIE 8658, Document Recognition and Retrieval XX, 86580Q (February 4, 2013); doi:10.1117/12.2005934.
You D, Simpson M, Antani SK, Demner-Fushman D, Thoma GR. Annotating image ROIs with text descriptions for multimodal biomedical document retrieval. 
Proc. SPIE 8658, Document Recognition and Retrieval XX, 86580Q (February 4, 2013); doi:10.1117/12.2005934; http://dx.doi.org/10.1117/12.2005934.
Kuybeda O, Frank GA, Bartesaghi A, Borgnia M, Subramaniam S, Sapiro G. A collaborative framework for 3D alignment and classification of heterogeneous subvolumes in cryo-electron tomography. 
J Struct Biol. 2013 Feb;181(2):116-27. doi: 10.1016/j.jsb.2012.10.010. Epub 2012 Oct 27.
Harris AK, Meyerson JR, Matsuoka Y, Kuybeda O, Moran A, Bliss D, Das SR, Yewdell J, Sapiro G, Subbarao K, Subramaniam S. Molecular Structures of Native HA Trimers on 2009 H1N1 Pandemic Influenza Virus Complexed with Neutralizing Antibodies. 
Biophysical Journal. 2013 Jan 29;104(2 Supp 1):414a. 57th Annual Meeting of the Biophysical Society; 2013 Feb 2-6; Philadelphia. DOI: http://dx.doi.org/10.1016/j.bpj.2012.11.2310.
Meyerson JR, Tran EE, Kuybeda O, Chen W, Dimitrov DS, Gorlani A, Verrips T, Lifson JD, Subramaniam S. Molecular structures of trimeric HIV-1 Env in complex with small antibody derivatives. 
Proc Natl Acad Sci U S A. 2013 Jan 8;110(2):513-8. doi: 10.1073/pnas.1214810110. Epub 2012 Dec 24.
Cimino JJ, Ayres EJ, Beri A, Freedman R, Oberholtzer E, Rath S. Developing a self-service query interface for re-using de-identified electronic health record data. 
Stud Health Technol Inform. 2013;192:632-6.
Zhang M, Del Fiol G, Grout RW, Jonnalagadda S, Medlin R, Mishra R, Weir C, Liu H, Mostafa J, Fiszman M. Automatic identification of comparative effectiveness research from medline citations to support clinicians' treatment information needs. 
Stud Health Technol Inform. 2013;192:846-50.
Locatis CN, Ackerman MJ. Three principles for determining the relevancy of store-and-forward and live interactive telemedicine: reinterpreting two telemedicine research reviews and other research. 
Telemed J E Health. 2013 Jan;19(1):19-23. doi: 10.1089/tmj.2012.0063. Epub 2012 Nov 27.
Balkanyi L, Schulz S, Cornet R, Bodenreider O. Medical concept representation: the years beyond 2000 [Poster]. 
Stud Health Technol Inform. 2013;192:1011.
Mork JG, Jimeno Yepes A, Aronson A. The NLM Medical Text Indexer System for Indexing Biomedical Literature. . 
BioASQ 2013.
Jaeger S. The neurological principle: how traditional Chinese medicine unifies body and mind. 
Int. J. Functional Informatics and Personalised Medicine, Vol. 4, No. 2, 2013.
Maver A, Hristovski D, Rindflesch TC, Peterlin B. Integration of data from omic studies with the literature-based discovery towards identification of novel treatments for neovascularization in diabetic retinopathy. 
Biomed Res Int. 2013;2013:848952. doi: 10.1155/2013/848952. Epub 2013 Nov 24.
Jimeno Yepes AJ, Mork JG, Aronson A. Identifying PublicationTypes Using Machine Learning. 
BioASQ Workshop 2013.
Demner-Fushman D, Seckman C, Fisher C, Thoma GR. Continual development of a personalized decision support system. 
Stud Health Technol Inform. 2013;192:175-9.
Montufar-Rueda C, Rodriguez L, Jarquin JD, Barboza A, Bustillo MC, Marin F, Ortiz G, Estrada F. Severe postpartum hemorrhage from uterine atony: a multicentric study. 
J Pregnancy. 2013;2013:525914. doi: 10.1155/2013/525914. Epub 2013 Dec 2.
Del Fiol G, Curtis C, Cimino J, Iskander A, Kalluri AS, Jing X, Hulse NC, Long J, Overby CL, Schardt C, Douglas DM. Disseminating context-specific access to online knowledge resources within electronic health record systems. 
Stud Health Technol Inform. 2013;192:672-6.
Zhang, H, Fiszman M, Shin D, Wilkowski B, Rindflesch TC. Clustering cliques for graph-based summarization of the biomedical research literature. . 
BMC Bioinformatics 14:182.
Rance B, Snyder M, Lewis J, Bodenreider O. Leveraging terminological resources for mapping between rare disease information sources. 
Stud Health Technol Inform. 2013;192:529-33.
Peters L, Mortensen J, Nguyen T, Bodenreider O. Enabling complex queries to drug information sources through functional composition. 
Stud Health Technol Inform. 2013;192:692-6.
Winnenburg R, Bodenreider O. Exploring pharmacoepidemiologic groupings of drugs from a clinical perspective. 
Stud Health Technol Inform. 2013;192:827-31.
Hunt S, Cimino J, Koziol DE. A comparison of clinicians' access to online knowledge resources using two types of information retrieval applications in an academic hospital setting. 
J Med Libr Assoc. 2013 Jan;101(1):26-31. doi: 10.3163/1536-5050.101.1.005.
Ackerman MJ. Computer briefs: privacy, M-health, and social media. 
J Med Pract Manage. 2013 Jan-Feb;28(4):264-5.
Bodenreider O, Nguyen D, Chiang P, Chuang P, Madden M, Winnenburg R, McClure R, Emrick S, D'Souza I. The NLM value set authority center (Poster). 
Stud Health Technol Inform. 2013;192:1224.
Antani SK, You D, Simpson M, Rahman M, Demner-Fushman D, Thoma GR. The role of image modality and visual characteristics in archiving biomedical images. 
Proc of IS&T Archiving Conference. Volume 2013, Number 1, 2013, pp. 31-35.
Sarmiento RF, Liu F, Fontelo P. A Cross-Language Mobile Resource for Accessing MEDLINE/PubMed Based on an Open-Source, Crowdsourced Controlled Medical Vocabulary for the Philippines. 
Journal of Mobile Technology in Medicine. 2012 Dec;1:4S:28. DOI: 10.7309/jmtm.50.
Pearson G, Gill MJ. An Evaluation of Motion JPEG 2000 for Video Archiving. 
Proc. Archiving 2005. Washington, D.C. April 2005:237-43.
Abhyankar S, Leishear K, Callaghan FM, Demner-Fushman D, McDonald CJ. Lower short- and long-term mortality associated with overweight and obesity in a large cohort study of adult intensive care unit patients. 
Crit Care. 2012 Dec 18;16(6):R235. doi: 10.1186/cc11903.
Locatis CN, Conde JG, Bhagwat MA. A Hands-on Distance Learning Strategy to Increase Access to Bioinformatics Training [Poster]. 
Research Centers in Minority Institutions (RCMI): 13th RCMI International Symposium on Health Disparities; 2012 Dec 9-13; San Juan, Puerto Rico.
Gallagher ME, Moffatt C. The Profiles in Science Digital Library: Behind the Scenes. 
Proc ACM/IEEE Joint Conf Digit Libr. 2012: 433–434. doi: 10.1145/2232817.2232928.
Kilicoglu H, Shin D, Fiszman M, Rosemblat G, Rindflesch TC. SemMedDB: a PubMed-scale repository of biomedical semantic predications. 
Bioinformatics. 2012 Dec 1;28(23):3158-60. doi: 10.1093/bioinformatics/bts591. Epub 2012 Oct 8.
Pearson G, Gill MJ, Antani SK, Neve L, Miernicki G, Phichaphop K, Kanduru A, Jaeger S, Thoma GR. The Role of Location For Family Reunification During Disasters. 
HealthGIS 2012. Redondo Beach, CA. November 2012.
Morrison SM, Cheh M, Calvo SC, Collins H, Fun J, Greenberg K, Forman-Neall L. Genetics Home Reference, Ten Years In: Where We Are Now [Poster]. 
American Society of Human Genetics, November 9, 2012, San Francisco, CA.
Fontelo P, Liu F. An Analysis of "PubMed for Handhelds" Server Utilization [Poster]. 
AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2012 Nov 3-7; Chicago. p. 1736.
Liu F, Fontelo P, Gavino A. ClinicalTrials and DailyMed Links from Translational Science Search [Poster]. 
AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2012 Nov 3-7; Chicago. p. 1841.
Gavino A, Marcelo A, Isip-Tan IT, Apostol-Nicodemus L, Mesa-Gaerlan FJ, Firaza PN, Faustorilla JF Jr., Fontelo P. Email2MEDLINE Use by Rural Health Physicians in Remote Areas of the Philippines [Poster]. 
AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2012 Nov 3-7; Chicago. p. 1746.
Sheets L, Gavino A, Liu F, Fontelo P. Usability of Selected Databases for Low-Resource Clinical Decision Support [Poster]. 
AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2012 Nov 3-7; Chicago. p. 1939.
Marcelo A, Isip-Tan IT, Apostol-Nicodemus L, Mesa-Gaerlan FJ, Firaza PN, Faustorilla JF Jr., Gavino A, Fontelo P. Use of Tablet Computers at the Point-of-Care: A Case Study from the Philippines [Poster]. 
AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2012 Nov 3-7; Chicago. p. 1853.
Candemir S, Jaeger S, Palaniappan K, Antani SK, Thoma GR. Graph Cut Based Automatic Lung Boundary Detection in Chest Radiographs. 
1st Annual IEEE Healthcare Innovation Conference of the IEEE EMBS Houston, Texas USA, 7 - 9 November, 2012.
Lu C, Browne AC. Development of Sub-Term Mapping Tools (STMT) . 
AMIA 2012 Annual Symposium, Chicago, IL, November 3-7, 2012
Kawamoto K, Jacobs J, Welch BM, Huser V, Paterno MD, Del Fiol G, Shields D, Strasberg HR, Huag PJ, Liu Z, Jenders RA, Rowed DW, Chertcoff D, Fehre K, Adlassnig KP, Curtis C. Clinical information system services and capabilities desired for scalable, standards-based, service-oriented decision support: consensus assessment of the Health Level 7 clinical decision support Work Group. 
AMIA Annu Symp Proc. 2012;2012:446-55. Epub 2012 Nov 3.
Huser V, Cimino JJ. Precision and negative predictive value of links between ClinicalTrials.gov and PubMed. 
AMIA Annu Symp Proc. 2012;2012:400-8. Epub 2012 Nov 3.
Lu C, Browne AC. Development of sub-term mapping tools (STMT) [Poster]. 
AMIA 2012 Annual Symposium, Chicago, IL, November 3-7, 2012, p. 1845 (AMIA, 2012 Distinguished Poster Award) Poster.
Fung KW, Bodenreider O. Knowledge representation and ontologies. 
Richesson RL, Andrews JE (Eds.). Clinical Research Informatics, Health Informatics, DOI 10.1007/978-1-84882-448-5_14, Springer-Verlag London Limited Publishing 2012.
Peters L, Nguyen T, Bodenreider O. RxBatch – Batch operations for RxNorm and NDF-RT APIs (Poster). 
AMIA Annu Symp Proc, 2012: p. 1897.
Yoo TS, Bliss D, Lowekamp B, Chen D, Murphy GE, Narayan K, Hartnell LM, Do T, Subramaniam S. Visualizing cells and humans in 3D: Biomedical image analysis at nanometer and meter scales. 
IEEE Computer Graphics and Applications. 2012 Sep-Oct;32(5):39-49. DOI: 10.1109/MCG.2012.68.
Bodenreider O. API: Prescribable. 
Abhyankar S, Demner-Fushman D, Callaghan F, Leishear K, McDonald CJ. MIMIC-II: a database of 30,000+ patients for ICU research. 
NIH Intramural Research Festival, Bethesda MD, October 9-12, 2012.
Jaeger S, Karargyris A, Antani SK, Thoma GR. Automatic Screening For Lung Diseases In Chest Radiographs: a Global Health Initiative [Poster].. 
NIH Research Festival. October 2012.
Callaghan F, Jackson MT, Demner-Fushman D, Abhyankar S, McDonald C. Analysis of data that has been extracted from free-text using natural language processing: a likelihood model for misclassification with an application to medical informatics. . 
International Conference on Advances in Interdisciplinary Statistics and Combinatorics (AISC2012), Greensboro, NC, October 2012
Caban JJ, Rosebrock A, Yoo TS. Automatic identification of prescription drugs using shape distribution models. 
In: 19th IEEE International Conference on Image Processing (ICIP); 2012 Sep 30-Oct 3; Lake Buena Vista, Florida. p. 1005-8. DOI: 10.1109/ICIP.2012.6467032
Rance B, Doughty E, Demner-Fushman D, Kann MG, Bodenreider O. A mutation-centric approach to identifying pharmacogenomic relations in text. 
J Biomed Inform. 2012 Oct;45(5):835-41. doi: 10.1016/j.jbi.2012.05.003. Epub 2012 Jun 7.
Jaeger S. An information-theoretic neural model based on concepts in Chinese medicine. 
2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW).
Rahman MM, You D, Simpson M. An interactive image retrieval framework for biomedical articles based on visual region-of-interest (ROI) identification and classification [Abstract]. 
The 2nd IEEE Conference on Healthcare Informatics, Imaging, and Systems Biology Analyzing Big Data for Healthcare and Biomedical Sciences (HISB 2012). La Jolla, CA. September 2012.
Simpson M, You D, Rahman MM, Demner-Fushman D, Antani SK, Thoma GR. ITI's participation in the ImageCLEF 2012 medical retrieval and classification tasks. 
CLEF 2012 Working Notes. Rome, Italy. September 2012.
Sheets L, Callaghan F, Gavino A, Liu F, Fontelo P. Usability of selected databases for low-resource clinical decision support. 
Applied Clinical Informatics. 2012;3(3):326-33. DOI: http://dx.doi.org/10.4338/ACI-2012-06-RA-0024.
Rindflesch TC, Fiszman M, Kilicoglu H, Rosemblat G, Shin D, Cairelli M, Chen G, Miller CM, Workman E. Semantic Knowledge Representation Project: Advanced Information Management for Biomedical Research. 
September 2012 Technical Report to the LHNCBC Board of Scientific Counselors.
Callaghan F, Jackson MT, Demner-Fushman D, Abhyankar S, McDonald CJ. NLP-derived information improves the estimates of risk of disease compared to estimates based on manually extracted data alone. 
5th International Symposium on Semantic Mining in Biomedicine (SMBM 2012), 2012 Sept 3-4, Zurich, Switzerland.
Ackerman MJ. Computer briefs: big data. 
J Med Pract Manage. 2012 Sep-Oct;28(2):153-4.
He L, Long LR, Antani SK, Thoma GR. Histology image analysis for carcinoma detection and grading. 
Comput Methods Programs Biomed. 2012 Sep;107(3):538-56. doi: 10.1016/j.cmpb.2011.12.007. Epub 2012 Mar 20.
Jaeger S, Karargyris A, Antani SK, Thoma GR. Detecting tuberculosis in radiographs using combined lung masks. 
34th Int. Conf. of the IEEE Engineering in Medicine & Biology Society (EMBC). San Diego, CA. August 2012:4978-4981. doi: 10.1109/EMBC.2012.6347110.
Huston M, Williams RJ, Bergeris A, Fun J, Tse T. New style and new content for ClinicalTrials.gov. 
NLM Tech Bull. 2012 Jul-Aug;(387):e5.
Abhyankar S, Demner-Fushman D, McDonald CJ. Standardizing clinical laboratory data for secondary use. 
J Biomed Inform. 2012 Aug;45(4):642-50. doi: 10.1016/j.jbi.2012.04.012. Epub 2012 May 3.
Vreeman D, Chiaravalloti MT, Hook J, McDonald CJ. Enabling international adoption of LOINC through translation. 
J Biomed Inform. 2012 Aug;45(4):667-73. doi: 10.1016/j.jbi.2012.01.005. Epub 2012 Jan 21.
Lin MC, Vreeman DJ, McDonald CJ, Huff SM. Auditing consistency and usefulness of LOINC use among three large institutions - using version spaces for grouping LOINC codes. 
J Biomed Inform. 2012 Aug;45(4):658-66. doi: 10.1016/j.jbi.2012.01.008. Epub 2012 Jan 28.
Kim I, Le DX, Thoma GR. Identifying “comment-on” citation data in online biomedical articles using SVM-based text summarization technique. 
Proc. Int’l Conf. Artificial Intelligence (ICAI’12), vol. 1, pp. 431-437, Las Vegas, July 2012.
Tse T, Zarin D, Williams R, Ide N. The role and importance of clinical trial registries and results databases. 
In: Gallin JI, Ognibene FP, eds, Principles and Practice of Clinical Research. 3rd ed. Amsterdam: Academic Press; 2012: 171-81.
Ackerman MJ. Computer briefs: M-health revisited. 
J Med Pract Manage. 2012 Jul-Aug;28(1):72-3.
Bekhuis T, Demner-Fushman D. Screening nonrandomized studies for medical systematic reviews: a comparative study of classifiers. 
Artif Intell Med. 2012 Jul;55(3):197-207. doi: 10.1016/j.artmed.2012.05.002. Epub 2012 Jun 5.
Lu C, McCreedy L, Tormey D, Browne AC. A Systematic Approach for Automatically Generating Derivational Variants in Lexical Tools Based on theSPECIALIST Lexicon . 
IEEE IT Professional Magazine, May/June, 2012;36-42.
Jimeno-Yepes A, Mork J, Demner-Fushman D, Aronson AR. A one-size-fits-all indexing method does not exist: automatic selection based on meta-learning. 
JCSE, vol. 6, no. 2, pp.151-160, 2012.
Demner-Fushman D, Abhyankar S. Syntactic-semantic frames for clinical cohort identification queries. . 
Data Integration in the Life Sciences (DILS) June 2012, LNBI 7348 proceedings. Lecture Notes in Computer Science. 2012;7348:100-112
Demner-Fushman D, Antani SK, Simpson M, Thoma GR. Design and Development of a Multimodal Biomedical Information Retrieval System. 
JCSE. June 2012;6(2):168-177.
Misra D, Hall RH, Payne SM, Thoma GR. Digital preservation and knowledge discovery based on documents from an international health science program. 
Proc. 12th ACM/IEEE-CS JCDL, pg 23-26 (2012). doi: 10.1145/2232817.2232823.
McDonald CJ, Tierney WM. The effect of electronic health records on test ordering [Letter}. 
Health Aff (Millwood). 2012 Jun;31(6):1365; author reply 1366. doi: 10.1377/hlthaff.2012.0471.
Bodenreider O. Web Interface: RxMix. 
Workman TE, Fiszman M, Hurdle JF. Text summarization as a decision support aid. 
BMC Med Inform Decis Mak. 2012 May 23;12:41. doi: 10.1186/1472-6947-12-41.
Califf RM, Zarin DA, Kramer JM, Sherman RE, Aberle LH, Tasneem A. Characteristics of clinical trials registered in ClinicalTrials.gov, 2007-2010. 
JAMA. 2012 May 2;307(17):1838-47. doi: 10.1001/jama.2012.3424.
Pan H, Tryka KA, Vreeman DJ, Huggins W, Phillips MJ, Mehta JP, Phillips JH, McDonald C, Junkins HA, Ramos EM, Hamilton CM. Using PhenX measures to identify opportunities for cross-study analysis. 
Hum Mutat. 2012 May;33(5):849-57. doi: 10.1002/humu.22074. Epub 2012 Apr 3.
Thoma G, Antani SK, Gill MJ, Pearson G, Neve L. People Locator: A System for Family Reunification. 
IT Professional Volume 14 Issue 3, May 2012 Pages 13-21 DOI: 10.1109/MITP.2012.25
Lu C, Tormey D, McCreedy L, Browne AC. A Systematic Approach for Automatically Generating Derivational Variants in Lexical Tools Based on the SPECIALIST Lexicon. 
IEEE IT Professional Magazine, May/June, 2012, p. 36-42.
Aronson AR, Mork J, Lang FM, Rogers W, Jimeno-Yepes A, Sticco JC. The NLM Indexing Initiative: Current Status and Role in Improving Access to Biomedical Information. 
April 2012 Technical Report to the LHNCBC Board of Scientific Counselors.
Workman TE, Stoddart JM. Rethinking information delivery: using a natural language processing application for point-of-care data discovery. 
J Med Libr Assoc. 2012 Apr;100(2):113-20. doi: 10.3163/1536-5050.100.2.009.
Zarin D. Factual Errors about ClinicalTrials.gov and other federal mandates in special report by Shuster [Letter]. 
Clin Transl Sci. 2012 Apr;5(2):217; author reply 217. doi: 10.1111/j.1752-8062.2012.00410.x.
Demner-Fushman D, Abhyankar S. Syntactic-semantic question frames for cohort identification. 
The 2012 Joint Summits on Translational Science. San Francisco, CA. March 2012.
Ackerman MJ. Computer briefs: the healthcare cloud. 
J Med Pract Manage. 2012 Mar-Apr;27(5):320-1.
Liu J, Subramanian K, Yoo TS. A Phantom Design for Validating Colonoscopy Tracking. 
Proc. SPIE 8315, Medical Imaging 2012: Computer-Aided Diagnosis, 83151N (23 February 2012); doi: 10.1117/12.912395; http://dx.doi.org/10.1117/12.912395
McDonald CJ, McDonald MH. Electronic medical records and preserving primary care physicians' time: comment on "electronic health record-based messages to primary care providers" [Letter]. 
Arch Intern Med. 2012 Feb 13;172(3):285-7. doi: 10.1001/archinternmed.2011.1678.
Jing X, Kay S, Marley T, Hardiker NR, Cimino JJ. Incorporating personalized gene sequence variants, molecular genetics knowledge, and health knowledge into an EHR prototype based on the Continuity of Care Record standard. 
J Biomed Inform. 2012 Feb;45(1):82-92. doi: 10.1016/j.jbi.2011.09.001. Epub 2011 Sep 17.
Miller CM, Rindflesch TC, Fiszman M, Hristovski D, Shin D, Rosemblat G, Zhang H, Strohl KP. A closed literature-based discovery technique finds a mechanistic link between hypogonadism and diminished sleep quality in aging men. 
Sleep. 2012 Feb 1;35(2):279-85. doi: 10.5665/sleep.1640.
Wang, Halper M, Wei D, Gu H, Perl Y, Xu J, Elhanan G, Chen Y, Spackman KA, Case JT, Hripcsak G. Auditing complex concepts of SNOMED using a refined hierarchical abstraction network. 
J Biomed Inform. 2012 Feb;45(1):1-14. doi: 10.1016/j.jbi.2011.08.016. Epub 2011 Sep 1.
Mougin F, Burgun A, Bodenreider O. Comparing Drug-class Membership in ATC and NDF-RT. 
Proc IHI 2012 2012:437-443
Jimeno-Yepes A, Wilkowski B, Mork JG, Demner-Fushman D, Aronson AR. MeSH indexing: machine learning and lessons learned. 
ACM SIGHIT International Health Informatics Symposium, Miami, FL, USA, 2012.
Kim J, Le DX, Thoma GR. Combining SVM Classifiers to Identify Investigator Name Zones in Biomedical Articles. . 
IS&T/SPIE’s 22nd Annual Symposium on Electronic Imaging. San Francisco, CA, January 2012; 8297.
Jimeno-Yepes A, Mork JG, Wilkowski B, Demner-Fushman D, Aronson AR. MEDLINE MeSH indexing: lessons learned from machine learning and future directions. 
Proc IHI 2012, 737-742.
Jimeno-Yepes A, Aronson AR. Knowledge-based and knowledge-lean methods combined in unsupervised word sense disambiguation. . 
Proc 2nd ACM SIGHIT International Health Informatics (IHI) Symposium 2012, 733-736.
Ross JS, Tse T, Zarin DA, Xu H, Zhou L, Krumholz HM. Publication of NIH funded trials registered in ClinicalTrials.gov: cross sectional analysis. 
BMJ. 2012 Jan 3;344:d7292. doi: 10.1136/bmj.d7292.
Del Fiol G, Huser V, Strasberg HR, Maviglia SM, Curtis C, Cimino JJ. Implementations of the HL7 Context-Aware Knowledge Retrieval ("Infobutton") Standard: challenges, strengths, limitations, and uptake. 
J Biomed Inform. 2012 Aug;45(4):726-35. doi: 10.1016/j.jbi.2011.12.006.. Epub 2012 Jan 2.
Fung KW, Xu J. Synergism between the mapping projects from SNOMED CT to ICD-10 and ICD-10-CM. 
AMIA Annu Symp Proc. 2012;2012:218-27. Epub 2012 Nov 3.
Xu J, Fung KW. Handling age specification in the SNOMED CT to ICD-10-CM cross-map. 
AMIA Annu Symp Proc. 2012;2012:1014-22. Epub 2012 Nov 3.
Simpson MS, You D, Rahman MM, Antani SK, Thoma GR, Demner-Fushman D. Towards the creation of a visual ontology of biomedical imaging entities. 
AMIA Annu Symp Proc. 2012;2012:866-75. Epub 2012 Nov 3.
Armstrong K, Liu F, Seymour A, Mazhani L, Littman-Quinn R, Fontelo P, Kovarik C. Evaluation of txt2MEDLINE and development of short messaging service-optimized, clinical practice guidelines in Botswana. 
Telemed J E Health. 2012 Jan-Feb;18(1):14-7. doi: 10.1089/tmj.2011.0014. Epub 2011 Dec 7.
Jaeger S. A geomedical approach to Chinese medicine: The origin of the yin-yang symbol. 
Recent Advances in Theories and Practice of Chinese Medicine, Haixue Kuang (Ed.), ISBN: 978-953-307-903-5, InTech, 2012.
Xue Z, Antani SK, Long LR, Demner-Fushman D, Thoma GR. Window classification of brain CT images in biomedical articles. 
AMIA Annu Symp Proc. 2012;2012:1023-9. Epub 2012 Nov 3.
Tran EE, Borgnia MJ, Kuybeda O, Schauder DM, Bartesaghi A, Frank GA, Sapiro G, Milne JL, Subramaniam S. Structural mechanism of trimeric HIV-1 envelope glycoprotein activation. 
PLoS Pathog. 2012;8(7):e1002797. doi: 10.1371/journal.ppat.1002797. Epub 2012 Jul 12.
Borovikov E, Lingappa G. Face matching in Lost Person Finder Project. 
CEB Technical Report. January 2012.
Borovikov E, Zavorin I. A multi-stage document processing approach To Arabic text recognition. 
Guide to OCR for Arabic Scripts. 2012:55-78.
Fontelo P, Faustorilla J, Gavino A, Marcelo A. Digital pathology - implementation challenges in low-resource countries. 
Anal Cell Pathol (Amst). 2012;35(1):31-6. doi: 10.3233/ACP-2011-0024.
Adamusiak T, Bodenreider O. Quality assurance in LOINC using Description Logic. 
AMIA Annu Symp Proc. 2012;2012:1099-108. Epub 2012 Nov 3.
Kayaalp M. ICU Outcome Predictions using Physiologic Trends in the First Two Days. 
Computing in Cardiology (39)977–980.
Winnenburg R, Bodenreider O. Issues in creating and maintaining value sets for clinical quality measures. 
AMIA Annu Symp Proc. 2012;2012:988-96. Epub 2012 Nov 3.
Fontelo P. Consensus abstracts for evidence-based medicine. 
Evid Based Med. 2011 (Editor’s choice);16:36-38.
Cameron D, Kavuluru R, Bodenreider O, Mendes PN, Sheth AP, Thirunarayan K. Semantic predications for complex information needs in biomedical literature. 
BIBM 2011:512-519.
Goodwin RM, Abhyankar S, Zuckerman AE, Copeland SM, Sarkar D, Cuthbert C, Therrell BL, Ojodu J, Lloyd-Puryear MA, Jenders RA, McDonald CJ. Newborn screening health information exchange: updated guidance for coding and HL7 electronic messaging. 
APHL Newborn Screening and Genetics Testing Symposium. 2011 Nov 7.
Jimeno-Yepes A, Mork J, Demner-Fushman D, Aronson AR. Automatic algorithm selection for MeSH Heading indexing based on meta-learning. . 
International Symposium on Languages in Biology and Medicine, Singapore, December, 2011.
Kilicoglu H, Rosemblat G, Fiszman M, Rindflesch TC. Constructing a semantic predication gold standard from the biomedical literature. 
BMC Bioinformatics. 2011 Dec 20;12:486. doi: 10.1186/1471-2105-12-486.
Cairelli M, Rindflesch TC. Identifying Potential Biomarkers for Mild Traumatic Brain Injury by Mining Semantic Relations from MEDLINE Citations [Poster[. 
2011 Trauma Spectrum Conference, Bethesda, MD, December 9, 2011.
Murphy GE, Narayan K, Lowekamp B, Hartnell LM, Heymann JA, Fu J, Subramaniam S. Correlative 3D imaging of whole mammalian cells with light and electron microscopy. 
J Struct Biol. 2011 Dec;176(3):268-78. doi: 10.1016/j.jsb.2011.08.013. Epub 2011 Sep 1.
Locatis CN, Williamson D, Sterrett J, Detzler I, Ackerman MJ. Video medical interpretation over 3G cellular networks: a feasibility study. 
Telemed J E Health. 2011 Dec;17(10):809-13. doi: 10.1089/tmj.2011.0084. Epub 2011 Oct 19.
Meyerson JR, White TA, Bliss D, Moran A, Bartesaghi A, Borgnia MJ, de la Cruz JV, Schauder D, Hartnell LM, Nandwani R, Dawood M, Kim B, Kim JH, Sununu J, Yang L, Bhatia S, Subramaniam C, Hurt DE, Gaudreault L, Subramaniam S. Determination of molecular structures of HIV envelope glycoproteins using cryo-electron tomography and automated sub-tomogram averaging. 
J Vis Exp. 2011 Dec 1;(58). pii: 2770. doi: 10.3791/2770.
Fontelo P, Liu F. Finding translational science publications in MEDLINE/PubMed with translational science filters. 
Clin Transl Sci. 2011 Dec;4(6):455-9. doi: 10.1111/j.1752-8062.2011.00320.x. Epub 2011 Nov 7.
Lu C, Browne AC. Converting Unicode Lexicon and Lexical Tools for ASII NLP Applications . 
AMIA Annu Symp Proc 2011:1870.
Sahoo SS, Nguyen V, Bodenreider O, Parikh P, Minning T, Sheth AP. A unified framework for managing provenance information in translational research. 
BMC Bioinformatics. 2011 Nov 29;12:461. doi: 10.1186/1471-2105-12-461.
Abhyankar S, Therrell B, Eaton R, Cuthbert C, Ojodu J, Copeland S, Goodwin RM, McDonald C. Using LOINC and HL7 to standardize hemoglobinopathy screening result reporting. 
APHL Newborn Screening and Genetics Testing Symposium. 2011 Nov 7.
Bodenreider O, Peters L, Nguyen T. Browser and application programming interfaces for drug information sources. 
AMIA Annu Symp Proc, 2011: p. 2129.
Abhyankar S, Goodwin RM, Zuckerman AE, McDonald CJ. Dataset: Newborn screening LOINC panel. 
Ackerman MJ. Computer briefs: the cloud. 
J Med Pract Manage. 2011 Nov-Dec;27(3):181-2.
Peters L, Nguyen T, Bodenreider O. An application programming interface for NDF-RT. 
AMIA Annu Symp Proc 2011:1922
Demner-Fushman D, Abhyankar S, Callaghan FM, McDonald CJ. Extracting sources of admission and discharge destinations from discharge summaries [Poster]. 
AMIA 2011 Fall Symposium.
Liu F, Fontelo P. Using Social Networking Resources to Search MEDLINE/PubMed, a Practice Guidelines Database and Journal Club. 
AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2011 Oct 22-26; Washington DC. p. 1864.
Sheets L, Gavino A, Fontelo P. Language Fluency and Other Predictors of International Use of PubMed and MedlinePlus. 
AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2011 Oct 22-26; Washington DC. p. 1779.
Gavino AI, Ho BLC, Wee PAA, Marcelo AB, Fontelo P. Information-seeking practices of medical professionals and students in low and middle income countries. 
AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2011 Oct 22-26; Washington DC. p. 1780.
Cairelli M, Rindflesch TC. Hierarchical Summarization of Concepts for Visual Discovery Browsing - a Pilot Study [abstract and demo]. 
Procedings of the IEEE VisWeek Workshop on Visual Analytics in Healthcare, October 23, 2011, Providence, RI, 37-40.
Callaghan F, Demner-Fushman D, Abhyankar S, McDonald CJ. Addressing errors in a retrospective observational ICU database [poster]. 
AMIA 2011 Fall Symposium.
Abhyankar S, Goodwin RM, Zuckerman AE, McDonald CJ. Dataset: Newborn Screening LOINC Codes (AHIC panel). 
Zhang H, Fiszman M, Shin D, Miller CM, Rosemblat G, Rindflesch TC. Degree centrality for semantic abstraction summarization of therapeutic studies. 
J Biomed Inform. 2011 Oct;44(5):830-8. doi: 10.1016/j.jbi.2011.05.001. Epub 2011 May 8.
Rindflesch TC, Kilicoglu H, Fiszman M, Rosemblat G, Shin D. Semantic MEDLINE: An advanced information management application for biomedicine. 
Information Services and Use, 2011, 31(1): 15-21.
Locatis CN. High Performance Connectivity and Communications. 
Technical Report to the LHNCBC Board of Scientific Counselors; 2011 Sep. 29 pages.
You D, Antani SK, Demner-Fushman D, Govindaraju V, Thoma GR. Detecting Figure-Panel Labels In Medical Journal Articles Using MRF. 
Proceedings of 11th International Conference on Document Analysis and Recognition (ICDAR 2011). Beijing, China. September 2011:967-971.
Bodenreider O, Peters L, Nguyen T. RxNav: Browser and Application Programming Interfaces for Drug Information Sources [Abstract]. 
AMIA Annu Symp Proc 2011:2129
Rahman MM, Antani SK, Thoma GR. A Query Expansion Framework in Image Retrieval Domain Based on Local and Global Analysis. 
Inf Process Manag. 2011 Sep 1;47(5):676-691.
Plaza L, Jimeno-Yepes A, Diaz A, Aronson AR. Studying the correlation between different word sense disambiguation methods and summarization effectiveness in biomedical texts. 
BMC Bioinformatics. 2011 Aug 26;12:355. doi: 10.1186/1471-2105-12-355.
Rance B, Demner-Fushman D, Rindflesch TC, Bodenreider O. Exploring Automatic Approaches to Extracting Pharmacogenomic Information from the Biomedical Literature. 
Proceedings of the 2011 PSB Workshop on Mining the Pharmacogenomics Literature 2011
Schuette P, Callaghan F, Rochester CG. Confidence intervals for binomial proportions with applications to product safety signaling in drug exposure registries [Abstract]. 
Proc 2011 Joint Statistical Meetings. 2011 July 30.
Nguyen V, Bodenreider O, Minning T, Sheth AP. The knowledge-driven exploration of integrated biomedical knowledge sources facilitates the generation of new hypotheses. 
Proceedings of the First International Workshop on Linked Science (LISC 2011) 2011:(electronic proceedings: http://ceur-ws.org/Vol-783/)
Rahman MM, Antani SK, Thoma GR. A learning-based similarity fusion and filtering approach for biomedical image retrieval using SVM classification and relevance feedback. 
IEEE Trans Inf Technol Biomed. 2011 Jul;15(4):640-6. doi: 10.1109/TITB.2011.2151258. Epub 2011 Jun 16.
Stanley RJ, De S, Demner-Fushman D, Antani SK, Thoma GR. An image feature-based approach to automatically find images for application to clinical decision support. 
Comput Med Imaging Graph. 2011 Jul;35(5):365-72. doi: 10.1016/j.compmedimag.2010.11.008. Epub 2010 Dec 8.
Ackerman MJ, Locatis CN. Advanced networks and computing in healthcare. 
J Am Med Inform Assoc. 2011 Jul-Aug;18(4):523-8. doi: 10.1136/amiajnl-2010-000054. Epub 2011 Apr 12.
Ackerman MJ. Computer briefs: meaningful images. 
J Med Pract Manage. 2011 Jul-Aug;27(1):64-5.
Caban JJ, Rheingans P, Yoo TS. An Evaluation of Visualization Techniques to Illustrate Statistical Deformation Models. 
Computer Graphics Forum. 2011 May-Jun;30(3):821-30. doi:10.1111/j.1467-8659.2011.01931.x.
Jimeno-Yepes A, Aronson AR. Self-training and co-training in biomedical word sense disambiguation. 
BioNLP 2011 Workshop, June 2011, 182-183.
Long LR, Antani SK, Thoma GR, Deserno TM. Content-based Image Retrieval For Advancing Medical Diagnostics, Treatment, and Education. 
New Technologies for Advancing Healthcare and Clinical Practices. June 2011:1-17.
Abhyankar S, Callaghan FM, Demner-Fushman D, McDonald CJ. Using informatics tools to study obesity and outcomes after critical illness. 
NLM Informatics Training Conference 2011, National Institutes of Health (NIH) Campus, Natcher Conference Center, Bethesda, MD, June 28-30, 2011.
Jimeno-Yepes A, McInnes BT, Aronson AR. Collocation analysis for UMLS knowledge-based word sense disambiguation. 
BMC Bioinformatics. 2011 Jun 9;12 Suppl 3:S4. doi: 10.1186/1471-2105-12-S3-S4.
Zhang X, Zou J, Le DX, Thoma GR. A structural SVM approach for reference parsing. 
BMC Bioinformatics. 2011 Jun 9;12 Suppl 3:S7. doi: 10.1186/1471-2105-12-S3-S7.
Caban JJ, Yao J, Mollura DJ, Liao D, Yoo TS. Enhancing image analytic tools by fusing quantitative physiological values with image features. 
In: SIIM [Society for Imaging Informatics in Medicine] 2011 Scientific Abstract Book. SIIM Annual Meeting Learning Track 1 Scientific Sessions: Advanced Visualization: Making Advanced Visualization Tools Work for You; 2011 Jun 2-5; Washington DC/National Harbor, Maryland.
Xue Z, Long LR, Antani SK, Thoma GR. Spine x-ray image retrieval using partial vertebral boundaries. 
24th International Symposium on Computer-Based Medical Systems. Bristol, UK. June 2011.
McDonald C, Vreeman D, Goodwin RM. Dataset: LOINC Top 300+ Lab Orders. 
Jaeger S, Antani S, Thoma GR. Tuberculosis Screening of Chest Radiographs. 
2 June 2011, SPIE Newsroom. DOI: 10.1117/2.1201105.003732i.
Jimeno-Yepes A, McInnes BT, Aronson AR. Exploiting MeSH indexing in MEDLINE to generate a data set for word sense disambiguation. 
BMC Bioinformatics. 2011 Jun 2;12:223. doi: 10.1186/1471-2105-12-223.
Simpson MS, Demner-Fushman D. Biomedical Text Mining: A Survey of Recent Progress. 
In Charu C. Aggarwal and ChengXiang Zhai, Editors. Mining Text Data. (Springer) 2011.
Gururajan A, Kamalakannan S, Sari-Sharraf H, Shahriar M, Long LR, Antani SK. On the creation of a segmentation library for digitized cervical and lumbar spine radiographs. 
Comput Med Imaging Graph. 2011 Jun;35(4):251-65. doi: 10.1016/j.compmedimag.2010.11.006. Epub 2011 Mar 5.
Liu WL, Zhang K, Locatis CN, Ackerman MJ. Internet-based videoconferencing coder/decoders and tools for telemedicine. 
Telemed J E Health. 2011 Jun;17(5):358-62. doi: 10.1089/tmj.2010.0193. Epub 2011 May 12.
McDonald CJ, Abhyankar S. Clinical decision support and rich clinical repositories: a symbiotic relationship: comment on "Electronic health records and clinical decision support systems". 
Arch Intern Med. 2011 May 23;171(10):903-5. doi: 10.1001/archinternmed.2010.518. Epub 2011 Jan 24.
Luciano JS, Andersson B, Batchelor C, Bodenreider O, Clark T, Denny CK, Domarew C, Gambet T, Harland L, Jentzsch A, Kashyap V, Kos P, Kozlovsky J, Lebo T, Marshall SM, McCusker JP, McGuinness DL, Ogbuji C, Pichler E, Powers RL, Prud'hommeaux E, Samwald M, Schrimi L, Tonellato PJ, Wjetzel JZ, Stephens S, Dumontier M. The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside. 
J Biomed Semantics. 2011 May 17;2 Suppl 2:S1. doi: 10.1186/2041-1480-2-S2-S1.
Locatis CN, Williamson D, Gould-Kabler C, Zone-Smith L, Detzler I, Roberson J, Maisiak R, Ackerman MJ. In-Person, Video, and Telephonic Medical Interpretation. 
American Telemedicine Association 16th Annual International Meeting; 2011 May 1-3; Tampa, Florida.
Mitra R, Lee J, Jo J, Milani M, McClintick J, Edenberg H, Kesler K, Rieger K, Badve S, Cummings O, Mohiuddin A, Thomas DG, Luo X, Juliar BE, Li L, Mesaros C, Blair IA, Srirangam A, Kratzke R, McDonald CJ, Kim J, Potter DA. Prediction of postoperative recurrence-free survival in non-small cell lung cancer by using an internationally validated gene expression model. 
Clin Cancer Res. 2011 May 1;17(9):2934-46. doi: 10.1158/1078-0432.CCR-10-1803. Epub 2011 Jan 17.
McDonald CJ, Abhyankar S. Moving, merging, managing, and mining clinical data for care and research. 
April 2011 Technical Report to the LHNCBC Board of Scientific Counselors.
Yoo TS, Hamilton T, Hurt D, Caban J, Liao D, Chen D. Toward Quantitative X-Ray CT Phantoms of Metastatic Tumors Using Rapid Prototyping Technology. 
In: Pan X, Liebling M, editors. Proceedings of ISBI 2011: IEEE Computer Society International Symposium on Biomedical Imaging: From Nano to Macro; 2011 Mar 30-Apr 2; Chicago. p. 1770-3. DOI: 10.1109/ISBI.2011.5872749.
Ripple AM, Mork JG, Humphreys BL, Knecht LS. A retrospective cohort study of structured abstracts in MEDLINE, 1992-2006. 
J Med Libr Assoc. 2011 Apr;99(2):160-3. doi: 10.3163/1536-5050.99.2.009.
Mork J, Peters L, Jimeno-Yepes A, Aronson AR, Bodenreider O. MetaMap in the CALBC Workshop II. 
CALBC Workshop II, March 2011.
Xue Z, Long LR, Antani SK, Thoma GR. Pathology-based vertebral image retrieval. 
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2011, March 30 - April 2, 2011, Chicago, Illinois, USA. pages 1893-1896, IEEE, 2011. doi: 10.1109/ISBI.2011.5872778.
Locatis CN, Berner ES, Hammack G, Smith S, Maisiak R, Ackerman MJ. Communication and proximity effects on outcomes attributable to sense of presence in distance bioinformatics education. 
BMC Med Educ. 2011 Mar 14;11:10. doi: 10.1186/1472-6920-11-10.
Gill MJ, Pearson G, Neve L, Miernicki G, Antani SK, Thoma GR. Mobile App: ReUnite iOS app. 
Zarin DA, Tse T, Williams RJ, Califf RM, Ide NC. The ClinicalTrials.gov results database--update and key issues. 
N Engl J Med. 2011 Mar 3;364(9):852-60. doi: 10.1056/NEJMsa1012065.
Butan C, Hartnell LM, Fenton AK, Bliss D, Sockett RE, Subramaniam S, Milne JL. Spiral architecture of the nucleoid in Bdellovibrio bacteriovorus. 
J Bacteriol. 2011 Mar;193(6):1341-50. doi: 10.1128/JB.01061-10. Epub 2010 Dec 10.
Ackerman MJ. Computer briefs: tagging the EMR. 
J Med Pract Manage. 2011 Mar-Apr;26(5):323-4.
Antani S, Xue Z, Long LR, Bennett D, Ward S, Thoma GR. Is there a need for biomedical CBIR systems in clinical practice? Outcomes from a usability study. 
Proceedings of SPIE Medical Imaging 2011: Advanced PACS-based Imaging Informatics and Therapeutic Applications. Orlando, FL. February 2011;7967:796708.
Caban JJ, Liao D, Yao J, Mollura DJ, Gochuico B, Yoo TS. Enhancing image classification models with multimodal biomarkers. 
In: Summers RM, van Ginneken B, editors. Proceedings of SPIE Medical Imaging 2011: Computer-Aided Diagnosis; 2011 Feb 12-17; Lake Buena Vista (Orlando area), Florida;7963:9 pages. DOI: 10.1117/12.878084.
Mann D, Caban JJ, Stolka PJ, Boctor EM, Yoo TS. Multidimensional transfer functions for effective visualization of streaming ultrasound and elasticity images. 
In: Wong KH, Holmes DR III, editors. Proceedings of SPIE Medical Imaging 2011: Visualization, Image-Guided Procedures, and Modeling; 2011 Feb 12-17; Lake Buena Vista, Florida;7964:1-8. DOI:10.1117/12.878935.
Liu J, Subramanian KR, Yoo TS. Temporal Volume Flow: An Approach to Tracking Failure Recovery. 
In: Summers RM, van Ginneken B, editors. Proceedings of SPIE Medical Imaging 2011: Computer-Aided Diagnosis; 2011 Feb 12-17; Lake Buena Vista, Florida;7963. SPIE; 2011 Mar 4. DOI: 10.1117/12.878220.
Doughty E, Kirk B, Kann MG, Bodenreider O. Integrating Drug-gene Associations Mined from the Literature with Drug Information Sources - A Comparison with PharmGKB. 
Proceedings of the 2011 PSB Workshop on Mining the Pharmacogenomics Literature 2011
He L, Long LR, Antani S, Thoma GR. Distribution Fitting-based Pixel Labeling For Histology Image Segmentation. 
Proceedings of SPIE Medical Imaging 2011. February 2011
Doughty E, Kertesz-Farkas A, Bodenreider O, Thompson G, Adadey A, Peterson T, Kann MG. Toward an automatic method for extracting cancer- and other disease-related point mutations from the biomedical literature. 
Bioinformatics. 2011 Feb 1;27(3):408-15. doi: 10.1093/bioinformatics/btq667. Epub 2010 Dec 7.
Cheng B, Antani SK, Stanley J, Demner-Fushman D, Thoma GR. Automatic segmentation of subfigure image panels for multimodal biomedical document retrieval. 
Proceeding of: Document Recognition and Retrieval XVIII - DRR 2011, 18th Document Recognition and Retrieval Conference, part of the IS&T-SPIE Electronic Imaging Symposium, San Jose, CA, USA, January 24-29, 2011, Proceedings.
Kim I, Le DX, Thoma GR. Automated identification of biomedical article type using support vector machines. 
Proc. 18th SPIE Document Recognition and Retrieval, 7874:787403 (1-9), San Francisco, January 2011.
You D, Antani SK, Demner-Fushman D, Rahman MM, Govindaraju V, Thoma GR. Automatic identification of ROI in figure images toward improving hybrid (text and image) biomedical document retrieval. 
Proceedings of SPIE Electronic Imaging Science and Technology, Document Retrieval and Recognition XVIII. San Francisco, CA. January 2011;7874:78740K.
Zarin D, Tse T. The effect of funding source on outcome reporting among drug trials [Letter]. 
Ann Intern Med. 2011 Jan 18;154(2):137-8; author reply 138. doi: 10.7326/0003-4819-154-2-201101180-00020.
Fung K, Xu J, Rosenbloom ST, Mohr D, Maram N. Testing Three Problem List Terminologies in a simulated data entry environment. 
AMIA Annu Symp Proc. 2011;2011:445-54. Epub 2011 Oct 22.
Karargyris A, Antani SK, Thoma GR. Segmenting anatomy in chest x-rays for tuberculosis screening. 
Conf Proc IEEE Eng Med Biol Soc. 2011;2011:7779-82. doi: 10.1109/IEMBS.2011.6091917.
Campbell JR, Xu J, Fung K. Can SNOMED CT fulfill the vision of a compositional terminology? Analyzing the use case for problem list. 
AMIA Annu Symp Proc. 2011;2011:181-8. Epub 2011 Oct 22.
Lin MC, Vreeman DJ, McDonald CJ, Huff SM. A characterization of local LOINC mapping for laboratory tests in three large institutions. 
Methods Inf Med. 2011;50(2):105-14. doi: 10.3414/ME09-01-0072. Epub 2010 Aug 20.
Beaudoin DE, Longo N, Logan RA, Jones JP, Mitchell JA. Using information prescriptions to refer patients with metabolic conditions to the Genetics Home Reference website. 
J Med Libr Assoc. 2011 Jan;99(1):70-6. doi: 10.3163/1536-5050.99.1.012.
Peters L, Kapusnik-Uner JE, Nguyen T, Bodenreider O. An approximate matching method for clinical drug names. 
AMIA Annu Symp Proc. 2011;2011:1117-26. Epub 2011 Oct 22.
Jing X, Cimino JJ. Graphical methods for reducing, visualizing and analyzing large data sets using hierarchical terminologies. 
AMIA Annu Symp Proc. 2011;2011:635-43. Epub 2011 Oct 22.
Wilkowski B, Fiszman M, Miller CM, Hristovski D, Arabandi S, Rosemblat G, Rindflesch TC. Graph-based methods for discovery browsing with semantic predications. 
AMIA Annu Symp Proc. 2011;2011:1514-23. Epub 2011 Oct 22.
Jimeno-Yepes A, Wilkowski B, Mork J, van Lenten E, Demner-Fushman D, Aronson AR. A bottom-up approach to MEDLINE indexing recommendations. 
AMIA Annu Symp Proc. 2011;2011:1583-92. Epub 2011 Oct 22.
Gavino AI, Tolentino PA, Bernal AB, Fontelo P, Marcelo AB. A Telemedicine Program Utilizing Short Message Service (SMS) for Remote Village Doctors. 
Mobile eHealth solutions for Developing Countries, International Telecommunication Union. 2010:94-98.
Xue Z, Long LR, Antani SK, Neve L, Zhu Y, Thoma GR. A unified set of analysis tools for uterine cervix image segmentation. 
Comput Med Imaging Graph. 2010 Dec;34(8):593-604. doi: 10.1016/j.compmedimag.2010.04.002. Epub 2010 May 26.
Lu C, Divita G, Browne AC. Development of Visual Tagging Tool . 
AMIA Annu Symp Proc 2010:1156.
Jao CS, Fung KW, Demner-Fushman D. Identifying indications for drugs in drug package inserts. 
AMIA Annual Symposium Proceedings 2010. November 2010
Jimeno-Yepes A, Aronson AR. Knowledge-based biomedical word sense disambiguation: comparison of approaches. 
BMC Bioinformatics. 2010 Nov 22;11:569. doi: 10.1186/1471-2105-11-569.
Cardenas I, Marcelo AB, Fontelo P. Development of a health informatics community-generated, open-source controlled medical vocabulary. 
AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2010 Nov 13-17; Washington DC. p. 998.
Olson R, James E, Fontelo P. Information access trends among clinicians at a community hospital in northeast Georgia. 
AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2010 Nov 13-17; Washington DC. p. 975.
Fontelo P, Liu F, Banez RJ. Mobile Devices, Smartphones and ‘PubMed for Handhelds’. 
AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2010 Nov 13-17; Washington DC. p. 1044.
Banez RJ, Fontelo P, Marcelo AB, Liu F. QRefer: Using 2D-Barcode Technology for Patient Referral Systems. 
AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2010 Nov 13-17; Washington DC. p. 975.
Kovarik C, Fontelo P, Liu F, Armstrong K, Littman-Quinn R, Banez R, Seymour A, Shih T, Mazhani L. txt2MEDLINE and SMS Practice Guidelines for Clinicians in Botswana. 
AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2010 Nov 13-17; Washington DC. p. 1043.
Liu F, Fontelo P. Automatic translations of MEDLINE abstracts using Google Translate. 
AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2010 Nov 13-17; Washington DC. p. 1148.
Abhyankar S, Lloyd-Puryear MA, Goodwin R, Copeland S, Eichwald J, Therrell BL, Zuckerman A, Downing G, McDonald CJ. Standardizing newborn screening results for health information exchange. 
AMIA Annu Symp Proc. 2010 Nov 13;2010:1-5.
Bodenreider O, Demner-Fushman D. Investigating drug classes in biomedical terminologies from the perspective of clinical decision support. 
AMIA Annu Symp Proc. 2010 Nov 13;2010:56-60.
Vreeman DJ, McDonald CJ, Huff SM. Representing Patient Assessments in LOINC®. 
AMIA Annu Symp Proc. 2010 Nov 13;2010:832-6.
Lin M-C, Vreeman DJ, McDonald CJ, Huff SM. Correctness of Voluntary LOINC Mapping for Laboratory Tests in Three Large Institutions. 
AMIA Annu Symp Proc. 2010 Nov 13;2010:447-51.
Mougin F, Bodenreider O, Burgun A. Looking for Anemia (and Other Disorders) in SNOMED CT: Comparison of Three Approaches and Practical Implications. 
AMIA Annu Symp Proc. 2010 Nov 13;2010:527-31.
Peters L, Kapusnik-Uner JE, Bodenreider O. Methods for managing variation in clinical drug names. 
AMIA Annu Symp Proc. 2010 Nov 13;2010:637-41.
Simpson M, Demner-Fushman D, Thoma GR. Evaluating the Importance of Image-related Text for Ad-hoc and Case-based Biomedical Article Retrieval. 
AMIA Annu Symp Proc. 2010 Nov 13;2010:752-6.
Fiszman M, Shin D, Sneiderman CA, Jin H, Rindflesch TC. A Knowledge Intensive Approach to Mapping Clinical Narrative to LOINC. 
AMIA Annu Symp Proc. 2010 Nov 13;2010:227-31.
Zhang GQ, Bodenreider O. Large-scale, Exhaustive Lattice-based Structural Auditing of SNOMED CT. 
AMIA Annu Symp Proc. 2010 Nov 13;2010:922-6.
Xue Z, Antani SK, Long LR, Thoma GR. An online segmentation tool for cervicographic image analysis. 
ACM International Health Informatics Symposium, IHI 2010, Arlington, VA, USA, November 11 - 12, 2010, Proceedings; 01/2010.
Zhang G-Q, Bodenreider O. Using SPARQL to Test for Lattices: Application to Quality Assurance in Biomedical Ontologies. 
In: Patel-Schneider PF, Pan Y, Hitzler P, Mika P, Zhang L, Pan JZ, et al., editors. Proceedings of the 9th International Semantic Web Conference (ISWC 2010), Shanghai, China, November 7-11, 2010. Berlin, Heidelberg: Springer; 2010. p. 273-288.
Fontelo P, Liu F. Are Consensus MEDLINE Abstracts Useful For Guiding Clinical Decisions?. 
Evidence 2010 -- Transforming Healthcare; 2010 Nov 1-2; BMA House, London.
Fung K, Scichilone R, Giannangelo K. Benefits and Use Cases of a SNOMED CT to ICD-10 Map. . 
AMIA Annu Symp Proc 2010: 1049.
Mork JG, Aronson AR. The Medical Text Indexer (MTI) system for indexing biomedical literature. 
book chapter submitted to monograph Indexing Specialities: Medicine. Edited by L. Pilar Wyman. Medford, NJ: Information Today, Inc., in association with the American Society of Indexers, Phoenix, AZ. 2010.
Zhu VJ, Fung K. Extraction and Comparison of Drug Class Information From Standard Terminologies. 
AMIA Annu Symp Proc. November 2010:1327.
Fung KW, McDonald C, Srinivasan S. The UMLS-CORE project: a study of the problem list terminologies used in large healthcare institutions. 
J Am Med Inform Assoc. 2010 Nov-Dec;17(6):675-80. doi: 10.1136/jamia.2010.007047.
Pathak J, Peters L, Chute CG, Bodenreider O. Comparing and evaluating terminology services application programming interfaces: RxNav, UMLSKS and LexBIG. 
J Am Med Inform Assoc. 2010 Nov-Dec;17(6):714-9. doi: 10.1136/jamia.2009.001149.
Ackerman MJ. Computer briefs: M-health: modern and mobile. 
J Med Pract Manage. 2010 Nov-Dec;26(3):191-2.
Xue Z, Long LR, Antani SK, Thoma GR. Automatic Extraction of Mosaic Patterns In Uterine Cervix Images. 
23rd IEEE International Symposium on Computer-Based Medical Systems (CBMS) 2010. Perth, Australia. October 2010:273-8.
Willams RJ, Tse T, Harlan WR, Zarin DA. Registration of observational studies: is it time?. 
CMAJ. 2010 Oct 19;182(15):1638-42. doi: 10.1503/cmaj.092252. Epub 2010 Jul 19.
Fung KW. API: RxTerms. 
Workman TE, Fiszman M, Hurdle JF, Rindflesch TC. Biomedical text summarization to support genetic database curation: using Semantic MEDLINE to create a secondary database of genetic information. 
J Med Libr Assoc. 2010 Oct;98(4):273-81. doi: 10.3163/1536-5050.98.4.003.
Ducut E, Liu F, Avila JM, Encinas MA, Diwa M, Fontelo P. Virtual Microscopy in a Developing Country: A Collaborative Approach to Building an Image Library. 
Journal of eHealth Technology and Application. 2010 Sep;8(2):112-5.
Ceccarelli MA, Curioso WH, Liu F, Fontelo P. Do machine translations increase the usefulness of summaries of MEDLINE abstracts? A preliminary study with medical students and physicians in Peru. 
In: Stud Health Technol Inform [Studies in Health Technology and Informatics] -- MEDINFO 2010: Proceedings of the 13th World Congress on Medical and Health Informatics; 2010 Sep 12-15; Cape Town, South Africa;160:1414.
Demner-Fushman D, Antani SA, Simpson M, Rahman MM. Combining Text and Visual Features for Biomedical Information Retrieval and Ontologies. 
September 2010 Technical Report to the LHNCBC Board of Scientific Counselors.
Mork JG, Bodenreider O, Demner-Fushman D, Dogan RI, Lang FM, Lu Z, Névéol A, Peters L, Shooshan SE, Aronson AR. Extracting Rx information from clinical narrative. 
J Am Med Inform Assoc. 2010 Sep-Oct;17(5):536-9. doi: 10.1136/jamia.2010.003970.
Rahman MM, Antani SK, Thoma GR. Biomedical Image Retrieval In a Fuzzy Feature Space With Affine Region Detection and Vector Quantization of a Scale-Invariant Descriptor. 
6th International Symposium on Visual Computing (ISVC) 2010. Las Vegas, NV. November 2010.
Rahman MM, Antani SK, Thoma GR. Bag of Keypoints-Based Biomedical Image Search With Affine Covariant Region Detection and Correlation-Enhanced Similarity Matching. 
23rd IEEE International Symposium on Computer-Based Medical Systems (CBMS ) 2010. Perth, Australia. October 2010:261-6.
He L, Long LR, Antani SK, Thoma GR. Local and Global Gaussian Mixture Models For Hematoxylin and Eosin Stained Histology Image Segmentation. 
20th International Conference on Hybrid Intelligence Systems. Atlanta, GA. August 2010:223-8
Kilicoglu H, Fiszman M, Rosemblat G, Marimpietri S, Rindflesch TC. Arguments of Nominals in Semantic Interpretation of Biomedical Text. 
BioNLM Workshop Proc, Assoc. for Computational Linguistics 2010
Resnick MP, Ripple AM, Auston I, Rindflesch TC. An Ontology for Public Health to Support Enhanced Information Retrieval. 
AMIA Annu Symp Proc. 2010
Demner-Fushman D, Mork JG, Shooshan SE, Aronson AR. UMLS content views appropriate for NLP processing of the biomedical literature vs. clinical text. 
J Biomed Inform. 2010 Aug;43(4):587-94. doi: 10.1016/j.jbi.2010.02.005. Epub 2010 Feb 10.
Murphy GE, Lowekamp B, Zerfas PM, Chandler RJ, Narasimha R, Venditti CP, Subramaniam S. Ion-abrasion scanning electron microscopy reveals distorted liver mitochondrial morphology in murine methylmalonic acidemia. 
J Struct Biol. 2010 Aug;171(2):125-32. doi: 10.1016/j.jsb.2010.04.005. Epub 2010 Apr 23.
Cheng B, Stanley RJ, Antani SK, Thoma GR. A Novel Computational Intelligence-based Approach For Medical Image Artifacts Detection. 
Proceedings of the 2010 International Conference on Artificial Intelligence and Pattern Recognition. Orlando, FL. July 2010:113-20
Felts RL, Narayan K, Estes JD, Shi D, Trubey CM, Fu J, Hartnell LM, Ruthel GT, Schneider DK, Nagashima K, Bess JW Jr, Bavari S, Lowekamp B, Bliss D, Lifson JD, Subramaniam S. 3D visualization of HIV transfer at the virological synapse between dendritic cells and T cells. 
Proc Natl Acad Sci U S A. 2010 Jul 27;107(30):13336-41. doi: 10.1073/pnas.1003040107. Epub 2010 Jul 12.
Thoma GR, Ford G, Antani SK, Demner-Fushman D, Chung M, Simpson M. Interactive Publication: The document as a research tool. 
Web Semant. 2010 Jul 1;8(2-3):145-150.
Ackerman MJ. Computer briefs: Med, Fed, and IT. 
J Med Pract Manage. 2010 Jul-Aug;26(1):61-2.
Rahman MM, Antani SK, Thoma GR. Local Concept-Based Medical Image Retrieval With Correlation-Enhanced Similarity Matching Based On Global Analysis. 
IEEE Computer Society Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA10) in conjunction with IEEE International Conference on Computer Vision and Pattern Recognition (CVPR) 2010. June 2010:87-94
Zhang X, Zou J, Le DX, Thoma GR. Investigator Name Recognition From Medical Journal Articles: A Comparative Study of SVM and Structural SVM. 
International Workshop on Document Analysis Systems. June 2010:121-8
Caban JJ, Rheingans P, Yoo TS. An MRF-based Statistical Deformation Model for Morphological Image Analysis. 
IEEE Computer Society Workshop on Mathematical Models in Biomedical Image Analysis (MMBIA); 2010 Jun 14; San Francisco:31-8.
Lowekamp B, Chen D. A Streaming IO Base Class and Support for Streaming the MRC and VTK File Format. 
Insight Journal. Web. 2010 Jun 9.
Zou J, Le DX, Thoma GR. Locating and parsing bibliographic references in HTML medical articles. 
Int J Doc Anal Recognit. 2010 Jun 1;13(2):107-119.
Kamalakannan S, Gururajan A, Sari-Sarraf H, Long LR, Antani SK. Double-edge detection of radiographic lumbar vertebrae images using pressurized open DGVF snakes. 
IEEE Trans Biomed Eng. 2010 Jun;57(6):1325-34. doi: 10.1109/TBME.2010.2040082. Epub 2010 Feb 17.
Qian X, Tagare HD, Fulbright RK, Long LR, Antani SK. Optimal embedding for shape indexing in medical image databases. 
Med Image Anal. 2010 Jun;14(3):243-54. doi: 10.1016/j.media.2010.01.001. Epub 2010 Jan 20.
Demner-Fushman D, Karpinski J, Thoma GR. Automatically building a repository to support evidence-based practice. . 
Proceedings of the 2nd Workshop on Building and evaluating resources for biomedical text mining (BioTxtM 2010), 7th Language Resources and Evaluation Conference (LREC 2010). Valetta, Malta. May 2010.
Armstrong K, Liu F, Seymour A, Rahman M, Fontelo P, Kovarik C. Design and Evaluation of txt2MEDLINE and SMS Optimized, Searchable Clinical Guidelines for Clinicians in Botswana. 
Telemedicine J E Health;16(S1):S-93. American Telemedicine Association 15th Annual International Meeting and Exposition; 2010 May 16-18; San Antonio, Texas.
Banez RJ, Sarmiento R, Marcelo A, Fontelo P, Du B. An SMS Appointment Reminder System for Prenatal Care in Urban Health Care Centers in the Philippines. 
Telemed J E Health;16(S1):S-38. American Telemedicine Association 15th Annual International Meeting and Exposition; 2010 May 16-18; San Antonio, Texas.
Friedlin J, McDonald CJ. An evaluation of medical knowledge contained in Wikipedia and its use in the LOINC database. 
J Am Med Inform Assoc. 2010 May-Jun;17(3):283-7. doi: 10.1136/jamia.2009.001180.
Chen D, Chittajallu DR, Passalis G, Kakadiaris IA. Computational tools for quantitative breast morphometry based on 3D scans. 
Ann Biomed Eng. 2010 May;38(5):1703-18. doi: 10.1007/s10439-010-9971-z. Epub 2010 Mar 19.
Aronson AR, Lang FM. An overview of MetaMap: historical perspective and recent advances. 
J Am Med Inform Assoc. 2010 May-Jun;17(3):229-36. doi: 10.1136/jamia.2009.002733.
Bodenreider O. Quality Assurance in Biomedical Terminologies and Ontologies. 
April 2010 Technical Report to the LHNCBC Board of Scientific Counselors.
Locatis C, Williamson D, Gould-Kabler C, Zone-Smith L, Detzler I, Roberson J, Maisiak R, Ackerman MJ. Comparing in-person, video, and telephonic medical interpretation. 
J Gen Intern Med. 2010 Apr;25(4):345-50. doi: 10.1007/s11606-009-1236-x. Epub 2010 Jan 27.
Guan H, Antani S, Long LR, Thoma GR. Minimizing the Semantic Gap In Biomedical Content-based Image Retrieval. 
Proc SPIE, Medical Imaging: Advanced PACS-based Imaging Informatics, and Therapeutic Applications. March 2010;7628:762807-1 ~ 762807-8
Kim E, Huang X, Tan G, Long LR, Antani S. A Hierarchical SVG Image Abstraction Layer for Medical Imaging. 
Medical Imaging 2010: Advanced PACS-based Imaging Informatics and Therapeutic Applications. San Diego, California. March 2010;7628
Xue Z, Antani S, Long LR, Thoma GR. Web-accessible Cervigram Automatic Segmentation Tool. 
SPIE Medical Imaging Conference. March 2010;7628
Ackerman MJ. Computer briefs: meaningful use?. 
J Med Pract Manage. 2010 Mar-Apr;25(5):320-1.
Ackerman MJ, Siegel, E, Wood, F. Interactive Science Publishing: A joint OSA-NLM project. 
Information Services & Use. 2010 Jan-Feb;30:39-50. DOI: 10.3233/ISU-2010-0612.
Liu J, Subramanian K, Yoo TS. Accurate motion parameter estimation for colonoscopy tracking using a regression method. 
In: Karssemeijer N, Summer RM, editors. Proceedings of SPIE Medical Imaging 2010: Computer-Aided Diagnosis; 2010 Feb 13-18; San Diego;7624:11 pages. DOI: 10.1117/12.844433.
Rahman MM, Antani S, Long LR, Demner-Fushman D, Thoma GR. Multi-Modal Query Expansion Based on Local Analysis for Medical Image Retrieval. 
Lecture Notes in Computer Science. First MICCAI International Workshop on Medical Content-Based Retrieval for Clinical Decision Support (MCBR-CDS 2009); part of the 12th International Conference on Medical Image Computing and Computer Assisted Interventio February 2010;5853/2010(doi: 10.1007/978-3-642-11769-5):110-9..
Locatis C, Berner ES, Hammack G, Smith S, Maisiak R, Ackerman MJ. An exploratory study of co-location as a factor in synchronous, collaborative medical informatics distance education. 
BMC Res Notes. 2010 Feb 2;3:30. doi: 10.1186/1756-0500-3-30.
Bodenreider O, Mougin F, Burgun A. Automatic Determination of Anti-coagulation Status with NDF-RT. 
Proceedings of the 13th ISMB'2010 SIG meeting Bio-ontologies 2010:140-143
Chen S, Misra D, Thoma GR. Efficient Automatic OCR Word Validation Using Word Partial Format Derivation and Language Model. 
Document Recognition and Retrieval XVII. Proceedings of the SPIE. San Jose, CA. January 2010;7534:75340O-75340O-8
Dumontier M, Andersson B, Batchelor C, Domarew C, Jentzsch A, Luciano J, Pichler E, Prud'hommeaux E, Whetzel PL, Bodenreider O, Clark T, Harland L, Kashyap V, Kos P, Kozlovsky J, McGurk J, Ogbuji C, Samwald M, Schriml L, Tonellato PJ, Zhao J, Stephens S. The Translational Medicine Ontology: Driving Personalized Medicine by Bridging the Gap from Bedside to Bench. 
Proceedings of the 13th ISMB'2010 SIG meeting Bio-ontologies 2010:120-123
Kim J, Le DX, Thoma GR. Naive Bayes and SVM Classifiers For Classifying Databank Accession Number Sentences From Online Biomedical Articles. 
IS&T/SPIE's 22nd Annual Symposium on Electronic Imaging. San Jose, CA. January 2010;7534:75340U-1 - 8
You D, Antani S, Demner-Fushman D, Rahman MM, Govindarju V, Thoma GR. Biomedical Article Retrieval Using Multimodal Features and Image Annotations In Region-based CBIR. 
Document Recognition and Retrieval XVII. Edited by Likforman-Sulem, Laurence; Agam, Gady. Proceedings of the SPIE. San Jose, CA. January 2010;7534:75340V-75340V-12.
Zhang X, Zou J, Le DX, Thoma GR. A Stacked Sequential Learning Method For Investigator Name Recognition From Web-based Medical Articles. 
17th Document Recognition and Retrieval Conference (SPIE-DR&R). San Jose, CA. January 2010;7534:753404-7
Rahman MM, Antani SK, Thoma GR. A Classification-Driven Similarity Matching Framework For Retrieval of Biomedical Images. 
11th ACM International Conference on Multimedia Information Retrieval (MIR 2010). 2010:147-154.
Sahoo SS, Bodenreider O, Hitzler P, Sheth A, Thirunarayan K. Provenance Context Entity (PaCE): Scalable Provenance Tracking for Scientific RDF Data. 
SSDBM: Springer, 2010. p. 461-470
Cohen T, Widdows D, Schvaneveldt RW, Rindflesch TC. Logical Leaps and Quantum Connectives: Forging Paths through Predication Space. 
AAAI-Fall 2010 Symposium on Quantum Informatics for Cognitive, Social, and Semantic Processes
Keselman A, Rosemblat G, Kilicoglu H, Fiszman M, Jin H, Shin D, Rindflesch TC. Adapting Semantic Natural Language Processing Technology to Address Information Overload in Influenza Epidemic Management. 
Journal of the American Society for Information Science and Technology (JASIST), 61(12):2531-2543, 2010
Zuckerman AE, Downs SM, McDonald CJ, Weisman JL, Ross DA. Newborn Screening as the Model for Interoperable Genetic Data. 
AMIA Annu Symp Proc. 2010
Cardillo E, Hernandez, Jr G, Bodenreider O. Integrating consumer-oriented vocabularies with selected professional ones from the UMLS using Semantic Web Technologies. 
Proceedings of the eHealth 2010 conference, 2010: p. (paper 10579 - electronic proceedings).
Ackerman MJ, Filart R, Burgess LP, Lee I, Poropatich RK. Developing next-generation telehealth tools and technologies: patients, systems, and data perspectives. 
Telemed J E Health. 2010 Jan-Feb;16(1):93-5. doi: 10.1089/tmj.2009.0153.
Downs SM, van Dyck PC, Rinaldo P, McDonald CJ, Howell RR, Zuckerman A, Downing G. Improving newborn screening laboratory test ordering and result reporting using health information exchange. 
J Am Med Inform Assoc. 2010 Jan-Feb;17(1):13-8. doi: 10.1197/jamia.M3295.
Bodenreider O, Burgun A. A framework for comparing phenotype annotations of orthologous genes. 
Stud Health Technol Inform. 2010;160(Pt 2):1309-13.
Vreeman DJ, McDonald C, Huff SM. LOINC® - A Universal Catalog of Individual Clinical Observations and Uniform Representation of Enumerated Collections. 
Int J Funct Inform Personal Med. 2010;3(4):273-291. Epub 2011 May 23.
Erdogan H, Erdem E, Bodenreider O. Exploiting UMLS semantics for checking semantic consistency among UMLS concepts. 
Stud Health Technol Inform. 2010;160(Pt 1):749-53.
Fiszman M, Bray B, Shin D, Kilicoglu H, Bennett GC, Bodenreider O, Rindflesch TC. Combining relevance assignment with quality of the evidence to support guideline development. 
Stud Health Technol Inform. 2010;160(Pt 1):709-13.
Bekhuis T, Demner-Fushman D. Towards automating the initial screening phase of a systematic review. 
Stud Health Technol Inform. 2010;160(Pt 1):146-50.
Mortensen J, Bodenreider O. Comparing Pharmacologic Classes in NDF-RT and SNOMED CT. 
Proc SMBM 2010:119-124.
Zeng-Treitler Q, Kim H, Rosemblat G, Kesselman A. Can multilingual machine translation help make medical record content more comprehensible to patients?. 
Stud Health Technol Inform. 2010;160(Pt 1):73-7.
Neve L, Long LR, Antani SK. Software: Boundary Marking Tool 2 (BMT2). 
Liu J, Subramanian K, Yoo TS. Region flow: a multi-stage method for colonoscopy tracking. 
Med Image Comput Comput Assist Interv. 2010;13(Pt 2):505-13.
Baorto D, Li L, Cimino JJ. Practical Experience with the Maintenance of a Large Ontology for an Academic Medical Center. 
Journal of Biomedical Informatics; 2009 Jun;42(3):494-503)
Lowekamp B, Chen D. A Framework for Improved Regression Testing Based Upon CTest and CDash. 
The Insight Journal. Web. 2009 Jul-Dec.
Humphrey SM, Névéol A, Gobeil J, Ruch P, Darmoni SJ, Browne AC. Comparing a Rule Based vs. Statistical System for Automatic Categorization of MEDLINE Documents According to Biomedical Specialty. 
J Am Soc Inf Sci Technol. 2009 Dec 1;60(12):2530-2539.
Fontelo P, Liu F. A novel tool for translational research discovery. 
Clin Transl Sci. 2009 Dec;2(6):391. doi: 10.1111/j.1752-8062.2009.00139.x.
Demner-Fushman D, Simpson M, Antani S, Thoma GR. Annotation and retrieval of clinically relevant images. 
Int J Med Inform. 2009 Dec;78(12):e59-67. doi: 10.1016/j.ijmedinf.2009.05.003. Epub 2009 Jul 9.
Williams R, Tse T. ClinicalTrials.gov: A public database of clinical research. . 
Presented at: American Public Health Association 137th Annual Meeting and Expo; November 2009; Philadelphia, PA.
Mork JG, Bodenreider O, Demner-Fushman D, Doagan RI, Lang F-M, Lu Z, Névéol A, Peters L, Shooshan SE, Aronson AR. NLM's I2B2 tool system description. 
Third i2b2 Workshop on Natural Language Processing Challenges for Clinical Records, November, San Francisco, 2009
Sneiderman C, Rosemblat G, Bray B, Fiszman M, Rindflesch TC. Matching Clinical Observations in Published Cardiology Case Reports to LOINC [Abstract]. 
AMIA Annu Symp Proc; 2009 Nov 14-18; San Francisco. p. 1036.
Mougin F, Bodenreider O, Burgun A. Identifying anatomical concepts associated with ICD10 diseases. 
Proceedings of the 8th Conference on Terminology and Artificial Intelligence (TIA 2009), 2009: p. (electronic proceedings: http://www.irit.fr/TIA09/start_here.htm).
Lu C, Humphrey SM, Rogers W, Browne AC. Development of a semantic type based WSD tool [Abstract]. 
AMIA Annu Symp Proc 2009:943.
Kasiviswanathan K, Fontelo P. Connecting the OLPC: a Model for Developing Countries. 
AMIA Annu Symp Proc; 2009 Nov 14-18; San Francisco. p. 904.
Liu F, Fontelo P. Infobuttons Linked to Indivo, a Patient Controlled Health Record. 
AMIA Annu Symp Proc; 2009 Nov 14-18; San Francisco. p. 940.
Ducut E, Liu F, Quion N, Fontelo P. TB-SMS: A Short Messaging Service (SMS) Medication Reminder Application for DOTS. 
AMIA Annu Symp Proc; 2009 Nov 14-18; San Francisco. p. 827.
Encinas MA, Ducut E, Liu F, Avila JM, Diwa M, Fontelo P. Development of a Virtual Slide Library in a Developing Country. 
AMIA Annu Symp Proc; 2009 Nov 14-18; San Francisco. p. 836.
Fontelo P, Liu F. Consensus TBL Summaries for Clinical Decision-making. 
AMIA Annu Symp Proc; 2009 Nov 14-18; San Francisco. p. 846.
Fontelo P, Liu F, Cravedi K. Found in Translation: Tracking and Tagging Translational Research. 
AMIA Annu Symp Proc. 2009 Nov 14-18; San Francisco. p. 823.
Aronson AR, Lang FM. The Evolution of MetaMap, a Concept Search Program for Biomedical Text. 
AMIA Annu Symp Proc. 2009 Nov:22
Cohen T, Schvaneveldt R, Rindflesch TC. Predication-based semantic indexing: permutations as a means to encode predications in semantic space. 
AMIA Annu Symp Proc. 2009 Nov 14;2009:114-8.
Geller J, Morrey CP, Xu J, Halper M, Elhanan G, Perl Y, Hripcsak G. Comparing inconsistent relationship configurations indicating UMLS errors. 
AMIA Annu Symp Proc. 2009 Nov 14;2009:193-7.
Hristovski D, Kastrin A, Peterlin P, Rindflesch TC. Semantic relations for interpreting DNA microarray data. 
AMIA Annu Symp Proc. 2009 Nov 14;2009:255-9.
Haerian K, McKeeby J, DiPatrizio G, Cimino JJ. Use of clinical alerting to improve the collection of clinical research data. 
AMIA Annu Symp Proc. 2009 Nov 14;2009:218-22.
Burgun A, Mougin F, Bodenreider O. Two approaches to integrating phenotype and clinical information. 
AMIA Annu Symp Proc. 2009 Nov 14;2009:75-9.
An L, Obradovic Z, Smith D, Bodenreider O, Megalooikonomou V. Mining Association Rules among Gene Functions in Clusters of Similar Gene Expression Maps. 
Workshop proceedings of the IEEE International Conference on Bioinformatics and Biomedicine (BIBM09) -- Workshop on Data Mining in Functional Genomics 2009: p. 254-259
Ackerman MJ. Computer briefs: personalized medicine. 
J Med Pract Manage. 2009 Nov-Dec;25(3):194-5.
Bodenreider O. Provenance information in biomedical knowledge repositories – A use case. 
Proceedings of the First International Workshop on the role of Semantic Web in Provenance Management (SWPM 2009), 2009: p. (electronic proceedings: http://ceur-ws.org/Vol-526/).
Fung K, Berglund D, Scichilone R, Brear H, Giannangelo K. SNOMED CT to ICD-10 map development process diagram. 
Meeting of the WHO Collaborating Centers for the Family of International Classifications. October 2009.
Fung K, Berglund D, Scichilone R, Brear H, Giannangelo K. SNOMED CT to ICD-10 mapping project update - a joint task for IHTSDO and WHO-FIC. 
Meeting of the WHO Collaborating Centers for the Family of International Classifications. October 2009.
Yoo TS, Silver D, Correa C, Chen D, Moran A. Volumetric Bodies - the Exhibition. 
IEEE VisWeek 2009 Interactive Demo & Art Exhibit; 2009 Oct 12-16; Atlantic City, New Jersey.
Névéol A, Mork JG, Aronson AR. Comment on 'MeSH-up: effective MeSH text classification for improved document retrieval'. 
Bioinformatics. 2009 Oct 15;25(20):2770-1; author reply 2772. doi: 10.1093/bioinformatics/btp483. Epub 2009 Aug 11.
Névéol A, Shooshan SE, Humphrey SM, Mork JG, Aronson AR. A recent advance in the automatic indexing of the biomedical literature. 
J Biomed Inform. 2009 Oct;42(5):814-23. doi: 10.1016/j.jbi.2008.12.007. Epub 2008 Dec 30.
Demner-Fushman D, Chapman WW, McDonald CJ. What can natural language processing do for clinical decision support?. 
J Biomed Inform. 2009 Oct;42(5):760-72. doi: 10.1016/j.jbi.2009.08.007. Epub 2009 Aug 13.
Lowekamp B, Chen D, Santoroski J, Yaniv Z, Yoo TS. Software: SimpleITK. 
Simonaitis L, McDonald CJ. Using National Drug Codes and drug knowledge bases to organize prescription records from multiple sources. 
Am J Health Syst Pharm. 2009 Oct 1;66(19):1743-53. doi: 10.2146/ajhp080221.
Fiszman M, Demner-Fushman D, Kilicoglu H, Rindflesch TC. Automatic summarization of MEDLINE citations for evidence-based medical treatment: a topic-oriented evaluation. 
J Biomed Inform. 2009 Oct;42(5):801-13. doi: 10.1016/j.jbi.2008.10.002. Epub 2008 Nov 5.
Thoma GR, Long LR, Antani S. Biomedical Imaging R and D: Advanced Tools for Cancer Research. 
September 2009 Technical Report to the LHNCBC Board of Scientific Counselors.
Zarin D, Tse T, Williams R. Frequency and nature of changes in primary outcome measures. 
Presented at: Sixth International Congress on Peer Review and Biomedical Publication; September 2009; Vancouver, BC, Canada.
Williams R, Tse T, Zarin D. Characterizing sponsor-imposed restrictions on disclosing results of clinical trials. . 
Presented at: Sixth International Congress on Peer Review and Biomedical Publication; September 2009; Vancouver, BC, Canada.
Bennett AE, Narayan K, Shi D, Hartnell LM, Gousset K, He H, Lowekamp BC, Yoo TS, Bliss D, Freed EO, Subramaniam S. Ion-abrasion scanning electron microscopy reveals surface-connected tubular conduits in HIV-infected macrophages. 
PLoS Pathog. 2009 Sep;5(9):e1000591. doi: 10.1371/journal.ppat.1000591. Epub 2009 Sep 25.
Dawson L, Zarin DA, Emanuel EJ, Friedman LM, Chaudhari B, Goodman SN. Considering usual medical care in clinical trial design. 
PLoS Med. 2009 Sep;6(9):e1000111. doi: 10.1371/journal.pmed.1000111. Epub 2009 Sep 29.
Chen Y, Gu H, Perl Y, Halper M, Xu J. Expanding the extent of a UMLS semantic type via group neighborhood auditing. 
J Am Med Inform Assoc. 2009 Sep-Oct;16(5):746-57. doi: 10.1197/jamia.M2951. Epub 2009 Jun 30.
Ackerman MJ. Computer Briefs: The Smart Home. 
J Med Pract Manage. 2009 Jul-Aug;25(1):68-9.
Kim J, Le DX, Thoma GR. Inferring Grant Support Types From Online Biomedical Articles. 
22nd IEEE ISCBMS. Albuquerque, NM. August 2009
Ackerman MJ. Computer briefs: the smart home. 
J Med Pract Manage. 2009 Jul-Aug;25(1):68-9.
Zarin DA. Clinical trials registry expands. Interview by Bridget M. Kuehn. 
JAMA. 2009 Jul 1;302(1):22. doi: 10.1001/jama.2009.891.
Tse T, Williams RJ, Zarin DA. Reporting "basic results" in ClinicalTrials.gov. 
Chest. 2009 Jul;136(1):295-303. doi: 10.1378/chest.08-3022.
Tse T, Williams RJ, Zarin DA. Update on Registration of Clinical Trials in ClinicalTrials.gov. 
Chest. 2009 Jul;136(1):304-5. doi: 10.1378/chest.09-1219.
Xu X, Lee DJ, Antani SK, Long LR, Archiband JK. Using Relevance Feedback with Short-term Memory for Content-based Spine X-ray Image Retrieval. 
J Neurocomputing. June 2009;72(10-12):2259-69.
Bangalore AK, Sood AK. Securing web servers using self-cleansing intrusion tolerance (SCIT). 
2009 Second International Conference on Dependability. 2009:60-5.
Vizenor LT, Bodenreider O, McCray AT. Auditing associative relations across two knowledge sources. 
J Biomed Inform. 2009 Jun;42(3):426-39. doi: 10.1016/j.jbi.2009.01.004.
Zhu X, Fan JW, Baort D, Weng C, Cimino JJ. A review of auditing methods applied to the content of controlled biomedical terminologies. 
J Biomed Inform. 2009 Jun;42(3):413-25. doi: 10.1016/j.jbi.2009.03.003. Epub 2009 Mar 12.
Bodenreider O, Peters LB. A graph-based approach to auditing RxNorm. 
J Biomed Inform. 2009 Jun;42(3):558-70. doi: 10.1016/j.jbi.2009.04.004. Epub 2009 Apr 24.
Cimino JJ, Hayamizu TF, Bodenreider O, Davis B, Stafford GA, Ringwald M. The caBIG terminology review process. 
J Biomed Inform. 2009 Jun;42(3):571-80. doi: 10.1016/j.jbi.2008.12.003. Epub 2008 Dec 25.
Mougin FL, Bodenreider O, Burgun A. Analyzing polysemous concepts from a clinical perspective: application to auditing concept categorization in the UMLS. 
J Biomed Inform. 2009 Jun;42(3):440-51. doi: 10.1016/j.jbi.2009.03.008. Epub 2009 Mar 18.
McDonald CJ, Fung K, Wang Y, Lynch P, Hook J, Vreeman D. Towards a standardized HL7 clinical data capture tool – with a trial implementation in NLM’s personal health record. 
10th International HL7 Interoperability Conference. May 2009.
Xue Z, Long LR, Antani SK, Jeronimo J, Thoma GR. Image-retrieval System Aids Cervical Cancer Studies. 
SPIE Newsroom. April 2009
Lowekamp B. IO Streaming in ITK. 
Kitware Source. 2009 Apr;9:5-7.
Fung KW. Applied Medical Terminology Research. 
April 2009 Technical Report to the LHNCBC Board of Scientific Counselors.
Gordon S, Lotenberg S, Long LR, Antani SK, Jeronimo J, Greenspan H. Evaluation of uterine cervix segmentations using ground truth from multiple experts. 
Comput Med Imaging Graph. 2009 Apr;33(3):205-16. doi: 10.1016/j.compmedimag.2008.12.002. Epub 2009 Feb 13.
Heymann JAW, Shi D, Kim S, Bliss D, Milne JLS, Subramaniam S. 3D imaging of mammalian cells with ion-abrasion scanning electron microscopy. 
J Struct Biol. 2009 Apr;166(1):1-7. doi: 10.1016/j.jsb.2008.11.005. Epub 2008 Dec 10.
Hsu W, Antani SK, Long LR, Neve L, Thoma GR. SPIRS: a Web-based image retrieval system for large biomedical databases. 
Int J Med Inform. 2009 Apr;78 Suppl 1:S13-24. doi: 10.1016/j.ijmedinf.2008.09.006. Epub 2008 Nov 8.
Deserno TM, Antani S, Long LR. Ontology of gaps in content-based image retrieval. 
J Digit Imaging. 2009 Apr;22(2):202-15. doi: 10.1007/s10278-007-9092-x. Epub 2008 Feb 1.
McDonald CJ. Protecting Patients In Health Information Exchange: A Defense Of The HIPAA Privacy Rule. 
Health Aff (Millwood). 2009 Mar-Apr;28(2):447-9. doi: 10.1377/hlthaff.28.2.447.
Gardner RM, Overhage JM, Steen EB, Munger BS, Holmes JH, Williamson JJ, Detmer DE, Ash JS, Cimino JJ, Covvey D, Gardner RM, Nelson NC, Safran C, Shiffman RN, Spallek H, AMIA Board of Directors. Core content for the subspecialty of clinical informatics. 
J Am Med Inform Assoc. 2009 Mar-Apr;16(2):153-7. Epub 2008 Dec 11
Greenspan H, Gordon S, Zimmerman G, Lotenberg S, Jeronimo J, Antani S, Long LR. Automatic Detection of Anatomical Landmarks In Uterine Cervix Images. 
IEEE Trans Med Imaging. 2009 Mar;28(3):454-68
Ackerman MJ. Computer briefs: medical IT revolution or evolution. 
J Med Pract Manage. 2009 Mar-Apr;24(5):314-5.
Overby CL, Tarczy-Hornoch P, Demner-Fushman D. The potential for automated question answering in the context of genomic medicine: An assessment of existing resources and properties of answers. 
Summit on Translat Bioinforma. 2009 Mar 1;2009:1-25.
Xue Z, Long LR, Antani SK, Jeronimo J, Thoma GR. Segmentation of Mosaicism in Cervicographic Images Using Support Vector Machines. 
Proc. SPIE 7259, Medical Imaging 2009, Lake Buena Vista, Florida, United States: Image Processing, 72594X (27 March 2009); doi: 10.1117/12.812318; http://dx.doi.org/10.1117/12.812318.
Schulz S, Beisswanger, van den Hoek L, Bodenreider O, van Mulligen EM. Alignment of the UMLS Semantic Network with BioTop: Methodology and Assessment. 
Bioinformatics 2009;25(12):i69-i76
Collins SA, Currie LM, Bakken S, Cimino JJ. Information needs, infobutton manager use, and satisfaction by clinician type: a case study. 
J Am Med Inform Assoc. 2009 Jan-Feb;16(1):140-2. Epub 2008 Oct 24.
Kilicoglu H, Demner-Fushman D, Rindflesch TC, Wilczynski NL, Haynes RB. Towards Automatic Recognition of Scientifically Rigorous Clinical Research Evidence. 
J Am Med Inform Assoc. 2009 Jan-Feb;16(1):25-31. Epub 2008 Oct 24.
Locatis C, Gaines C, Liu W, Gill MJ. Extending a Blended Education Programme to Native American High School Students in Alaska. 
J Vis Commun Med. 2009 Jan;32(1):8-13.
Deserno TM, Long LR, Greenspan H. Content-based Image Retrieval: Major Challenges for Biomedical Applications. 
Intl Journal of Healthcare Information Systems and Informatics. January 2009;4(1):i-iii
You D, Apostolova E, Antani SK, Demner-Fushman D, Thoma GR. Figure content analysis for improved biomedical article retrieval. 
Proceedings of IS&T/SPIE Electronic Imaging, 2009, San Jose, California, United States, Document Recognition and Retrieval XVI; 72470V (2009), 1-10; doi: 10.1117/12.805976
Zhang X, Zou J, Le DX, Thoma GR. A Semi-supervised Learning Method to Classify Grant Support Zone in Web-based Medical Articles. 
Proc SPIE Electronic Imaging Science and Technology, Document Recognition and Retrieval. January 2009;7247:7247 OW(1-8)
Anne A, Bagayoko C, Fontelo P. Evaluation de BabelMeSH en Francais. 
IRBM 2009. DOI: 10.1016/j.irbm.2009.06.006.
Hristovski D, Kastrin A, Peterlin B, Rindflesch TC. Combining Semantic Relations and DNA Microarray Data for Novel Hypotheses Generation. 
Lecture Notes in Bioinformatics. Springer
Lee DJ, Antani S, Chang Y, Long LR, Christensen P, Jeronimo J. CBIR of Spine X-ray Images On Inter-vertebral Disc Space and Shape Profiles Using Feature Ranking and Voting Consensus. 
Data & Knowledge Engineering, Special Issue on Knowledge Discovery in Medicine. 2009.
Mariño-Ramírez L, Tharakaraman K, Bodenreider O, Spounge J, Landsman D. Identification of cis-regulatory Elements in Gene Co-expression Networks Using A-GLAM. 
Methods Mol Biol. 2009;541:1-22.
Zweigenbaum P, Demner-Fushman D. Bioinformatics: Tools and Applications. 
Springer 2009.
Demner-Fushman D, Antani SK, Simpson M. Web Interface: Open-I. 
Pontet F, Magdal Petersen U, Fuentes-Arderiu X, Nordin G, Bruunshuus I, Ihalainen J, Karlsson D, Forsum U, Dybkaer R, Schadow G, Kuelpmann W, Ferard G, Kang D, McDonald C, Hill G. Clinical laboratory sciences data transmission: the NPU coding system. 
Stud Health Technol Inform. 2009;150:265-9.
Long LR, Antani SK, Deserno TM, Thoma GR. Content-based Image Retrieval in Medicine: Retrospective Assessment, State of the Art, and Future Directions. 
Int J Healthc Inf Syst Inform. 2009 Jan 1;4(1):1-16
Apostolova E, Channin DS, Demner-Fushman D, Furst J, Lytinen S, Raicu D. Automatic segmentation of clinical texts. 
2009 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Minneapolis, MN, 2009, pp. 5905-5908. doi: 10.1109/IEMBS.2009.5334831
Deserno TM, Antani S, Long LR. Content-based image retrieval for scientific literature access. 
Methods Inf Med. 2009;48(4):371-80. doi: 10.3414/ME0561. Epub 2009 Jul 20.
Lindberg DA, Howe SE. "My flying machine was out of order". 
Trans Am Clin Climatol Assoc. 2009;120:99-111.
Du H, Yoo TS, Qin H. PDE-based medial axis extraction and shape manipulation of arbitrary meshes. 
Journal of Systems Science and Complexity. 2008 Dec;21(4):601-17.
Zeng K, Bodenreider O, Kilbourne J, Nelson SJ. Standards, Security and Usability: Experience with MyMedicationList [Abstract]. 
Proc. AMIA Spring Congress 2008
Bodenreider O. Biomedical Ontologies in Action: Role in Knowledge Management, Data Integration and Decision Support. 
Geissbuhler A, Kulikowski C, editors. IMIA Yearbook of Medical Informatics 2008. Methods Inf Med, 2008. 47(Suppl 1): p. 67-79.
Bodenreider O. Ontologies and Data Integration in Biomedicine: Success Stories and Challenging Issues. 
In: Bairoch A, Cohen-Boulakia S, Froidevaux C, editors. Proceedings of the Fifth International Workshop on Data Integration in the Life Sciences (DILS 2008); Berlin Heidelberg New York: Springer; 2008. p. 1-4
Bodenreider O. Semantic Web for Translational Biomedicine: Two Pilot Experiments [Abstract]. 
Proc. MIA Summit on Translational Bioinformatics 2008:141
Kilicoglu H, Fiszman M, Rodriguez A, Shin D, Ripple AM, Rindflesch TC. Semantic MEDLINE: A Web Application for Managing the Results of PubMed Searches. 
Proc. Third Int'l Symposium for Semantic Mining in Biomedicine, 69-76
Huang KC, Geller J, Halper M, Perl Y, Xu J. Using WordNet synonym substitution to enhance UMLS source integration. 
Artif Intell Med. June 2009;46(2):97-109. doi: 10.1016/j.artmed.2008.11.008. Epub 2008 Dec 30.
Burgun A, Bodenreider O. Accessing and Integrating Data and Knowledge for Biomedical Research. 
Yearb Med Inform. 2008:91-101
Mougin F, Burgun A, Bodenreider O, Chabalier J, Loreal O, Le Beux P. Automatic Methods for Integrating Biomedical Data Sources in a Mediator-Based System. 
Proc DILS 2008. Berlin Heidelberg New York: Springer; 2008. p. 61-76
Peters L, Bodenreider O. Using the RxNorm Web Services API for Quality Assurance Purposes. 
AMIA Annu Symp Proc. 2008 Nov 6:591-5.
Rogers J, Bodenreider O. SNOMED CT: Browsing the Browsers. 
Proc of the Third International Conference on Knowledge Representation in Medicine (KR-MED 2008) 2008:30-36
Bodenreider O, Coban ZH, Doganay MC, Erdem E, Kosucu H. A preliminary report on answering complex queries related to drug discovery using answer set programming. 
Proceedings of the 3rd International Workshop on Applications of Logic Programming to the (Semantic) Web and Web Services (ALPSWS2008), 2008: p. 85-90 (electronic proceedings: http://ceur-ws.org/Vol-434/).
Fontelo P, Liu F, Zhang K, Ackerman MJ. Extending the benefits of one laptop per child to health. 
BMJ. 2008 Dec 1;337:a2459. doi: 10.1136/bmj.a2459.
Hansen RA, Wanzhu T, Wang J, Ambuehl R, McDonald CJ, Murray MD. Risk of adverse gastrointestinal events from inhaled corticosteroids. 
2008 Nov;28(11):1325-34.
Neveol A, Shooshan SE, Claveau V. Automatic Inference of Indexing Rules for MEDLINE. 
BMC Bioinformatics. 2008 Nov 19;9 Suppl 11:S11
Demner-Fushman D, Ananiadou S, Cohen KB, Pestian J, Tsujii J, Webber B. Themes in biomedical natural language processing: BioNLP08. 
BMC Bioinformatics. 2008 Nov 19;9 Suppl 11:S1.
Zarin DA, Tse T. Tracking health services research studies [Letter]. 
JAMA. 2008 Nov 19;300(19):2252; author reply 2252. doi: 10.1001/jama.2008.612.
Wang, Wei D, Xu J, Elhanan G, Perl Y, Halper M, Chen Y, Spackman KA, Hripcsak G. Auditing complex concepts in overlapping subsets of SNOMED. 
AMIA Annu Symp Proc. November 2008:273-7.
Sneiderman CA, Demner-Fushman D, Fung KW, Bray B. UMLS-based Automatic Image Indexing. 
AMIA Annu Symp Proc; 2008 Nov 8-12; Washington DC. p. 1141.
Mahmoud MA, Al-Khafaji JT, Al-Shorbaji N, Sara K, Al-Ubaydli M, Ghazzaoui R, Liu F, Fontelo P. BabelMeSH and PICO Linguist in Arabic. 
AMIA Annu Symp Proc; 2008 Nov 8-12; Washington DC. p. 944.
Liu F, Fontelo P, Fiszman M. Clinically-Weighted Terms in the Evaluation of MeSH Translations: BabelMeSH in Portuguese as a Model. 
AMIA Annu Symp Proc; 2008 Nov 8-12; Washington DC. p. 1027.
Bernal AB, Tolentino PA, Gavino AI, Fontelo P, Marcelo AB. Nursing informatics: challenges to Philippine nursing curriculum. 
AMIA Annu Symp Proc; 2008 Nov 8-12; Washington DC. p. 876.
Ducut EG, Liu F, Fontelo P. The Cost of Being Wireless: A Usage Analysis of the PubMed for Handhelds Portal at the Point-of-Care. 
AMIA Annu Symp Proc; 2008 Nov 8-12; Washington DC. p. 936.
Fontelo P, Liu F, Ducut EG. QR Code for Medical Information Uses. 
AMIA Annu Symp Proc; 2008 Nov 8-12; Washington DC. p. 945.
Hensel BK, Fontelo P. Physician Attitudes Toward SMS/Text Messaging in Medicine. 
AMIA Annu Symp Proc; 2008 Nov 8-12; Washington DC. p. 965.
Fontelo P, Liu F, Zhang K, Ackerman MJ, Tolentino H. The one laptop per Child (OLPC) computer for health clinics in developing countries. 
AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2008 Nov 8-12; Washington DC. p. 192-6.
Fiszman M, Ortiz E, Bray BE, Rindflesch TC. Semantic Processing to Support Clinical Guideline Development. 
AMIA Annu Symp Proc. 2008 Nov 6:187-91
Sharp M, Bodenreider O, Wacholder N. A Framework for Characterizing Drug Information Sources. 
AMIA Annu Symp Proc. 2008 Nov 6:662-6
Kilicoglu H, Demner-Fushman D, Rindflesch TC, Wilczynski NL, Haynes RB. Toward Automatic Recognition of High Quality Clinical Evidence. 
AMIA Annu Symp Proc. 2008 Nov 6:368
Wei D, Wang, Perl Y, Xu J, Halper M, Spackman KA. Complexity measures to track the evolution of a SNOMED hierarchy. . 
AMIA Annu Symp Proc. 2008 Nov 6:778-82.
Pearson G, Gill M, Thoma G. Web screening of US nursing homes by location and quality. 
AMIA Annu Symp Proc. 2008 Nov 6:576-80.08:576-80.
Zeng K, Bodenreider O, Nelson SJ. Design and Implementation of a Personal Medication Record - MyMedicationList. 
AMIA Annu Symp Proc. 2008 Nov 6:844-8
Lu C, Humphrey SM, Browne AC. A method for verifying a vector-based text classification system . 
AMIA Annu Symp Proc. 2008 Nov 6:1030.
Lu C, Browne AC, Allen C, Divita G. Using Lexical tools to convert Unicode characters to ASCII. 
AMIA Annu Symp Proc. 2008 Nov 6:1031.
Bodenreider O. Issues in Mapping LOINC Laboratory Tests to SNOMED CT. 
AMIA Annu Symp Proc. 2008 Nov 6:51-5
Gavino AI, Tolentino PA, Bernal AB, Fontelo P, Marcelo AB. Telemedicine via Short Messaging System (SMS) in Rural Philippines. 
AMIA Annu Symp Proc; 2008 Nov 8-12; Washington DC. p. 952.
Aronson AR, Mork JG, Neveol A, Shooshan SE, Demner-Fushman D. Methodology for Creating UMLS Content Views Appropriate for Biomedical Natural Language Processing. 
AMIA Annu Symp Proc. 2008 Nov 6:21-5
Mougin F, Bodenreider O. Auditing the NCI Thesaurus with Semantic Web Technologies. 
AMIA Annu Symp Proc. 2008 Nov 6:500-4
Nelson SJ, Zeng K, Bodenreider O. MyMedicationList: Integrating Personal Medication Records with Resources. 
AMIA Annu Symp Proc. 2008 Nov 6:1228
Fung KW, McDonald C, Bray BE. RxTerms - a drug interface terminology derived from RxNorm. 
AMIA Annu Symp Proc. 2008 Nov 6:227-31
Demner-Fushman D, Seckman C, Fisher C, Hauser SE, Clayton J, Thoma GR. A prototype system to support evidence-based practice. 
AMIA Annu Symp Proc. 2008 Nov 6:151-5.
He Y, Kayaalp M. Biological Entity Recognition with Conditional Random Fields. 
AMIA Annu Symp Proc. 2008 Nov 6:293-7
Ackerman MJ. Computer Briefs: Home Telemedicine. 
J Med Pract Manage. 2008 Sep-Oct;24(2):86-7.
Sahoo SS, Bodenreider O, Rutter JL, Skinner KJ, Sheth AP. An Ontology-driven Semantic Mash-up of Gene and Biological pathway information: Application to the domain of nicotine dependence. 
J Biomed Inform. 2008 Oct;41(5):752-65. Epub 2008 Feb 29
Cheng W, Pearson G. Algorithm Developed To Make More Reliable Links To Better Photographic Views of Nursing Homes For Prototype "Nursing Home Screener" Web Site. 
Poster Section III at NIH Research Festival (TECH-3). National Institutes of Health October 2008. Bethesda, MD. October 2008.
Friedlin FJ, McDonald C. A Software Tool for Removing Patient Identifying Information from Clinical Documents. 
J Am Med Inform Assoc. 2008 Sep-Oct;15(5):601-10. Epub 2008 Jun 25
Ducut E, Fontelo P. Mobile Devices in Health Education: Current Use and Practice. 
J Computing in Higher Education; Fall 2008; 20(2):59-68. Published online 2008 Oct 23. DOI: 10.1007/s12528-008-9003-2.
Kim H, Goryachev S, Rosemblat G, Browne A, Keselman A, Zeng-Treitler Q. Beyond Surface Characteristics: A New Health Text-specific Readability Measurement. 
AMIA Annu Symp Proc. 2007 Oct 11:418-22
Karargyris A, Bourbakis N. A methodology for detecting blood-based abnormalities in wireless capsule endoscopy videos. 
BioInformatics and BioEngineering, 2008. BIBE 2008. 8th IEEE International Conference. 2008 Oct 8; pp 1-6. doi: 10.1109/BIBE.2008.4696806.
Richesson RL, Fung KW, Krischer JP. Heterogeneous but 'Standard' Coding Systems for Adverse Events: Issues in Achieving Interoperability Between Apples and Oranges. 
Contemp Clin Trials. 2008 Sep;29(5):635-45. Epub 2008 Mar 5
Neveol A, Deserno TM, Darmoni SJ, Guld MO, Aronson AR. Natural Language Processing Versus Content-BasedImage Analysis for Medical Document Retrieval. 
J Am Soc Inf Sci Technol. 2008 Sep 18;60(1):123-134
Fontelo P, Liu F. Bringing the Medical Library Where Needed - At the Point of Care. 
Technical Report to the LHNCBC Board of Scientific Counselors; 2008 Sep. 61 pages.
Ackerman MJ. Computer briefs: home telemedicine. 
J Med Pract Manage. 2008 Sep-Oct;24(2):86-7.
Jeronimo J, Wentzensen N, Long R, Schiffman M, Dunst ST, Allen RA, Walker JL, Gold MA, Zuna RE, Sherman ME, Wacholder S, Wang SS. Evaluation of Linear Array Human Papillomavirus Genotyping Using Automatic Optical Imaging Software. 
J Clin Microbiol. 2008 Aug;46(8):2759-65. Epub 2008 Jun 11
Callaghan F, Chang CCH. Multivariate Survival Trees for Competing Risks. 
Joint Statistical Meeting Proceedings, Denver CO, 2008.
Kim J, Le DX, Thoma GR. Naive Bayes Classifier for Extracting Bibliographic Information From Biomedical Online Articles. 
Proc 2008 International Conference on Data Mining. Las Vegas, Nevada, USA. July 2008;II:373-8
Seetharaman S, Stanley RJ, De S. Live Wire Segmentation Tool for Osteophyte Detection in Lumbar Spine X-Ray Images. 
Proc IEEE ICETET 2008. Nagpur, India. July 2008:715-20
Locatis CN, Berner E, Matthews P, Hammack G, Smith S, Maisiak R. Is Student Collocation a Factor in Synchronous Distance Education?. 
International Assoc of Medical Science Educators Annual Meeting; 2008 Jul 25-29; Salt Lake City.
Sneiderman C, Fontelo P, Ackerman MJ. XO Computer Application to Medical Science Education. 
J International Assoc of Medical Science Educators: Special Issue Poster Abstracts of the 12th IAMSE Annual Meeting (2008 Jul 25-29; Salt Lake City);18(supplement 2):100.
Zhu Y, Huang X, Lopresti D, Long R et al. Web-based Multi-observer Segmentation Evaluation Tool. 
Proc. 21st IEEE CBMS. Jyvaskyla, Finland. June 2008:167-9
Antani S, Long LR, Thoma GR. Bridging the Gap: Enabling CBIR in Medical Applications. 
Proc IEEE CBMS. Jyvaskyla, Finland. June 2008:4-6
Chang Y, Antani S, Lee DJ, Gledhill K, Long LR, Christensen P. CBIR of Spine X-ray Images on Inter-vertebral Disc Space and Shape Profiles. 
Proc IEEE CBMS. Jyvaskyla, Finland. June 2008:224-9.
Misra D, Seamans J, Thoma GR. Testing the Scalability of a DSpace-based Archive. 
Proc. IS&T Archiving 2008. Bern, Switzerland. June 2008:36-40
Liu J, Subramanian K, Yoo T, Van Uitert R. A Stable Optic-flow Based Method for Tracking Colonoscopy Images. 
Proceedings of MMBIA 2008, the IEEE Computer Society Workshop on Mathematical Methods in Biomedical Image Analysis; 2008 Jun 23-28; Anchorage, Alaska. DOI: 10.1109/CVPRW.2008.4562990.
Felts RL, Bennett A, Shi D, Freed E, Lifson J, Lowekamp B, Yoo TS, Bliss D, Subramaniam S. 3D Imaging of HIV transmission and entry using electron tomography and ion-abrasion scanning electron microscopy. 
Three Dimensional Electron Microscopy: Technical Advances and Recent Breakthroughs in 3DEM. Gordon Research Conference; 2008 Jun 15-20; Lucca (Barga), Italy.
Ducut E, Liu F, Fontelo P. An Update on Uniform Resource Locator (URL) Decay in MEDLINE Abstracts and Measures for Its Mitigation. 
BMC Med Inform Decis Mak. 2008 Jun 11;8:23. DOI: 10.1186/1472-6947-8-23.
Demner-Fushman D, Antani SK, Simpson M, Thoma GR. Combining Medical Domain Ontological Knowledge and Low-level Image Features for Multimedia Indexing. 
Procf OntoImage 2008, part of LREC 2008. Marrakech, Morrocco. May 2008:CDROM Proceedings
Tharakaraman K, Bodenreider O, Landsman D, Spouge JL, Marino-Ramirez. The Biological Function of Some Human Transcription Factor Binding Motifs Varies with Position Relative to the Transcription Start Site. 
Nucleic Acids Res. 2008 May;36(8):2777-86. Epub 2008 Mar 26
Zhang K, Locatis CN, Liu WL. A Study of Higher Quality Video Applications on Access Grid (Presentation). 
Proceedings of 2008 Access Grid Retreat; 2008 May 28-30; Simon Fraser University, Vancouver, Canada. http://www.accessgrid.org/retreat/2008/abstracts/zhang.pdf.
Zhu Y, Huang X, Wang W, Lopresti D, Long LR, Antani SA, Xue Z, Thoma GR. Balancing the Role of Priors in Multi-Observer Segmentation Evaluation. 
J Signal Process Syst. 2008 May 28;55(1-3):185-207
Ackerman MJ. Computer briefs: the EMR, PHR, and you. 
J Med Pract Manage. 2008 May-Jun;23(6):348-9.
Huang X, Wang W, Xue Z, Antani SK, Long LR, Jeronimo J. Tissue Classification using Cluster Features for Lesion Detection in Digital Cervigrams. 
Proc. SPIE Medical Imaging 2008. April 2008;6914:69141Z-1-8
Kho AN, Lemmon L, Commiskey M, Wilson SJ, McDonald C. Use of a Regional Health Information Exchange to Detect Crossover of Patients with MRSA between Urban Hospitals. 
J Am Med Inform Assoc. 2008 Mar-Apr;15(2):212-6. Epub 2007 Dec 20.
Xue Z, Long R, Antani SK, Thoma GR. A Web-accessible Content-based Cervicographic Image Retrieval System. 
Proc SPIE Medical Imaging 2008. April 2008;6919:691907-1-9
Aronson AR, Mork JG, Lang FM, Rogers WJ, Neveol A. NLM Medical Text Indexer: A Tool for Automatic and Assisted Indexing. 
April 2008 Technical Report to the LHNCBC Board of Scientific Counselors.
Thoma GR, Ford G, Demner-Fushman D, Antani SK, Chung M. Software: Panorama. 
Thoma GR, Le DX, Kim I, Kim JW, Moon C, Tran L, Zou J. Automation to Accelerate the Production of MEDLINE. 
April 2008 Technical Report to the LHNCBC Board of Scientific Counselors.
Goedert JJ, Scoppio BM, Pfeiffer R, Neve L, Federici AB, Long LR, Dolan BM, Brambati M, Bellinvia M, Lauria C, Preiss L, Boneschi V, Whitby D, Brambilla L. Treatment of classic Kaposi sarcoma with a nicotine dermal patch: a phase II clinical trial. phase II clinical trial. 
J Eur Acad Dermatol Venereol. 2008 Sep;22(9):1101-9. doi: 10.1111/j.1468-3083.2008.02720.x. Epub 2008 Apr 1.r 1.
Kho AN, Dexter PR, Warvel JS, Belsito AW, Commiskey M, Wilson SJ, Hui SL, McDonald CJ. An Effective Computerized Reminder for Contact Isolation of Patients Colonized or Infected with Resistant Organisms. 
Int J Med Inform. 2008 Mar;77(3):194-8. Epub 2007 Mar 29
Locatis C, Vega A, Bhagwat M, Liu W, Conde J. A Virtual Computer Lab for Distance Biomedical Technology Education. 
BMC Med Educ. 2008 Mar 13;8:12. DOI: 10.1186/1472-6920-8-12.
Zarin DA, Tse T. Moving Towards Transparency of Clinical Trials. 
Science. 2008 Mar 7;319(5868):1340-2.
Overhage JM, Grannis S, McDonald CJ. A comparison of the completeness and timeliness of automated electronic laboritory reporting and spontaneous reporting of notifiable conditions. 
Am J Public Health. 2008 Feb;98(2):344-50. Epub 2008 Jan 2
Antani SK, Demner-Fushman D, Li J, Srinivasan BV, Thoma GR. Exploring Use of Images in Clinical Articles for Decision Support in Evidence-Based Medicine. 
Proc. SPIE-IS/T Electronic Imaging. San Jose, CA. January 2008;6815:68150Q(1-10)
Kim IC, Le DX, Thoma GR. Hybrid approach combining contextual and statistical information for identifying and statistical information for identifying MEDLINE citation terms. 
Proc. SPIE-IS/T Electronic Imaging. San Jose, CA. January 2008;6815:68150P(1-9)
Stanley RJ, Antani S, Long LR, Thoma GR, Gupta K, Das M. Size-invariant Descriptors for Detecting Regions of Abnormal Growth in Cervical Vertebrae. 
Comput Med Imaging Graph. 2008 Jan;32(1):44-52. Epub 2007 Oct 22
Zou J, Le DX, Thoma GR. Extracting a Sparsely-Located Named Entity from Online HTML Medical Articles Using Support Vector Machine. 
Proc SPIE-IS/T Electronic Imaging. San Jose, CA. January 2008;6815:6815OP(1-10)
Leroy G, Fiszman M, Rindflesch TC. The Impact of Directionality in Predications on Text Mining. 
Hawaii International Conference on System Sciences (HICSS-41), January 2008
Xu X, Lee DJ, Antani S, Long LR. A Spine X-ray Image Retrieval System using Partial Shape Matching. 
IEEE Trans Inf Technol Biomed. 2008 Jan;12(1):100-8.
Ackerman MJ. Computer briefs: it all comes down to education. 
J Med Pract Manage. 2008 Jan-Feb;23(4):250-1.
Tolentino H, Kamadjeu R, Fontelo P, Liu F, et al. Scanning the Emerging Infectious Diseases Horizon - Visualizing ProMED Emails Using EpiSPIDER. 
Advances in Disease Surveillance. 2007;2:169.
Jung B, Lee S, Fontelo P, Liu F, Kim S. Construction of Korean Version PICO Linguist and BabelMeSH. 
Korean Society of Medical Informatics (KOSMI) Fall Congress Proceedings 2007.
Locatis C. Performance, Instruction, and Technology in Health Care Education. 
Chapter 20 in: Reiser RA, Dempsey JV, editors. Trends and Issues in Instructional Design and Technology. Upper Saddle River, New Jersey: Merrill/Prentice Hall; 2007 (second edition). p. 197-208.
Rosemblat G, Graham L, Tse T. Extractive Summarization in Clinical Trials Protocol Summaries: A Case Study. 
Proc IICAI-2007, pp. 1824-1837
Demner-Fushman D, Humphrey SM, Ide NC, Loane RF, Mork J, Ruch P, Ruiz ME, Smith LH, Wilbur WJ, Aronson AR. Combining Resources to Find Answers to Biomedical Questions. 
Proc TREC 2007, 205-14
Mamlin BW, Overhage JM, Tierney WM, Dexter PR, McDonald CJ. Clinical decision support within the Regenstrief Medical Record System [Book//chapter]. 
Health Informatics, Berner, Eta S. (Ed.) 2nd ed., 2007, 190-21.
Zou J, Le DX, Thoma GR. Online Medical Journal Article Layout Analysis. 
Proc SPIE-IS&T Electronic Imaging 2007, SPIE Vol. 6500: 65000V (1-12)
Zeng K, Bodenreider O, Kilbourne J, Nelson SJ. RxNav: An Integrated View on Drug Information. 
Proc AMIA Annu Symp; 2007:1202
Deserno TM, Antani SK, Long LR. Exploring Access to Scientific Literature Using Content-Based Image Retrieval. 
Proc SPIE Medical Imaging 2007. Vol. 6516: 65160L-1-8.
Zhang S, Bodenreider O. Experience in Aligning Anatomical Ontologies. 
Int J Semant Web Inf Syst. 2007;3(2):1-26
Gallagher ME. Keeping the Promises Associated with Your Digital Assets: Is it Possible?. 
In: Archiving 2007 Final Program and Proceedings, pp.146-149, 2007.
Zeng K, Bodenreider O. Experience in Integrating Large RDF-based Biomedical Knowledge Resources with Oracle [Abstract]. 
Proc 8th International Oracle Life Sciences User Group Meeting 2007:(electronic proceedings: http://www.olsug.org/wiki/images/d/d1/Kelly_Zheng.pdf)
Deserno TM, Antani SK, Long LR. Gaps in Content-Based Image Retrieval. 
Proc SPIE Medical Imaging 2007. Vol. 6516: 65160J-1-11
Hsu W, Long LR, Antani SK. SPIRS: A Framework for Content-based Image Retrieval from Large Biomedical Databases. 
Stud Health Technol Inform. 2007;129(Pt 1):188-92.
Xue Z, Antani SK, Long LR, Thoma GR. Comparative Performance Analysis of Cervix ROI Extraction and Specular Reflection Removal Algorithms for Uterine Cervix Image Analysis. 
Proc SPIE Medical Imaging 2007. Vol. 6512: 65124I-1-9
Fung KW, Bodenreider O, Aronson AR, Hole WT, Srinivasan S. Combining Lexical and Semantic Methods of Inter-terminology Mapping Using the UMLS. 
Stud Health Technol Inform. 2007;129(Pt 1):605-9.
Logan RA, Tse T. A Multidiscipline Conceptual Framework for Consumer Health Informatics. 
Stud Health Technol Inform. 2007;129(Pt 2):1169-73
Bangalore AK, Divita G, Humphrey SM, Browne AC, Thorn KE. Automatic Categorization of Google Search Results for Medical Queries using JDI. 
Medinfo 2007: Proc. of the 11th World Congress on Health (Medical) Informatics
Sahoo SS, Zeng K, Bodenreider O, Sheth A. From 'Glycosyltransferase' to 'Congenital Muscular Dystrophy': Integrating Knowledge from NCBI Entrez Gene and the Gene Ontology. 
Stud Health Technol Inform. 2007;129(Pt 2):1260-4
Zhang S, Bodenreider O. Lessons Learned from Cross-Validating Alignments Between Large Anatomical Ontologies. 
Stud Health Technol Inform. 2007;129(Pt 1):822-6
Névéol A, Mork JG, Aronson AR. Automatic indexing of specialized documents: using generic vs. domain-specific document representations. 
Proc 2007 Workshop BioNL'07, 183-92.
Rosemblat G, Logan R. The Consumers' Perspective: Text Features and Readability of Consumer Health Text. 
Mednet 2007: Germany. 12 Oct 2007
Bashyam V, Divita G, Bennett DB, Browne AC, Taira RK. A normalized lexical lookup approach to identifying UMLS concepts in free text. 
Stud Health Technol Inform. 2007;129(Pt 1):545-9.
Hauser SE, Demner-Fushman D, Jacobs JL, Humphrey SM, Ford G, Thoma GR. Using Wireless Handheld Computers to Seek Information at the Point of Care: An Evaluation by Clinicians. 
J Am Med Inform Assoc. 2007 Nov-Dec;14(6):807-15. Epub 2007 Aug 21.
Conran R, Fontelo P, Liu F, Fontelo M, White E. Slide2Go: A Virtual Slide Collection for Pathology Education. 
AMIA Annu Symp Proc; 2007 Nov 10-14; Chicago. p. 918.
Fontelo P, Liu F, Muin M, Ducut E, Ackerman MJ, Paalan-Vasquez F. MMSPix - A Multimedia Messaging Service (MMS) Medical Images Weblog. 
AMIA Annu Symp Proc; 2007 Nov 10-14; Chicago. p. 956.
Tom O, Fontelo P, Liu F. Do Computer-generated Summaries, 'The Bottom Line (TBL)' Accurately Reflect Published Journal Abstracts?. 
AMIA Annu Symp Proc; 2007 Nov 10-14; Chicago. p. 1135.
Liu F, Fontelo P, Ackerman MJ. BabelMeSH2 and PICO Linguist2: Combined Language Search for MEDLINE/PubMed. 
AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2007 Nov 10-14; Chicago. p. 1036.
Leon SA, Fontelo P. MedlinePlus en Espaniol and Spanish-Speakers. 
AMIA Annu Symp Proc; 2007 Nov 10-14; Chicago. p. 1028.
Zeng K, Bodenreider O, Kilbourne J, Nelson S. RxNav: Towards an Integrated View on Drug Information. 
MEDINFO 2007:386.
Du H, Yoo TS. Visualizing Indexing Similarity Over the NLM Medical Subject Headings (MeSH). 
IEEE InfoVis [Information Visualization] 2007 Conference; 2007 Oct 28-30; Sacramento, California.
Demner-Fushman D, Antani S, Thoma GR. Automatically Finding Images for Clinical Decision Support. 
Proc of IEEE DM-Med 2007. Omaha, NE, October 2007, pp. 139-144
Thorn KE, Bangalore AK, Browne AC. The UMLS Knowledge Source Server: an experience In Web 2.0 technologies. 
AMIA Annu Symp Proc. October 2007:721-5.
Zhang S, Bodenreider O. Identifying Mismatches in Alignments of Large Anatomical Ontologies. 
AMIA Annu Symp Proc. 2007 Oct 11:851-5
Ahlers CB, Hristovski D, Kilicoglu H, Rindflesch TC. Using the Literature-based Discovery Paradigm to Investigate Drug Mechanisms. 
AMIA Annu Symp Proc. 2007 Oct 11:6-10
Fiszman M, Rosemblat G, AhlersCB, Rindflesch TC. Identifying Risk Factors for Metabolic Syndrome in Biomedical Text. 
AMIA Annu Symp Proc. 2007 Oct 11:249-53
Hurdle JF, Botkin J, Rindflesch TC. Leveraging Semantic Knowledge in IRB Databases to Improve Translation Science. 
AMIA Annu Symp Proc. 2007 Oct 11:349-53
Névéol A, Shooshan SE, Mork JG, Aronson AR. Fine-grained indexing of the biomedical literature: MeSH subheading attachment for a MEDLINE indexing tool. 
AMIA Annu Symp Proc. 2007 Oct 11:553-7.
Lin J, Demner-Fushman D. Semantic clustering of answers to clinical questions. 
AMIA Annu Symp Proc. 2007 Oct 11:458-62.
Xue Z, Antani S, Long LR, Jeronimo J, Thoma GR. Investigating CBIR Techniques for Cervicographic Images. 
AMIA Annu Symp Proc. 2007 Oct 11:826-30.
Zeng K, Bodenreider O. Integrating the UMLS into an RDF-Based Biomedical Knowledge Repository. 
AMIA Annu Symp Proc. 2007 Oct 11:1170.
Zhu Y, Long LR, Antani S, Xue Z, Thoma GR. Web-based STAPLE for Quality Estimation of Multiple Image Segmentations. 
Poster at 20th NIH Research Festival (IMAG-12), September 2007, National Institutes of Health
Simpson M, Ford G, Antani S, Demner-Fushman D, Thoma GR. A Lightweight Statistics Package for Interactive Publications. 
Poster at 20th NIH Research Festival (TECH-15), September 2007, National Institutes of Health
Chen S, Mao S, Thoma GR. Simultaneous Layout Style and Logical Entity Recognition in a Heterogeneous Collection of Documents. 
Proc ICDAR2007. Curitiba, Brazil; September 2007, pp. 118-22
Srinivasan B, Antani S, Demner-Fushman D, Thoma GR. Identification and Segmentation of Multi-Panel Images in Biomedical Journal Articles [Poster]. 
Poster at 20th NIH Research Festival (BIOINFO-1), September 2007, National Institutes of Health
Li J, Demner-Fushman D, Thoma GR. Localizing Text and Symbols in Images from Biomedical Journal Articles. 
Poster at 20th NIH Research Festival (BIOINFO-6), September 2007, National Institutes of Health
Bennett A, Liu J, Van Ryk D, Bliss D, Arthos J, Henderson RM, Subramaniam S. Cryoelectron Tomographic Analysis of an HIV-neutralizing Protein and Its Complex with Native Viral gp120. 
J Biol Chem. 2007 Sep 21;282(38):27754-9. Epub 2007 Jun 28
Bodenreider O, Burgun A. Oncologic Pathology in Biomedical Terminologies: Challenges for Data Integration. 
Proc APIII conference on "Anatomic Pathology Informatics and Imaging Support for Translational Medicine", Pittsburgh, Pennsylvania, September 9-12, 2007:Abstract 342.
Ackerman MJ, Yoo TS. 3D Informatics: High Performance Computing at the Lister Hill Center. 
Technical Report to the LHNCBC Board of Scientific Counselors; 2007 Sep. 29 pages.
Ackerman MJ. Computer briefs: the personal health record. 
J Med Pract Manage. 2007 Sep-Oct;23(2):84-5.
Drake TA, Braun J, Marchevsky A, Kohan IS, Fletcher C, Chueh H, Beckwith B, Berkowicz D, Kuo F, Zeng QT, Balis U, Holzbach A, McMurry A, Gee CE, McDonald C, Schadow G, Davis M, Hattab EM, Blevins L, Hook J, Becich M, Crowley RS, Taube SE, Berman J. A System for Sharing Routine Surgical Pathology Specimens Across Institutions: The Shared Pathology Informatics Network. 
Hum Pathol. 2007 Aug;38(8):1212-25. Epub 2007 May 8
Antani SK, Deserno TM, Long LR, Thoma GR. Geographically Distributed Complementary Content-Based Image Retrieval Systems for Biomedical Image Informatics. 
Stud Health Technol Inform. 2007;129(Pt 1):493-7
Zweigenbaum P, Demner-Fushman D, Yu H, Cohen KB. Frontiers of biomedical text mining: current progress. 
Brief Bioinform. 2007 Sep;8(5):358-75. Epub 2007 Oct 30.
Zou J, Le DX, Thoma GR. Structure and Content Analysis for HTML Medical Articles: A Hidden Markov Model Approach. 
Proc August 2007 ACM Symposium on Document Engineering. pp. 199-201
Marcelo AB, Fontelo P. An Evaluation of the Usability of Accessing MEDLINE over Short Messaging System. 
In: Kuhn KA, Warren JR, Leong T-Y, editors. Stud Health Technol Inform [Studies in Health Technology and Informatics] -- MEDINFO 2007: Proceedings of the 12th World Congress on Health (Medical) Informatics -- Building Sustainable Health Systems; 2007 Aug 20-24; Brisbane, Australia:235-6. IOS Press.
Fontelo P, Liu F, Leon S, Anne A, Ackerman MJ. PICO Linguist and BabelMeSH: Development and Partial Evaluation of Evidence-based Multilanguage Search Tools for MEDLINE/PubMed. 
In: Kuhn KA, Warren JR, Leong T-Y, editors. Stud Health Technol Inform [Studies in Health Technology and Informatics] -- MEDINFO 2007: Proceedings of the 12th World Congress on Health (Medical) Informatics -- Building Sustainable Health Systems; 2007 Aug 20-24; Brisbane, Australia;129(Part I):817-21. IOS Press.
Sneiderman CA, Demner-Fushman D, Fiszman M, Ide NC, Rindflesch TC. Knowledge-Based Methods to Help Clinicians Find Answers in MEDLINE. 
J Am Med Inform Assoc. 2007 Nov-Dec;14(6):772-80. Epub 2007 Aug 21.
Jing X, Kay S, Hardiker N, Marley T. Ontology-based knowledge base model construction-OntoKBCF. . 
Stud Health Technol Inform. 2007;129(Pt 1):785-90.
Mao S, Mansukhani P, Thoma GR. Combining Static Classifiers and Class Syntax Models for Logical Entity Recognition in Scanned Historical Documents. 
Proc IEEE CVPR, Minneapolis, Minnesota, June 2007, pp. 1-8.
Jeronimo J, Massad S, Castle PE, Schiffman M, NIH/ASCCP Research Group. Inter-observer Agreement in the Evaluation of Digitized Cervical Images. 
Obstet Gynecol. Vol. 197, Issue 1, July 2007
Jeronimo J, Massad LS, Schiffman M for the NIH-ASCCP Research Group. Visual Appearance of the Uterine Cervix: Correlation with Human Papillomavirus Detection and Type. 
Am J Obstet Gynecol. 2007 Jul;197(1):47.e1-8
Ruch P, Geissbuhler A, Gobeill J, Lisacek F, Tbahriti I, Veuthey A, Aronson AR. Using Discourse Analysis to Improve Text Categorization in MEDLINE. 
Stud Health Technol Inform. 2007;129(Pt 1):710-5
Aronson AR, Bodenreider O, Demner-Fushman D, Fung KW, Lee VK, Mork JG, Névéol A, Peters L, Rogers WJ. From indexing the biomedical literature to coding clinical text: experience with MTI and machine learning approaches. 
Proc 2007 Workshop BioNL'07, June 2007, pp. 105-112, Prague, Czech Republic.
Ackerman MJ. Computer Briefs: Time to Upgrade Your Old Operating System. 
J Med Pract Manage. 2007 May-Jun;22(6):339-40.
Fiszman M, Demner-Fushman D, Lang FM, Goetz P, Rindflesch TC. Interpreting Comparative Constructons in Biomedical Text. 
Proc 2007 Workshop BioNL'07, June 2007, pp. 137-144, Prague, Czech Republic
Schardt C, Adams MB, Owens T, Jeitz S, Fontelo P. Utilization of the PICO Framework to Improve Searching PubMed for Clinical Questions. 
BMC Med Inform Decis Mak. 2007 Jun 15;7:16.
Srinivasan Y, Nutter BS, Mitra SD, Yang S, Phillips B, Long LR. Challenges in Automated Detection of Cervical Intraepithelial Neoplasia. 
Proc SPIE Medical Imaging 2007. Vol. 6514: 65140F-1-11
Lotenberg S, Gordon S, Long LR, Antani SK, Jeronimo J, Greenspan H. Automatic Evaluation of Uterine Cervix Segmentations. 
Proc. SPIE Medical Imaging 2007. Vol. 6515: 65151J-1-12.
Ide NC, Loane RF, Demner-Fushman D. Essie: A Concept-based Search Engine for Structured BiomedicalText. 
J Am Med Inform Assoc. 2007 May-Jun;14(3):253-63. Epub 2007 Feb 28
Walker FL, Gallagher ME, Thoma GR. PDF File Migration to PDF/A: Technical Considerations. 
Proc IS&T Archiving 2007. Arlington, Virginia, May 2007; 6-11.
Misra D, Mao S, Rees J, Thoma GR. Archiving a Historic Medico-legal Collection: Automation and Workflow Customization. 
Proc IS&T Archiving 2007. Arlington, Virginia, May 2007; 157-61
Zarin DA, Ide NC, Tse T, Harlan WR, West JC, Lindberg DA. Issues in the registration of clinical trials. 
JAMA. 2007 May 16;297(19):2112-20
Zhang K, Locatis CN, Liu WL. An Enhanced Shared Presentation Tool for the Access Grid (Presentation). 
Proceedings of Access Grid 2007; 2007 May 14-16; Chicago.
Ruttenberg A, Clark T, Bug W, Samwald M, Bodenreider O, Chen H, Doherty D, Forsberg K, Gao Y, Kashyap V, Kinoshita J, Luciano J, Marshall MS, Oqbuji C, Rees J, Stephens S, Wong GT, Wu E, Zaccaqnini D, Hongsermeier T, Neumann E, Herman I, Cheung KH. Advancing Translational Research with the Semantic Web. 
BMC Bioinformatics. 2007 May 9;8 Suppl 3:S2
Ackerman MJ. Next Generation Networking: Distributed Multimedia Information for Healthcare. 
Multimedia Tools and Applications: Special Issue on Distributed Adaptation, Representation and Processing of Multimedia Information. 2007 Apr;33(1):5-11.
Logan RA. Clinical, Classroom or Personal Education: Attitudes About Health Literacy. 
J Med Libr Assoc. 2007 Apr;95(2):127-37, e48
Fontelo P, Liu F, Ackerman MJ. Potential Applications of RFID Technology in Medicine. 
Telemed J E Health. 2007 Apr;13(2):176-7.
Zarin DA. Scientific Issues in the Registration of Clinical Trials. 
April 2007 Technical Report to the LHNCBC Board of Scientific Counselors.
Locatis C. Why Media Matter. 
Performance Improvement Quarterly. 2007 Mar;20(1):9-22. DOI: 10.1111/j.1937-8327.2007.tb00428.x.
Drazen JM, Zarin DA. Salvation by Registration. 
N Engl J Med 356;2
Antani SK, Deserno TM, Long LR, Guld MO, Neve L, Thoma GR. Interfacing Global and Local CBIR Systems for Medical Image Retrieval. 
Proc Workshop on Medical Imaging Research (Bildverarbeitung fur die Medizin). March 2007; 166-71.
Brennan PF, Rindflesch TC. Towards Linking Patients and Clinical Information: Detecting UMLS Concepts in E-mail. 
J Biomed Inform. 2003 Aug-Oct;36(4-5):334-41
Bodenreider O, Smith, Kumar A, Burgun A. Investigating Subsumption in SNOMED CT: An Exploration into Large Description Logic-based Biomedical Terminologies. 
Artif Intell Med. 2007 Mar;39(3):183-95. Epub 2007 Jan 22
Zheng S, Mork P, Bodenreider O, Bernstein PA. Comparing Two Approaches for Aligning Representations of Anatomy. 
Artif Intell Med. 2007 Mar;39(3):227-36. Epub 2007 Jan 23
Zarin DA, Keselman A. Registering a Clinical Trial in ClinicalTrials.gov. 
Chest. 2007 Mar;131(3):909-12. Epub 2007 Feb 15
Keselman A, Tse T, Crowell J, Browne AC, Ngo L, Zeng Q. Assessing Consumer Health Vocabulary Familiarity: An Exploratory Study. 
J Med Internet Res. 2007 Mar 14;9(1):e5
Kayaalp M. Separation of Data, Interpreters and Likelihood. 
March 2007 Technical Report to the LHNCBC Board of Scientific Counselors.
Zeng QT, Tse T, Divita G, Keselman A, Crowell J, Browne AC, Goryachev S, Ngo L. Term Identification Methods for Consumer Health Vocabulary Development. 
J Med Internet Res. 2007 Feb 28;9(1):e4.
Ackerman MJ. Computer Briefs: Open Science: The Coming Paradigm Shift. 
J Med Pract Manage. 2007 Jan-Feb;22(4):212-3.
Leon SA, Fontelo P, Green L, Ackerman MJ, Liu F. Evidence-based Medicine Among Internal Medicine Residents in a Community Hospital Program Using Smart Phones. 
BMC Medical Informatics and Decision Making. 2007 Feb 21;7:5. DOI: 10.1186/1472-6947-7-5.
Tolentino HD, Matters MD, Walop W, Law B, Tong W, Liu F, Fontelo P, Kohl K, Payne DC. A UMLS-based Spell Checker for Natural Language Processing in Vaccine Safety. 
BMC Med Inform Decis Mak. 2007 Feb 12;7:3. DOI: 10.1186/1472-6947-7-3.
Kho AN, Hui S, Kesterson JG, McDonald C. Which observations from the complete blood cell count predict mortality for hospitalized patients?. 
J Hosp Med. 2007 Jan;2(1):5-12.
Lussier YA, Bodenreider O. Clinical Ontologies for Discovery Applications. 
In: Baker CJO, Cheung K-H, editors. Semantic Web: Revolutionizing knowledge discovery in the life sciences. New York: Springer; 2007. p. 101-119.
Sahoo S, Bodenreider O, Zeng K, Sheth AP. An Experiment in Integrationg Large Biomedical Knowledge Resources with RDF: Application to Associating Genotype and Phenotype Information. 
Proc Workshop on Health Care and Life Sciences Data Integration for the Semantic Web at WWW2007 (electronic proceedings: http://www2007.org/workshops/paper_149.pdf)
Ahlers C, Fiszman M, Demner-Fushman D, Lang F, Rindflesch TC. Extracting Semantic Predications from MEDLINE Citations for Pharmacogenomics. 
Pacific Symposium on Biocomputing 2007 12:209-220
Demner-Fushman D, Lin J. Answering Clinical Questions with Knowledge-based and Statistical Techniques. 
Computational Linguistics. 2007 Jan;33(1):63-103
Kim IC, Le DX, Thoma GR. Identification of "comment-on sentences" in online biomedical documents using support vector machines. . 
Proc. SPIE conference on Document Recognition and Retrieval, 6500:65000O (1-8), San Jose, January 2007.
Névéol A, Shooshan SE, Humphrey SM, Rindflesch TC, Aronson AR. Multiple approaches to fine-grained indexing of the biomedical literature. 
Pac Symp Biocomput. 2007:292-303.
Fomous C, Miller N. The Role of the National Library of Medicine Web Sites in Newborn Screening Education. 
Ment Retard Dev Disabil Res Rev. 2006;12(4):305-12
Azuaje F, Wang H, Zheng H, Bodenreider O, Chesneau A. Predictive Integration of Gene Ontology-Driven Similarity and Functional Interactions. 
Proc ICDM 2006, Workshop on Data Mining in Bioinformatics: IEEE Computer Society Press; 2006. p. 114 - 119
Logan RA, Shin JH, Park J. Prevailing Impressions of Social Actors in Korean News Coverage of a Public Health Crisis. 
Science Communication. 25:4:399-418 (June 2004)
Fontelo P, Liu F, Ackerman MJ. SMS (Short Message Service) for Medline/Pubmed Access at the Point-of Care. 
Telemed J E Health. 2006;12(2):237.
Johnson CR, Moorhead RM, Munzner TM, Pfister H, Rheingans P, Yoo TS. NIH-NSF Visualization Research Challenges Report. 
IEEE Press.
Siegel ER, Logan RA, Harnsberger RL, Cravedi K, Krause JA, Lyon B, Hajarian K, Uhl J, Ruffin A, Lindberg DA. Information Rx: Evaluation of a New Informatics Tool for Physicians, Patients, and Libraries. 
Inf Serv Use. 2006;26(1):1-10.
Mougin F, Burgun A, Bodenreider O. Using WordNet to Improve the Mapping of Data Elements to UMLS for Data Sources Integration. 
AMIA Annu Symp Proc. 2006:574-8
Huang X, Lin J, Demner-Fushman D. Evaluation of PICO as a knowledge representation for clinical questions. 
AMIA Annu Symp Proc. 2006:359-63.
Sneiderman C, Demner-Fushman D, Fiszman M, Rosemblat G, Lang FM, Norwood D, Rindflesch TC. Semantic Processing to Enhance Retrieval of Diagnosis Citations from Medline. 
AMIA Annu Symp Proc. 2006:1104
Golbreich C, Zhang S, Bodenreider O. The Foundational Model of Anatomy in OWL: Experience and Perspectives. 
Web Semant. 2006;4(3):181-195
Fomous C, Mitchell JA, McCray A. Genetics Home Reference: Helping Patients Understand the Role of Genetics in Health and Disease. 
Community Genet. 2006;9(4):274-8
Rosemblat G, Tse T. User Study of a Spanish-language ClinicalTrials.gov Prototype System. 
AMIA Annu Symp Proc. 2006:659-63
Thoma GR, Mao S, Misra D, Rees J. Design of a Digital Library for Early 20th Century Medico-legal Documents. 
Proc ECDL 2006. Eds: Gonzalo J et al. Berlin: Springer-Verlag; LNCS 4172: 147-57
Divita G, Browne AC, Loanne R. dTagger: A POS Tagger. 
AMIA Annu Symp Proc. 2006:200-3
Ruch P, Tbahriti I, Bobeill J, Aronson AR. Argumentative Feedback: A Linguistically-motivated Term Expansion for Information Retrieval. 
Proc COLING/ACL 2006, 675-82
Bodenreider O. Lexical, Terminological and Ontological Resources for Biological Text Mining. 
Ananiadou S, McNaught J, editors. Text mining for biology and biomedicine: Artech House; 2006. p. 43-66.
Bodenreider O, Zhang S. Comparing the Representation of Anatomy in the FMA and SNOMED CT. 
AMIA Annu Symp Proc. 2006:46-50
Zhang S, Bodenreider O, Golbreich C. Experience in Reasoning with the Foundational Model of Anatomy in OWL DL. 
Pac Symp Biocomput. 2006:200-11
Hauser SE, Demner-Fushman D, Ford GM, Jacobs JL, Thoma GR. Preliminary Comparison of Three Search Engines for Point of Care Access to MEDLINE Citations. 
AMIA Annu Symp Proc. 2006:945
Vizenor L, Bodenreider O, Peters L, McCray AT. Enhancing Biomedical Ontologies through Alignment of Semantic Relationships: Exploratory Approaches. 
AMIA Annu Symp Proc. 2006:804-8.
Demner-Fushman D, Hauser SE, Humphrey SM, Ford GM, Jacobs JL, Thoma GR. MEDLINE as a Source of Just-in-Time Answers to Clinical Questions. 
AMIA Annu Symp Proc. 2006:190-4.
Zeng K, Bodenreider O, Kilbourne J, Nelson SJ. RxNav: A Web Service for Standard Drug Information. 
AMIA Annu Symp Proc. 2006:1156
Slaughter LA, Soergel D, Rindflesch TC. Semantic Representation of Consumer Questions and Physician Answers. 
Int J Med Inform. 2006 Jul;75(7):513-29. Epub 2005 Aug 24
He Y, Kayaalp M. A Comparison of 13 Tokenizers on MEDLINE. 
December 2006 Technical Report.
Fung KW, Hole WT, Srinivasan S. Who is using the UMLS and how - insights from the UMLS user annual reports. 
AMIA Annu Symp Proc. 2006:274-8.
Mougin F, Burgun A, Bodenreider O. Mapping Data Elements to Terminological Resources for Integrating Biomedical Data Sourcse. 
BMC Bioinformatics. 2006 Nov 24;7 Suppl 3:S6
Mougin F, Burgun A, Bodenreider O. Data Integration Through Data Elements: Mapping Data Elements to Terminological Resources. 
BMC Bioinformatics. 2006 Nov 24;7 Suppl 3:S6.
Zhang K, Liu WL. Extending Interactivity in Grid Collaboration Tools for Long Distance Biomedical Training and Research. 
Proceedings of Supercomputing 2006, the ACM/IEEE International Conference on High Performance Computing, Networking, Storage, and Analysis; 2006 Nov 11-17; Tampa, Florida. New York: ACM. Article 303. DOI: 10.1145/1188455.1188774.
Tolentino H, Matters M, Walop W, Law B, Tong W, Liu F, Fontelo P, Kohl K, Payne D. Concept Negation in Free Text Components of Vaccine Safety Reports. 
AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2006 Nov 11-15; Washington DC. p. 1122.
Muin M, Fontelo P, Ackerman MJ. PubMed Interact: an Interactive Search Application for MEDLINE/PubMed. 
AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2006 Nov 11-15; Washington DC. p. 1039.
Liu F, Fontelo P, Ackerman MJ. BabelMeSH: Development of a Cross-Language Tool for MEDLINE/PubMed. 
AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2006 Nov 11-15; Washington DC. p.1012.
Fontelo P, Liu F, Muin M, Tolentino H, Ackerman MJ. Txt2MEDLINE: Text-Messaging Access to MEDLINE/PubMed. 
AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2006 Nov 11-15; Washington DC. p. 259-63.
Fontelo P, Liu F, Ackerman MJ, Schardt CM, Keitz SA. askMEDLINE: a Report on a Year-long Experience. 
AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2006 Nov 11-15; Washington DC. p. 923.
McDonald CJ, Blevins L, Dexter P, Schadow G, Hook J, Abernathy G, Dugan T, Martin A, Phillips R, Davis M. Demonstration of the Indianapolis SPIN Query Tool for De-identified Access to Content of the Indiana Network for Patient Care’s (a Real RHIO) Database [Demo]. 
AMIA Annu Symp Proc. 2006:1194.
Kroth PJ, Dexter PR, Overhage JM, Knipe C, Hui SL, Belsito A, McDonald CJ. A computerized decision support system improves the accuracy of temperature capture from nursing personnel at the bedside. 
AMIA Annu Symp Proc. 2006:444-8.
Biondich PG, Downs SM, Carroll AE, Shiffman RN, McDonald CJ. Collaboration between the medical informatics community and guideline authors: fostering HIT standard development that matters. 
AMIA Annu Symp Proc. 2006:36-40.
Christensen JD, Hutchins GC, McDonald CJ. Computer automated detection of head orientation for prevention of wrong-side treatment errors. 
AMIA Annu Symp Proc. 2006:136-40.
Simonaitis L, Belsito A, Warvel J, Hui S, McDonald CJ. Extensible Stylesheet Language Formatting Objects (XSL-FO): a Tool to Transform Patient Data into Attractive Clinical Reports. . 
AMIA Annu Symp Proc. 2006:719-23.
Thorne AE, Bangalore A, Browne AC. Plug-and-play UMLS Knowledge Source Server using Web services and portlets. 
AMIA Annu Symp Proc. 2006:1121.
Muin M, Fontelo P. Technical Development of PubMed Interact: an Improved Interface for MEDLINE/PubMed Searches. 
BMC Med Inform Decis Mak. 2006 Nov 3;6:36.
Ackerman MJ. Computer Briefs: The Open Triangle. 
J Med Pract Manage. 2006 Sep-Oct;22(2):105-6.
Wood FB, Siegel ER, Dutcher GA, Ruffin A, Logan RA. The National Library of Medicine's Native American Outreach Portfolio: A Descriptive Overview. 
J Med Libr Assoc. 2005 Oct;93(4 Suppl):S21-34
Siegel ER, Wood FB, Dutcher GA, Ruffin A, Logan RA, Scott J. Assessment of the National Library of Medicine's Health Disparities Plan: A Focus on Native American Outreach. 
J Med Libr Assoc. 2005 Oct;93(4 Suppl):S10-20
Locatis C, Gaines C, Liu W, Gill MJ, Carney J, Foster J, McCall V, Woods M. A Blended Training Approach Using Videoconferencing for Distance Education. 
J Med Libr Assoc. 2006 Oct;94(4):464-8.
Rosemblat G, Logan R, Tse T, Graham L. Text Features and Readability: Expert Evaluation of Consumer Health Text. 
Mednet 2006. October 14-16, 2006. Toronto, Canada
Bodenreider O, Stevens R. Bio-ontologies: Current Trends and Future Directions. 
Brief Bioinform. 2006 Sep;7(3):256-74. Epub 2006 Aug 9
Tsaparas P, Marino-Ramirez L, Bodenreider O. Global Similarity and Local Divergence in Human and Mouse Gene Co-expression Networks. 
BMC Evol Biol. 2006 Sep 12;6:70
Bodenreider O, Rindflesch TC. Advanced Library Services: Developing a Biomedical Knowledge Repository to Support Advanced Information Management Applications. 
September 2006 Technical Report to the LHNCBC Board of Scientific Counselors.
Thoma GR, Long LR, Antani S. Biomedical Imaging Research and Development: Knowledge from Images in the Medical Enterprise. 
September 2006 Technical Report to the LHNCBC Board of Scientific Counselors.
Sittig DF, Ash JS, Ledley RS. The story behind the development of the first whole-body computerized tomography scanner as told by Robert S. Ledley. 
J Am Med Inform Assoc. 2006 Sep-Oct;13(5):465-9. Epub 2006 Jun 23.
Moorhead R, Johnson C, Munzner T, Pfister H, Rheingans P, Yoo TS. Visualization Corner: Visualization Research Challenges: A Report Summary. 
IEEE Computing in Science and Engineering. 2006 Jul-Aug;8(4):66-73. DOI: 10.1109/MCSE.2006.77.
Lin J, Demner-Fushman D. The Role of Knowledge in Conceptual Retrieval: A Study in the Domain of Clinical Medicine. 
Proc SIGIR 2006, pages 99-106, August 2006, Seattle, Washington
Yoo TS, Rheingans P, Chen D, Olano M, Lowekamp B. Animated embroidery: a teapot in modern blackwork. 
ACM SIGGRAPH 2006 Teapot Exhibit entry; 2006 Jul 30-Aug 3; Boston.
Mitchell JA, Fomous C, Fun J. Challenges and strategies of the Genetics Home Reference. 
J Med Libr Assoc. 2006 Jul;94(3):336-42
Rosemblat G, Graham L. Cross-Language Search in a Monolingual Health Information System: Flexible Designs and Lexical Processes. 
Proc ISKO, pages 173-182, Vienna, Austria, July 2006.
Demner-Fushman D, Lin J. Answer Extraction, Semantic Clustering, and Extractive Summarization for Clinical Question Answering. 
Proc COLING/ACL 2006. July 2006, Sydney, Australia
Demner-Fushman D, Lin J. Situated Question Answering in the Clinical Domain: Selecting the Best Drug Treatment for Diseases. 
Proc COLING/ACL 2006 Workshop on Task-Focused Summarization and Question Answering, July 2006, Sydney, Australia
Chen D, Morse BS, Lowekamp B, Yoo TS. Hierarchically partitioned implicit surfaces for interpolating large point set models. 
In: Kim M-S, Shimada K, editors. Advances in Geometric Modeling and Processing. Proceedings of the 4th international conference on Geometric Modeling and Processing (GMP'06); 2006 Jul 26-28; Pittsburgh, Pennsylvania. Lecture Notes in Computer Science 4077. Berlin: Springer-Verlag; 2006. p. 553-62.
Rosemblat G, Graham L. A Pragmatic Approach to Summary Extraction in Clinical Trials. 
Proc HLT-NAACL 06, pages 124-125, New York City, June 2006
Zhang S, Bodenreider O. Law and Order: Assessing and Enforcing Compliance with Ontological Modeling Principles in the Foundational Model of Anatomy. 
Comput Biol Med. 2006 Jul-Aug;36(7-8):674-93. Epub 2005 Sep 6.
Long RL, Antani S, Jeronimo J, Schiffman M, Bopf M, Neve L, Cornwall C, Budihas SC, Thoma GR. Technology for Medical Education, Research, and Disease Screening by Exploitation of Biomarkers in a Large Collection of Uterine Cervix Images. 
Proc CBMS 2006, June 2006, Salt Lake City, Utah; 826-31
Xu X, Lee DJ, Antani S, Long RL. Pre-Indexing for Fast Partial Shape Matching of Vertebrae Images. 
Proc CBMS 2006, June 2006, Salt Lake City, Utah; 105-10
Lin J, Karakos D, Demner-Fushman D, Khudanpur S. Generative Content Models for Structural Analysis of Medical Abstracts. 
Proc 2006 BioNLP'06. June 2006, New York City, New York
Zou J, Le DX, Thoma GR. Combining DOM Tree and Geometric Layout Analysis for Online Medical Journal Article Segmentation. 
Proc JCDL, June 2006, Chapel Hill, NC; 119-28
Yao J, Antani S, Long LR, Thoma GR, Zhang Z. Automatic Medical Image Annotation and Retrieval Using SECC. 
Proc CBMS 2006, June 2006, Salt Lake City, Utah; 105-10
Jeronimo J, Long R, Neve L, Ferris D, Noller K, Spitzer M, Mitra S, Guo J, Nutter B, Castle P, Herrero R, Rodriguez AC, Schiffman M. Preparing Digitized Cervigrams for Colposcopy Research and Education: Determination of Optimal Resolution and Compression Parameters. 
J Low Genit Tract Dis. 2006 Jan;10(1):39-44
Masseroli M, Kilicoglu H, Lang F-M, Rindflesch TC. Argument-predicate Distance as a Filter for Enhancing Precision in Extracting Predications on the Genetic Etiology of Disease. 
BMC Bioinformatics. 2006 Jun 8;7:291.
Marino-Ramirez L, Bodenreider O, Kantz N, Jordan IK. Co-evolutionary Rates of Functionally Related Yeast Genes. 
Evolutionary Bioinformatics Online 2006;2:295-300.
Zhang S, Bodenreider O, Kantz N. Aligning Anatomical Ontologies: The Role of Complex Structural Rules. 
IIAS-Transactions on Systems Research and Cybernetics - Proc InterSymp 2006;VI(2):27-32.
Zhang K, Locatis CN, Liu WL. An Enhanced Shared Browser for the Access Grid. 
Proceedings of Access Grid 2006; 2006 May 15-17; Michigan Information and Technology Center, Ann Arbor.
Ackerman MJ. Anatomy in the Digital Age. 
In: Rifkin BA, Ackerman MJ. Human Anatomy: From the Renaissance to the Digital Age. 2006 May 2. New York: Abrams. p. 318-329.
Benjamin A. Rifkin, Ackerman MJ. Human Anatomy (From the Renaissance to the Digital Age). 
New York: Harry N. Abrams; 2006. 344 pages.
Ackerman MJ. Computer briefs: Mac versus PC. 
J Med Pract Manage. 2006 May-Jun;21(6):329-30.
Munzner T, Johnson C, Moorhead R, Pfister H, Rheingans P, Yoo TS. Visualization Viewpoints: NIH-NSF Visualization Research Challenges Report Summary. 
IEEE Computer Graphics and Applications. 2006 Mar-Apr;26(2):20-24.
McDonald CJ. Computerization can create safety hazards: a bar-coding near miss. 
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Hristovski D, Friedman C, Rindflesch TC. Exploiting Semantic Relations for Literature-Based Discovery. 
AMIA Annu Symp Proc. 2006:349-53
Gallagher ME, Moffatt C. Surviving Change: The First Step Toward Sustaining Your Digital Library. 
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Fiszman M, Rindflesch TC, Kilicoglu H. Summarizing Drug Information in Medline Citations. 
AMIA Annu Symp Proc. 2006; 254-8
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Sabir TF, Hauser SE, Thoma GR. Historical Author Affiliations Assist Verification of Automatically Generated MEDLINE Citations. 
AMIA Annu Symp Proc. 2006:1082
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Demner-Fushman D, Humphrey SM, Ide NC, Loane RF, Ruch P, Ruiz ME, Smith LH, Tanabe LK, Wilbur WJ, Aronson AR. Finding Relevant Passages in Scientific Articles: Fusion of Automatic Approaches vs. an Interactive Team Effort. 
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Jeronimo J, Long R, Neve L, Bopf M, Antani K, Schiffman M. Digital Tools for Collecting Data from Cervigrams for Research and Training in Colposcopy. 
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Antani S, Cheng J, Long J, Long LR, Thoma GR. Medical Validation and CBIR of Spine X-ray Images over the Internet. 
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Thoma GR, Ford G, Chung M, Vasudevan K, Antani S. Interactive Publications: Creation and Usage. 
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Castle PE, Jeronimo J, Schiffman M, Herroro R, Rodriguez AC, Bratti MC, Hildesheim A, Wacholder S, Long LR, Neve L, Pfeiffer R, Burk RD. Age-related changes of the cervix influence human papillomavirus type distribution. 
Cancer Res. 2006 Jan 15;66(2):1218-24.
Humphrey SM, Lu C, Rogers W, Browne AC. Journal descriptor indexing tool for categorizing text according to discipline or semantic type. 
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Humphrey SM, Rogers W, Kilicoglu H, Demner-Fushman D, Rindflesch TC. Word sense disambiguation by selecting the best semantic type based on journal descriptor indexing: preliminary experiment. 
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Jing X, Kay S, Hardiker N. Designing a bio-health information assistant within an EHR. . 
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Bodenreider O, Aubry M, Burgun A. Non-Lexical Approaches to Identifying Associative Relations in the Gene Ontology. 
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Cantor MN, Sarkar INK, Bodenreider O, Lussier YA. GenesTrace: Phenomic Knowledge Discovery Via Structured Terminologies. 
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Aronson AR, Demner-Fushman D, Humphrey SM, Lin J, Liu H, Ruch P, Ruiz ME, Smith LH, Tanabe LK, Wilbur WJ. Fusion of Knowledge-intensive and Statistical Approaches for Retrieving and Annotating Textual Genomics Documents. 
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Antani SK, Natarajan M, Long JL, Long RL, Thoma GR. Developing a Comprehensive System for Content-based Image Retrieval of Image and Text from a National Survey. 
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Bergun A, Bodenreider O, Mougin F. Classifying diseases with respect to anatomy: a study in SNOMED CT. 
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Azuaje F, Wang H, Bodenreider O. Ontology-driven Similarity Approaches to Supporting Gene Functional Assessment. 
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Bergun A, Bodenreider O, Jacquelinet C. Issues in the Classification of Disease Instances with Ontologies. 
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Backer A, Bodenreider O, Karp P, Kelly H, Loranger S, Musen M, Sriram R, Wroe C. Knowledge Integration for Bio-Threat Response. 
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Tolentino HD, Liu F, Sagaram D, Kamadjeu R, Fontelo P, Kohl K, Payne D. Creating a Vaccine Adverse Event Ontology for Public Health. 
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Kim GR, Zambrowicz C, Zhang D, Fontelo P, Abbott PA. Promoting the Usability of Online AMIA Symposium Proceedings. 
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Fontelo P, Liu F, Ackerman MJ. MeSH Speller + askMEDLINE: Auto-completes MeSH Terms Then Searches MEDLINE/PubMed via Free-text, Natural Language Queries. 
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Liu F, Fontelo P, Muin M, Ackerman MJ. Virtual Evidence Cart - RP (VEC-RP). 
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Muin M, Fontelo P, Ackerman MJ. PubMed informer: Monitoring MEDLINE/PubMed Through E-mail Alerts, SMS, PDA Downloads and RSS Feeds. 
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McDonald CJ, Dexter P, Schadow G, Chueh HC, Agernathy G, Hook J, Blevins L, Overhage JM, Berman JJ. SPIN query tools for de-identified research on a humongous database. 
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Laflamme MR, Dexter PR, Graham MF, Hui SL, McDonald CJ. Efficiency, comprehensiveness and cost-effectiveness when comparing dictation and electronic templates for operative reports. 
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Kho A, Dexter P, Warvel J, Commiskey M, Wilson S, McDonald CJ. Computerized reminders to improve isolation rates of patients with drug-resistant infections: design and preliminary results. 
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September 2005 Technical Report to the LHNCBC Board of Scientific Counselors.
Thoma GR, Antani S, Ford GL, Chung M, Vasudevan K. Interactive Publications Research: A Report to the Board of Scientific Counselors. 
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Morse BS, Liu W, Yoo TS, Subramanian KR. Active contours using a constraint-based implicit representation. 
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Zhang K, Andrade H, Raschid L, Sussman A. Query planning for the grid: adapting to dynamic resource availability. 
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Zafar A, Mamlin B, Perkins S, Belsito AM, Overhage JM, McDonald CJ. A simple error classification system for understanding sources of error in automatic speech recognition and human transcription. 
Int J Med Inform. 2004 Sep;73(9-10):719-30.
Yoo TS, editor. Insight Into Images: Principles and Practice for Segmentation, Registration, and Image Analysis. 
Natick, Massachusetts: A.K. Peters; 2004 Aug 16. 410 pages.
Kayaalp M. Bayesian Methods for Diagnosing Physiological Conditions of Human Subjects from Multivariate Time Series Biosensor Data. 
Physiological Data Modeling Contest, the Twenty-First International Conference on Machine Learning (ICML), 2004 July.
Aronson AR, Demner-Fushman D, Humphrey SM, Ide NC, Kim W, Liu H, Loane RF, Mork JG, Smith LH, Tanabe LK, Wilbur WJ, Xie N. Knowledge-intensive and statistical approaches to the retrieval and annotation of genomics MEDLINE citations. 
The Thirteenth Text Retrieval Conference (TREC 2004). 2004:503-11.
Rosemblat G, Tse T, Gemoets D. Adapting A Monolingual Consumer Health System for Cross-Language Information Retrieval. 
Advances in Knowledge Organization, Proceedings of the Eighth International ISKO Conference. 2004 July;9:315-321.
Libbus B, Kilicoglu H, Rindflesch TC, Mork JG, Aronson AR. Using Natural Languge Processing, Locus Link, and the Gene Ontology to Compare OMIM to MEDLINE. 
Proceedings of the HLT-NAACL Workshop on Linking the Biological Literature, Ontologies and Databases: Tools for Users. 2004;:69-76.
Fiszman M, Rindflesch TC, Kilicoglu H. Abstraction Summarization for Managing the Biomedical Research Literature. 
Proceedings of the HLT-NAACL Workshop on Computational Lexical Semantics. 2004;:76-83.
Bopf M, Coleman T, Long LR, Antani S, Thoma GR, Jeronimo J, Schiffman M. An Architecture for Streamlining the Implementation of Biomedical Text/Image Databases on the Web. 
Proc. 17th IEEE Symposium on Computer-Based Medical Systems. 2004 June.;: 563-69.
Hauser SE, Demner-Fushman D, Ford G, Thoma GR. A Testbed System for Mobile Point-Of-Care Information Delivery. 
Proc. 17th IEEE Symposium on Computer-Based Medical Systems. 2004 June;: 147-52.
Jeronimo J, Schiffman M, Long LR, Neve L, Antani S. A Tool for Collection of Region Based Data from Uterine Cervix Images for Correlation of Visual and Clinical Variables Related to Cervical Neoplasia. 
Proc. 17th IEEE Symposium on Computer-Based Medical Systems: IEEE Computer Society. 2004 June.;:558-62.
Stanley RJ, Seetharaman S, Long LR, Antani S, Thoma GR, Downey E. Image Analysis Techniques for the Automated Evaluation of Subaxial Subluxation in Cervical Spine X-Ray Images. 
Proc. 17th IEEE Symposium on Computer-Based Medical Systems: IEEE Computer Society. 2004 June.;: 204-9.
Xu X, Lee DJ, Antani S, Long LR. Partial Shape Matching of Spine X-Ray Shapes Using Dynamic Programming. 
Proc. 17th IEEE Symposium on Computer-Based Medical Systems: IEEE Computer Society. 2004 June.;: 97-102.
Walker FL, Thoma GR. A Web-Based Paradigm for File Migration. 
Proc. of IS and T's Archiving Conference. 2004 April.
Logan RA, Park J, Shin JH. How Two Korean Newspapers Covered a Public Health Crisis. 
Science Communication. 25:4:365-389 (June 2004)
Ackerman MJ. Computer Briefs: Wireless Networking - Security. 
J Med Pract Manage. 2004 May-Jun;19(6):299-300.
Lomax J, McCray AT. Mapping the Gene Ontology Into the Unified Medical Language System. 
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Zhan Zhang, Ackerman MJ, Jixing Li. A Prototype Colon Straightening System for Polyp Detection. 
Proceedings of 17th IEEE Symposium on Computer-Based Medical Systems (CBMS); 2004 Jun 24-25; Bethesda, Maryland:548-52. DOI: 10.1109/CBMS.2004.1311772.
Jing X, Zhang QP, Guo QH, Lu M, Zhu XH, Shi L, Rui W, Shang T. Construction of directory for biomedical databases on INTERNET [Article in Chinese]. 
Beijing Da Xue Xue Bao [J Peking Univ(Health Sci)]. 2004 Jun 18;36(3):322-6.
Kroth PJ, Murray MD, McDonald CJ. Undertreatment of osteoporosis in women, based on detection of vertebral compression fractures on chest radiography. 
Am J Geriatr Pharmacother. 2004 Jun;2(2):112-8.
Kayaalp M. Modeling and Learning Methods; A Report to the Board of Scientific Counselors. 
May 2004 Technical Report to the LHNCBC Board of Scientific Counselors.
Tse T, Gemoets D, Rosemblat G. Consumer Health Information Seeking; A Report to the Board of Scientific Counselors. 
May 2004 Technical Report to the LHNCBC Board of Scientific Counselors.
Kim IC, Kim KK, Suen CY. Word separation in handwritten legal amounts on bank cheques based on spatial gap distances. 
Lecture Notes in Artificial Intelligence (LNAI), vol. 3029, pp. 453-462, May, 2004.
Kim KM, Park JJ, Song MH, Kim I, Suen CY. Binary decision tree using K-means and genetic algorithm for recognizing defect patterns of cold mill strip. 
Lecture Notes in Artificial Intelligence (LNAI), vol. 3029, pp. 341-350, May, 2004.
Zhang S, Mork P, Bodenreider O. Lessons Learned from Aligning two Representations of Anatomy. 
Proc of the First International Workshop on Formal Biomedical Knowledge Representation (KR-MED 2004); 2004. p. 102-108.
Sehgal AK, Srinivasan P, Bodenreider O. Gene Terms and English Words: An Ambiguous Mix. 
Proc of the SIGIR 2004 Workshop on Search and Discovery in Bioinformatics 2004.
Tagare HD, Qian X, Fulbright RK, Long RL, Antani SK. Shape Based Retrieval in NHANES II. 
Proceedings of the 12th Annual ACM International Conference on Multimedia. 2004. 776-779.
Mao S, Kim J, Thoma G. A Dynamic Feature Generation System for Automated Metadata Extraction in Preservation of Digital Materials. 
Proc. International Workshop on Document Image Analysis for Libraries (DIAL2004). 2004 Jan;: 225-32.
Mao S, Kim J, Thoma G. Style-Independent Document Labeling: Design and Performance Evaluation. 
Proc. SPIE - Document Recognition and Retrieval. 2004 Jan;: 14-22.
Yang S, Guo J, King PS, Sriraja Y, Long LR. Multispectral Digital Cervigram Analyser in the Wavelet Domain for Early Detection of Cervical Cancer. 
Proc. SPIE Medical Imaging. 2004 Feb; 5370.
Chamarthy P, Stanley RJ, Cizek G, Long R, Antani S, Thoma G. Image Analysis Techniques for Characterizing Disc Space Narrowing in Cervical Vertebrae. 
Computerized Medical Imaging and Graphics. 2004; 28: 39-50.
Cherukuri M, Stanley RJ, Long R, Antani S, Thoma G. Anterior Osteophyte Discrimination in Lumbar Vertebrae Using Size-Invariant Features. 
Comput Med Imaging Graph. 2004 Jan-Mar;28(1-2):99-108.
Antani S, Xu X, Long R, Thoma G. Partial Shape Matching for CBIR of Spine X-Ray Images. 
Proc. SPIE Electronic Imaging - Storage and Retrieval Methods and Applications for Multimedia. 2004 Jan; 5307: 1-8.
Bodenreider O, McCray AT. Exploring Semantic Groups Through Visual Approaches. 
J Biomed Inform. 2003 Dec;36(6):414-432.
Bodenreider O, Zhang S. Semantic Integration in Biomedicine. 
Proceedings of the Semantic Integration Workshop at the Second International Semantic Web Conference. 2003;: 156-157.
McGowan JJ, Overhage JM, Barnes M, McDonald CJ. Indianapolis I3: the third generation Integrated Advanced Information Management Systems. 
J Med Libr Assoc. 2004 Apr;92(2):179-87.
Mitchell JA, McCray AT, Bodenreider O. From Phenotype to Genotype: Issues in Navigating the Available Information Resources. 
Methods Inf Med. 2003;42(5):557-63.
Zhang S, Bodenreider O. Knowledge Augmentation for Aligning Ontologies: An Evaluation in the Biomedical Domain. 
Proceedings of the Semantic Integration Workshop at the Second International Semantic Web Conference. 2003: 109-114.
Bodenreider O. The Unified Medical Language System (UMLS): Integrating Biomedical Terminology. 
Nucleic Acids Res; Database Issue. 2004;32: 267-70.
Zhang S, Bodenreider O. Investigating Implicit Knowledge in Ontologies with Application to the Anatomical Domain. 
Altman RB, Dunker AK, Hunter L, Jung TA, Klein TE, editors. Pacific Symposium on Biocomputing 2004: World Scientific. 2004;: 250-261.
McDonald CJ, Overhage JM, Mamlin BW, Dexter PD, Tierney WM. Physicians, information technology, and health care systems: a journey, not a destination [Letter]. 
J Am Med Inform Assoc. 2004 Mar-Apr;11(2):121-4.
Murray MD, Harris LE, Overhage JM, Zhou XH, Eckert GJ, Smith FE, Buchanan NN, Wolinsky FD, McDonald CJ, Tierney WM. Failure of computerized treatment suggestions to improve health outcomes of outpatients with uncomplicated hypertension: results of a randomized controlled trial. 
Pharmacotherapy. 2004 Mar;24(3):324-37.
Ackerman MJ. Computer Briefs: Wireless Networking - 802.11?. 
J Med Pract Manage. 2004 Jan-Feb;19(4):198-9.
Fletcher A, Yoo TS. Toward Public Volume Database Management: A Case Study of NOVA: The National Online Volumetric Archive. 
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Aronson AR, Mork JG, Gay CW, Humphrey SM, Rogers W. The NLM Indexing Initiative's Medical Text Indexer. 
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Hole WT, Carlsen BA, Tuttle MS, Srinivasan S, Lipow SS, Olson NE, Sheretz DD, Humphreys BL. Achieving "source transparency" in the UMLS Metathesaurus. 
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Leroy G, Rindflesch TC, Libbus B, Kilicoglu H, Chen H. A Syntactic Parser with Semantic Filtering for Biomedical Text. . 
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Azuaje FJ, Bodenreider O, Wang H, Dopazo J. Gene Ontology-Driven Similarity for Gene Expression Correlation Analysis. 
Proceedings of the second conference on Standards and Ontologies for Functional Genomics (SOFG 2) 2004:47.
Bodenreider O, Smith, Burugn A. The Ontology-Epistemology Divide: A Case Study in Medical Terminology. 
Proceedings of the Third International Conference on Formal Ontology in Information Systems (FOIS2004): IOS Press; 2004. p. 185-195.
Wang H, Azuaje F, Bodenreider O, Dopazo J. Gene Expression Correlation and Gene Ontology-Based Similarity: An Assessment of Quantitative Relationships. 
Proceedings of the 2004 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB'2004) 2004:25-31.
Bodenreider O, Azuaje F. Incorporating Ontology-Driven Similarity Knowledge Into Functional Genomics: An Exploratory Study. 
Proceedings of the 2004 IEEE Fourth Symposium on Bioinformatics and Bioengineering (BIBE-2004) 2004:317-324.
Fontelo P, Ackerman MJ, Kim G. Development of evidence-based medicine resources: Bridging clinical research to medical practice. 
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Kim KM, Park JJ, Song MH, Kim I, Suen CY. Detection of ridges and ravines using fuzzy logic operations. 
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Kingsland LC III, Prettyman MF, Shooshan SE. The NLM Gateway: a metasearch engine for disparate resources. 
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Grannis SJ, Overhage JM, McDonald CJ. Real world performance of approximate string comparators for use in patient matching. 
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Tierney VM, Overhage JM, Murray MD, Harris LE, Zhou XH, Eckert GJ, Smith FE, Nienaber N, McDonald CJ, Wolinsky FD. Effects of computerized guidelines for managing heart disease in primary care. 
J Gen Intern Med. 2003 Dec;18(12):967-76.
Mitchell JA, Aronson AR, Mork JG, Folk LC, Humphrey SM, Ward JM. Gene Indexing: Characterization and Analysis of NLM's GeneRIFs. 
AMIA Annu Symp Proc. 2003:460-4.
Mitchell JA, McCray AT. The Genetics Home Reference: A New NLM Consumer Health Resource. 
AMIA Annu Symp Proc. 2003:936
Rindflesch TC, Libbus B, Hristovski D, Aronson AR, Kilicoglu H. Semantic Relations Asserting the Etiology of Genetic Diseases. 
AMIA Annu Symp Proc. 2003:554-8.
Kashyap V. The UMLS Semantic Network and the Semantic Web. 
AMIA Annu Symp Proc. 2003:351-5.
Kashyap V, Ramakrishan C, Rindflesch TC. Towards Semi-Automatic Generation of Biomedical Ontologies. 
AMIA Annu Symp Proc. 2003 Nov;:886.
Zhang S, Bodenreider O. Aligning Representations of Anatomy Using Lexical and Structural Methods. 
AMIA Annu Symp Proc. 2003 Nov;:753-757.
Browne AC, Divita Guy, Aronson AR, McCray AT. Language and Vocabulary Tools. 
AMIA Annu Symp Proc. 2003:798.
Bangalore A, Thorn KE, Tilley C, Peters L. The UMLS knowledge source server: an object model for delivering UMLS data. 
AMIA Annu Symp Proc. 2003 Nov;:51-55.
Bodenreider O, Mitchell JA. Graphical Visualization and Navigation of Genetic Disease Information. 
AMIA Annu Symp Proc. 2003:792.
Fiszman M, Rindflesch TC, Kilicoglu H. Integrating a Hypernymic Proposition Interpreter into a Semantic Processor for Biomedical Texts. 
AMIA Annu Symp Proc. 2003:239-43.
Fiszman M, Rindflesch TC, Kilicoglu H. Interpreting Hypernymic Propositions in an Online Medical Encyclopedia. 
AMIA Annu Symp Proc. 2003:840.
McKnight L, Srinivasan P. Categorization of sentence types in medical abstracts. 
AMIA Annu Symp Proc. 2003:440-4.
McCray AT, Tse T. Search Failures in Consumer Health Information Systems. 
AMIA Annu Symp Proc. 2003:430-4.
Ackerman MJ, Yoo T. The Visible Human Data Sets (VHD) and Insight Toolkit (ITk): experiments in open source software. 
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Grannis SJ, Overhage JM, Hui S, McDonald CJ. Analysis of a probabilistic record linkage technique without human review. 
AMIA Annu Symp Proc. 2003:259-63.
Biondich PG, Anand V, Downd SM, McDonald CJ. Using adaptive turnaround documents to electronically acquire structured data in clinical settings. 
AMIA Annu Symp Proc. 2003:86-90.
Mamlin BW, Heinze DT, McDonald CJ. Automated extraction and normalization of findings from cancer-related free-text radiology reports. 
AMIA Annu Symp Proc. 2003:420-4.
Weiner M, Schadow G, Lindbergh D, Warvel J, Abernathy G, Perkins SM, Fyffe J, Dexter PR, McDonald CJ. Clinicians' and patients' experiences and satisfaction with unscheduled, nighttime, Internet-based video conferencing for assessing acute medical problems in a nursing facility. 
AMIA Annu Symp Proc. 2003:709-13.
Schadow G, McDonald CJ. Extracting structured information from free text pathology reports. 
AMIA Annu Symp Proc. 2003:584-8.
Ackerman MJ. Computer Briefs: The Wireless Internet. 
J Med Pract Manage. 2003 Sep-Oct;19(2):95-6.
Yoo TS. Toward Validation Databases for Medical Imaging: Engineering a Scientific Rendezvous. 
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Ammenwerth E, Wolff AC, Knaup P, Ulmer H, Skonetzki S, Van Bemmel JH, McCray AT, Haux R, Kulikowski C. Developing and Evaluating Criteria to Help Reviewers of Biomedical Informatics Manuscripts: A Case Report. 
J Am Med Inform Assoc. 2003 June.
Lederberg J, McCray AT. 'Ome Sweet 'Omics - A Genealogical Treasury of Words. 
Genealogical Treasury of Words. Scientist. 2001;15(7):8.
Antani S, Crandall D, Kasturi R. Robust Extraction of Text in Video. 
International Conference of Pattern Recognition. 2000 Sept.;1:1445-9.
Le DX, Straughan SR, Thoma GR. Greek Alphabet Recognition Technique for Biomedical Documents. 
Proc. 6th World Multiconference on Systemics, Cybernetics and Informatics, eds: Callaos N, et al. 2002 July;III: 86-91.
Bodenreider O, Burgun A. Characterizing the Definitions of Anatomical Concepts in WordNet and Specialized Sources. 
Proc. of the First Global WordNet Conference. 2002;:223-230.
Parascandola J. The Pharmaceutical Sciences in America, 1852-1902. 
Journal of the American Pharmaceutical Association. 2000;40 (2000): 733-735.
Shah H. Proteus: A Model for Clinical Protocols Created from Knowledge Components. 
Proc. 14th IEEE Symposium on Computer-Based Medical Systems: IEEE Computer Society. 2001 Jul;:59-64.
Antani S, Long LR, Thoma GR, Stanley RJ. Vertebra Shape Classification using MLP for Content-Based Image Retrieval. 
International Neural Networks Society and IEEE Neural Networks Society. 2003 July 2003;:160-65.
Bodenreider O, Burgun A, Rindflesch TC. Lexically-Suggested Hyponymic Relations Among Medical Terms and Their Representation in the UMLS. 
Proc. of TIA'2001; Terminology and Artificial Intelligence. 2001;:11-21.
Kanungo T, Mao S. Stochastic Language Model for Style-Directed Physical Layout. 
Analysis of Documents IEEE Transactions on Image Processing. 2003 May;12 (5)5:583-596.
Moore SR, Parascandola J. The Other Pharmacists in the American Civil War. 
Am J Health Syst Pharm. 2000 Jul 1;57(13):1276.
Tran LQ, Moon CW, Le DX, Thoma GR. Web Page Downloading and Classification. 
Proc. 14th IEEE Symposium on Computer-Based Medical Systems: IEEE Computer Society. 2001 Jul;:321-6.
Mao S, Kim J, Le DX, Thoma GR. Generating Robust Features for Style-Independent Labeling of Bibliographic Fields in Medical Journal Articles. 
Proc. 7th World Multiconference on Systemics, Cybernetics and Informatics.2003 July;III:53-6.
Kim J, Le DX, Thoma GR. Automated Labeling Algorithms for Biomedical Document Images. 
Proc. 7th World Multiconference on Systemics, Cybernetics and Informatics. 2003 July;V: 352-57.
Gandhi T, Kasturi R, Antani S. Application of Planar Motion Segmentation for Scene Text Extraction. 
Proc. of the 15th IEEE International Conference of Pattern Recognition. 2000 Sept.;1:1831-4.
Walker FL, Thoma GR. A SOAP-Enabled System for an Online Library Service. 
Proc. InfoToday 2002, Medford NJ: Information Today. 2002 May;:320-9.
Bodenreider O, Mitchell JA, McCray AT. Evaluation of the UMLS as a Terminology and Knowledge Resource for Biomedical Informatics. 
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Mao S, Kanungo T. Empirical Performance Evaluation Methodology and its Application to Page Segmentation Algorithms. 
IEEE Transactions on Pattern Analysis and Machine Intelligence. 2001 Mar;23(3): 242-256.
Long LR, Antani SK, Thoma GR. A Prototype Content-Based Image Retrieval System for Spine X-Rays. 
Proc. 16th IEEE Symposium on Computer-Based Medical Systems. 2003 June;: 156-62.
Burgun A, Bodenreider O. Comparing Terms, Concepts and Semantic Classes in WordNet and the Unified Medical Language System. 
Proc. of the NAACL'2001 Workshop; WordNet and Other Lexical Resources: Applications, Extensions and Customizations. 2001;:77-82.
McCray AT. Informatics Research, Development, and Training at the Lister Hill National Center for Biomedical Communications. 
In: Yearbook of Medical Informatics 03. Stuttgart: Schattauer Verlag; 2003. pp 193-203.
Parascandola J. John Mahoney and the Introduction of Penicillin to Treat Syphilis. 
Pharmacy in History. 2001; 43: 3-13.
Mao S, Kanungo T. Automatic Training of Page Segmentation Algorithms: An Optimization Approach. 
International Conference on Pattern Recognition. 2000 Sept.;:531-534.
Bodenreider O, Rindflesch TC, Burgun A. Unsupervised, Corpus-Based Method for Extending a Biomedical Terminology. 
Proc. of the ACL Workshop; Natural Language Processing in the Biomedical Domain. 2002;:53-60.
Griffenhagen GB, Brushwood D, Parascandola J, Schondelmeyer S. Trends and Events in American Pharmacy, 1852-2002. 
J Am Pharm Assoc (Wash). 2002 Sep-Oct;42(5 Suppl 1):S24-5.
Long LR, Thoma GR. Identification and Classification of Spine Vertebrae by Automated Methods. 
Proc. SPIE Medical Imaging: Image Processing. 2001 Feb;:1478-89.
Walker FL, Thoma GR. A SOAP-Based Tool for User Feedback and Analysis. 
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Burgun A, Bodenreider O. Aspects of the Taxonomic Relation in the Biomedical Domain. 
FOIS. 2001;: 222-233
McCray AT. An Upper Level Ontology for the Biomedical Domain. 
Comp Funct Genom. 2003;4:80-4.
Long LR, Thoma GR. Use of Shape Models to Search Digitized Spine X-Rays. 
IEEE Computer-Based Medical Systems. 2000 June;: 255-60.
Parascandola J. To Bond or Not to Bond: Chemical Versus Physical Theories of Drug Action. 
Bulletin for the History of Chemistry. 2003;28: 1-8.
Krainak DM, Long LR, Thoma GR. A Method of Content-Based Retrieval for a Spinal X-Ray Image Database. 
Proc. of SPIE Medical Imaging: PACS and Integrated Medical Systems. 2002 Feb;4685.
Parascandola J. From Germs to Genes: Trends in Drug Therapy, 1852-2002. 
Pharm Hist. 2002 ;44(1):3-11.
Ford G, Hauser SE, Le DX, Thoma GR. Pattern Matching Techniques for Correcting Low Confidence OCR Words in a Known Context. 
Proc. SPIE., Document Recognition and Retrieval VIII. 2001 Jan;4307:241-9.
Xu X, Lee DJ, Antani S, Long LR. Localizing Contour Points for Indexing an X-Ray Image Retrieval System. 
Los Alamitos, CA: IEEE Computer Society. 2003 June;: 169-74.
Stanley RJ, Long LR. A Radius of Curvature Approach to Cervical Spine Vertebra Image Analysis. 
Proc. 38th Annual Rocky Mountain Bioengineering Symposium, 37. 2001 Apr;: 385-90.
Walker FL, Thoma GR. Read it to Me!. 
Proc. 21st National Online Meeting. 2000 May;: 473-83.
Hole WT, Srinivasan S. Adding NeuroNames to the UMLS Metathesaurus. 
Neuroinformatics. 2003;1(1):61-3.
Long LR, Krainak DM, Thoma GR. Identifying Image Structures for Content-Based Retrieval of Digitized Spine X-Rays. 
Proc. of SPIE Medical Imaging: Image Processing. 2002 Feb; 4684.
McCray AT, Bodenreider O. A Conceptual Framework for the Biomedical Domain. 
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Long RL, Thoma GR. Segmentation and Image Navigation in Digitized Spine X-Rays. 
Proc. SPIE Medical Imaging: Image Processing. 2000 Feb; 3979: 168-79.
Hersh WJ, Velterop J, McCray AT, Eynsenbach G, Boguski M. Overcoming Impediments to Effective Health and Biomedical Digital Libraries, JCDL. 
JCDL. 2002;: 360.
Kim J, Le DX, Thoma GR. Automated Labeling in Document Images. 
Proc. SPIE, Document Recognition and Retrieval VIII. 2001 Jan;4307:111-22.
Le DX, Thoma GR. Automated Document Labeling for Web-Based Online Medical Journals. 
Proc. 7th World Multiconference on Systemics, Cybernetics and Informatics. 2003 July;II: 411-15.
Hauser SE, Le DX, Thoma GR. Automated Zone Correction in Bitmapped Document Images. 
SPIE: Document Recognition and Retrieval VII. 2000 Jan;3976: 248-58.
Parascandola J. Chaulmoogra Oil and the Treatment of Leprosy. 
Pharm Hist. 2003 ;45(2):47-57.
Thoma GR, Ford G. Automated Data Entry System: Performance Issues. 
Proc. SPIE: Document Recognition and Retrieval IX. 2002 Jan;4670: 181-90.
McCray AT, Browne AC, Bodenreider O. The Lexical Properties of the Gene Ontology (GO). 
Proc AMIA Symp. 2002;:504-8.
Ray J, Dale R, Moore R, Reich V, Underwood W, McCray AT. Panel on Digital Preservation, JCDL. 
Panel on Digital Preservation, JCDL. 2002;: 365-367.
Lasko TA, Hauser SE. Approximate String Matching Algorithms for Limited-Vocabulary OCR Output Correction. 
Proc. SPIE, Document Recognition and Retrieval VIII. 2001 Jan;4307:232-40.
Ford G, Thoma GR. Ground Truth Data for Document Image Analysis. 
Proceedings of 2003 Symposium on Document Image Understanding and Technology. 2003 April 9-11;: 199-205.
Rosemblat G, Gemoets D, Browne AC, Tse T. Machine Translation-Supported Cross Language Information Retrieval for a Consumer Health Resource. 
AMIA Annu Symp Proc. 2003:564-8.
Long LR, Thoma GR. Indexing of Image Content in Spine X-Rays. 
Proc. of SPIE Storage and Retrieval for Image and Video Databases VIII. 2000 Jan;3972:55-63.
Mitchell JA, McCray AT, Bodenreider O. From Phenotype to Genotype: Navigating the Available Information Resources. 
Proc AMIA Symp. 2002;:1109.
Humphrey S, Rindflesch TC, Aronson AR. Automatic Journal Descriptor Indexing Extended to Indexing by UMLS Semantic Type Using the Cosine Document Similarity Measure. 
Proc. of the 11th SIG/CR Classification Research Workshop. 2000;103-16.
Long LR, Thoma GR. Feature Indexing in a Database of Digitized X-Rays. 
Proc. of SPIE Storage and Retrieval for Media Databases. 2001 Jan;4315:393-403.
Hauser SE, Sabir TF, Thoma GR. OCR Correction Using Historical Relationships from Verified Text in Biomedical Citations. 
Proc. of 2003 Symposium on Document Image Understanding Technology. College Park MD: Institute for Advanced Computer Studies, University of Maryland. 2003 April;: 171-7.
Parascandola J. The Contributions of David L. Cowen. 
Publ Am Inst Hist Pharm. 2001;19:1-3.
Bodenreider O, Burgun A, Mitchell JA. Evaluation of WordNet as a Source of Lay Knowledge for Molecular Biology and Genetic Diseases: A Feasibility Study. 
Stud Health Technol Inform. 2003;95:379-84.
Mao S, Kanungo T. Empirical Performance Evaluation of Page Segmentation Algorithms. 
SPIE conference on Document Recognition and Retrieval. 2000 Jan.;:303-314.
Antani S, Kasturi R, Jain R. A Survey on the Use of Pattern Recognition Methods for Abstraction. 
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Bodenreider O. A Semantic Navigation Tool for the UMLS. 
AMIA Annu Symp Proc. 2000;: 971.
Srinivasan P, Mitchell JA, Bodenreider O, Pant G, Menczer F. Web Crawling Agents for Retrieving Biomedical Information. 
Proc. of the International Workshop on Bioinformatics and Multi-Agent Systems (BIXMAS). 2002 Jul.
Shin DW. Towards Efficient XML Query Processing, XML. 
Developer Day in XML 2000: Graphic Communications Association. 2000;:1-45.
Ebert DS, Morris CJ, Rheingans P, Yoo TS. Designing Effective Transfer Functions for Volume Rendering from Photographic Volumes. 
IEEE Transactions on Visualization and Computer Graphics. 2002;8(2):183-97.
Le DX, Tran LQ, Chow J, Kim J, Hauser SE, Moon CW, Thoma GR. Automated Medical Citation Records Creation for Web-Based Online Journals. 
Proc. 14th IEEE Symposium on Computer-Based Medical Systems: IEEE Computer Society. 2001.
Lee DJ, Antani S, Long LR. Similarity Measurement Using Polygon Curve Representation and Fourier Descriptors for Shape-Based Vertebral Image Retrieval. 
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Bodenreider O, Mitchell JA, McCray AT. Biomedical Ontologies. 
Pacific Symposium on Biocomputing: World Scientific. 2003;:562-564.
Walker FL, Thoma GR. Web-Based Document Image Processing. 
Proc. SPIE: Internet Imaging. 2000 Jan;:268-77.
Tezmol A, Sari-Sarraf H, Mitra S, Long R, Gururajan A. Customized Hough Transform for Robust Segmentation of Cervical Vertebrae from X-Ray Images. 
SSIAI. 2002;: 224-228.
McCray AT, Gallagher ME. Principles for Digital Library Development. 
Communications of the ACM. 2001 May; 44(5): 48-54.
Long LR, Antani S, Lee DJ, Krainak DM, Thoma GR. Biomedical Information from a National Collection of Spine X-Rays: Film to Content-Based Retrieval. 
Proc. of SPIE Medical Imaging: PACS and Integrated Medical Information Systems. 2003 Feb;5033: 70-84.
Bodenreider O, Pakhomov S. Exploring Adjectival Modification in Biomedical Discourse Across Two Genres. 
Proc. of the ACL, 2003 Workshop, Natural Language Processing in Biomedicine. 2003;:105-112.
Le DX, Thoma GR. Page Layout Classification Technique for Biomedical Documents. 
Proc. World Multiconference on Systems, Cybernetics and Informatics (SCI). 2000 Jul.;X: 348-52.
Bodenreider O, Zweigenbaum P. Strategies d'Identification des Noms Propres a Partir de Nomenclatures Medicales Paralleles. 
Traitement Automatique des Langues. 2000;41(3):727-757.
Zamora G, Sari-Sarraf H, Long LR. Hierarchical Segmentation of Vertebrae from X-ray Images. 
Proc. of SPIE Medical Imaging: Image Processing. 2003 Feb; 5032.
Cantor MN, SI N, Hartel F, Bodenreider O, Lussier YA. An Evaluation of Hybrid Methods for Matching Biomedical Terminologies: Mapping the Gene Ontology to the UMLS. 
Stud Health Technol Inform. 2003;:62-67.
Parascandola J. Public Health Service, Militarization of the PHS Commissioned Corps. 
Militarization of the PHS Commissioned Corps. 2001 Sept.
Rindflesch TC, Rajan J, Hunter L. Extracting Molecular Binding Relationships from Biomedical Text. 
Proc. of the 6th Applied Natural Language Processing Conference. 2000;: 188-95.
Xiaocheng L, Prettyman M, Antonucci R. System Expansion and Integration with Agents in HSTAT. 
Proc. of the World Multiconference on Systemics, Cybernetics, and Informatics. 2000 Jul.
Zamora G, Sari-Sarraf H, Mitra S, Long LR. Estimation of Orientation and Position of Cervical Vertebrae for Segmentation with Active Shape Models. 
Proc. SPIE Medical Imaging: Image Processing. 2001 Feb;4322:378-87.
Antani S, Long LR, Lee DJ, Thoma GR. Evaluation of Shape Indexing Methods for Content-Based Retrieval of X-Ray Images. 
Proceedings of IS&T/SPIE Electronic Imaging Science and Technology, Storage and Retrieval for Media Databases. 2003 Jan; 5021: 405-16.
Antani S, Long LR, Thoma GR. A Biomedical Information System for Combined Content-Based Retrieval of Spine X-ray Images and Associated Text Information. 
3rd Indian Conference on Computer Vision, Graphics, and Image Processing. 2002 Dec.
Jacquelinet C, Bodenreider O, Burgun A. Modelling Syllepse in Medical Knowledge Bases with Application in the Domain of Organ Failure and Transplantation. 
Proc. of OntoLex; Workshop on Ontologies and Lexical Knowledge Bases 2000.
Mao S, Kanungo T. Stochastic Language Models for Automatic Acquisition of Lexicons from Printed Bilingual Dictionaries. 
Document Layout Interpretation and Its Application. 2001.
Kim J, Le DX, Thoma GR. Automated Labeling of Bibliographic Data Extracted from Biomedical Online Journals. 
Proc. SPIE Electronic Imaging. 2003 Jan;5010: 47-56.
Mao S, Kanungo T. Software Architecture of PSET: A Page Segmentation Evaluation Toolkit. 
International Journal on Document Analysis and Recognition. 2002 Mar;4(3):205-217.
Rindflesch TC, Aronson AR. Semantic Processing for Enhanced Access to Biomedical Knowledge. 
Real World Semantic Web Applications, IOS Press. 2002;:157-72.
Long LR, Thoma GR. Computer-Assisted Retrieval of Biomedical Image Features from Spine X-Rays: Progress and Prospects. 
Proceeding of the 14th IEEE Symposium on Computer-Based Medical Systems (CBMS). 2001 Jul;:46-50.
Mao S, Rosenfeld A, Kanungo T. Document Structure Analysis Algorithms: A Literature Survey. 
Proc. SPIE Electronic Imaging. 2003 Jan;5010:197-207.
Thoma GR, Ford G, Le DX, Li Z. Text Verification in an Automated System for the Extraction of Bibliographic Data. 
Proc. 5th International Workshop on Document Analysis Systems, Springer-Verlag: Berlin. 2002 Aug;: 423-32.
Bodenreider O. Experiences in Visualizing and Navigating Biomedical Ontologies and Knowledge Bases. 
Proc. of the ISMB'SIG meeting; Bio-ontologies. 2002;:29-32.
Pearson G, Moon CW. Bridging Two Biomedical Journal Databases with XML - A Case Study. 
Proc. 14th IEEE Symposium on Computer-Based Medical Systems: IEEE Computer Society. 2001 Jul;:309-14.
Zamora G, Sari-Sarraf H, Mitra S, Long R. Analysis of the Feasibility of Using Active Shape Models for Segmentation of Gray Scale Images. 
Proc. of SPIE Medical Imaging: Image Processing. 2002 Feb;4684:1370-81.
Crandall D, Antani S, Kasturi R. Extraction of Special Effects Caption Text Events from Digital Video. 
International Journal of Document Analysis and Recognition. 2003;5(2-3):138-57.
Rindflesch TC, Fiszman M, Kilicoglu H, Libbus B. Semantic Knowledge Representation Project: A Report to the Board of Scientific Counselors. 
September 2003 Technical Report to the LHNCBC Board of Scientific Counselors.
Brown AC, Divita G, Lu C, McCreedy L, Nace D. Lexical Systems: A Report to the Board of Scientific Counselors. 
September 2003 Technical Report to the LHNCBC Board of Scientific Counselors.
Weiner M, Callahan CM, Tierney WM, Overhage JM, Mamlin B, Dexter PR, McDonald CJ. Using information technology to improve the health care of older adults. 
Ann Intern Med. 2003 Sep 2;139(5 Pt 2):430-6.
Hristovski D, Peterlin B, Mitchell JA, Humphrey SM. Improving literature based discovery support by genetic knowledge integration. 
Stud Health Technol Inform. 2003;95:68-73.
Kayaalp M, Aronson AR, Humphrey SM, Ide NC, Tanabe LK, Smith LH, Demner-Fushman D, Loane RF, Mork JG, Bodenreider O. Methods for accurate retrieval of MEDLINE citations in functional genomics. 
The Twelfth Text Retrieval Conference (TREC 2003). 2003:441-50.
Weiner M, Stump TE, Callahan CM, Lewis JN, McDonald CJ. A practical method of linking data from Medicare claims and a comprehensive electronic medical records system. 
Int J Med Inform. 2003 Aug;71(1):57-69.
Murray MD, Smith FE, Fox J, Teal EY, Kesterson JG, Stiffler TA, Ambuehl RJ, Wang J, Dibble M, Benge DO, Betley LJ, Tierney WM, McDonald CJ. Structure, functions, and activities of a research support informatics section. 
J Am Med Inform Assoc. 2003 Jul-Aug;10(4):389-98. Epub 2003 Mar 28.
Fontelo P, Ackerman MJ, Kim G, Locatis C. The PDA as a Portal to Knowledge Sources in a Wireless Setting. 
Telemed J E Health. 2003 Jun;9(2):141-7. DOI: 10.1089/153056203766437480.
Ackerman MJ. Computer Briefs: Laptop or Desktop?. 
J Med Pract Manage. 2003 May-Jun;18(6):309-10.
Weeber M, Vos R, Klein H, De Jong-Van Den Berg LT, Aronson AR, Molema G. Generating Hypotheses by Discovering Implicit Associations in the Literature: A Case Report of a Search for New Potential Therapeutic Uses for Thalidomide. 
J Am Med Inform Assoc. 2003 May-Jun;10(3):252-9. Epub 2003 Jan 28.
Thoma GR. Anatomic Images for the Public. 
May 2003 Technical Report to the LHNCBC Board of Scientific Counselors.
Yoo TS. 3D Informatics: Research Program in High Performance Computing. 
Technical Report to the LHNCBC Board of Scientific Counselors; 2003 May. 42 pages.
Locatis C, Fontelo P, Sneiderman C, Ackerman MJ, Uijtdehaage S, Candler C, Stensaas S, Dennis S. Webcasting videoconferences over IP: a synchronous communication experiment. 
J Am Med Inform Assoc. 2003 Mar-Apr;10(2):150-3. DOI: 10.1197/jamia.M1170.
Bodenreider O, Burgun A, Rindflesch TC. Assessing the Consistency of a Biomedical Terminology Through Lexical Knowledge. 
Int J Med Inf. 2002 Dec 4;67(1-3):85-95.
McDonald CJ, Huff SM, Suico JG, Hill G, Leavelle D, Aller R, Forrey A, Mercer K, DeMoor G, Hook J, Williams W, Case J, Maloney P. LOINC, a universal standard for identifying laboratory observations: a 5-year update. 
Clin Chem. 2003 Apr;49(4):624-33.
Burgun A, Bodenreider O, Le Duff F, Moussouni F, Loreal O. Representation of roles in biomedical ontologies: a case study in functional genomics. 
Proc AMIA Symp. 2002:86-90.
Sarkar IN, Rindflesch TC. Discovering Protein Similarity Using Natural Language Processing. 
Proc AMIA Symp. 2002:677-81.
Libbus B, Rindflesch TC. NLP-Based Information Extraction for Managing the Molecular Biology Literature. 
Proc AMIA Symp. 2002:445-9.
Srinivasan P, Rindflesch T. Exploring Text Mining from MEDLINE. 
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Srinivasan S, Rindflesch TC, Hole WT, Aronson AR, Mork JG. Finding UMLS Metathesaurus Concepts in MEDLINE. 
Proc AMIA Symp. 2002:727-31.
Liu H, Aronson AR, Friedman C. A Study of Abbreviations in MEDLINE Abstracts. 
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Leiman D, Twose C, Lee TY, Fletcher A, Yoo T. Rendering an Archive in Three Dimensions. 
In: Galloway RL Jr, editor. Proceedings of SPIE Medical Imaging 2003: Visualization, Image-Guided Procedures, and Display; 2003 Feb 16-21; San Diego;5029:9 pages. SPIE; 2003 May 30. DOI: 10.1117/12.480210.
Ratiu P, Hillen B, Glaser J, Jenkins DB. Visible Human 2.0 - The Next Generation. 
In: Westwood JD, Hoffman HM, Mogel GT, Phillips R, Robb RA, Stredney D, editors. Stud Health Technol Inform [Studies in Health Technology and Informatics] - Proceedings of the 11th annual Medicine Meets Virtual Reality conference; 2003 Jan;94:275-81. Amsterdam: IOS Press.
Hauser SE, Schlaifer J, Sabir TF, Demner-Fushman D, Thoma GR. Correcting OCR Text by Association with Historic Datasets. 
Proc. SPIE Electronic Imaging. 2003 Jan;5010: 84-93.
McDonald CJ, Shadow G, Barnes M, Dexter P, Overhage M, Mamlin B, McCoy J. Open source software in medical informatics—why, how and what. 
Int J Med Inform 2003 vol: 69 (2-3) pp: 175-184.
Ackerman MJ. The Visible Human Project Moves from Data to Knowledge. 
Lékař a technika. 2002;33(1):4-12.
Powell T, Srinivasan S, Nelson SJ, Hole WT, Roth L, Olenichev V. Tracking meaning over time in the UMLS Metathesaurus. 
Proc AMIA Symp. 2002:622-6.
Nelson SJ, Brown SH, Erlbaum MS, Olson N, Powell T, Carlsen B, Carter J, Tuttle MS, Hole WT. A semantic normal form for clinical drugs in the UMLS: early experiences with the VANDF. 
Proc AMIA Symp. 2002:557-61.
Locatis C, Fontelo P, Ackerman MJ, Sneiderman C. Feasibility Studies in IP Videoconferencing, Streaming, and Wireless Communication. 
AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2002 Nov 9-13; San Antonio, Texas. p. 1090.
Grannis SJ, Overhage JM, McDonald CJ. Analysis of identifier performance using a deterministic linkage algorithm. 
Proc AMIA Symp. 2002:305-9.
Thomas SM, Mamlin B, Schadow G, McDonald CJ. A successful technique for removing names in pathology reports using an augmented search and replace method. 
Proc AMIA Symp. 2002:777-81.
Weiner M, Schadow G, Lindbergh D, Warvel J, Abernathy G, Perkins SM, Dexter PR, McDonald CJ. Conducting a study of Internet-based video conferencing for assessing acute medical problems in a nursing facility. 
Proc AMIA Symp. 2002:874-8.
Biondich PG, Overhage JM, Dexter PR, Downs SM, Lemmon L, McDonald CJ. A modern optical character recognition system in a real world clinical setting: some accuracy and feasibility observations. 
Proc AMIA Symp. 2002:56-60.
Buchanan BG, Chapman W, Cooper GF, Hanbury P, Kayaalp M, Ramachandran M, Saul M. Creating a Software Tool for the Clinical Researcher - the IPS System. 
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Lowekamp B, Rheingans P, Yoo TS. Exploring Surface Characteristics with Interactive Gaussian Images (A Case Study). 
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Ackerman MJ. Computer Briefs: Last Mile Broadband: Trials and Tribulations of Implementing the Plan. 
J Med Pract Manage. 2002 Sep-Oct;18(2):107-8.
Ackerman MJ. Visible Human Project: From Data to Knowledge. 
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Weinberger M, Murray MD, Marrero DG, Brewer N, Lykens M, Harris LE, Seshadri R, Caffrey H, Roesner JF, Smith F, Newell AJ, Collins JC, McDonald CJ, Tierney WM. Effectiveness of pharmacist care for patients with reactive airways disease: a randomized controlled trial. 
JAMA. 2002 Oct 2;288(13):1594-602.
Long LR, Thoma GR. Landmarking and Feature Localization in Spine X-Rays. 
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Kim I, Chien SI. Speed-up of error backpropagation algorithm with class-selective relevance. 
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Tse T, Johnson SO, Ripple AM. Update: Expanded ClinicalTrials.gov search capabilities. 
NLM Tech Bull. 2002 Jul-Aug;(327):e5.
Ackerman MJ. Computer Briefs: Going the Last Mile. 
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Ackerman MJ, Craft R, Ferrante F, Kratz M, Mandil S, Sapci H. Telemedicine/telehealth: an international perspective. Telemedicine technology. 
Telemed J E-Health. 2002 Spring;8(1):71-8.
Burgun A, Bodenreider O. Mapping the UMLS Semantic Network into General Ontologies. 
Proc AMIA Symp. 2001:81-5.
McCray AT, Bodenreider O, Malley JD, Browne AC. Evaluating UMLS Strings for Natural Language Processing. 
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Kim W, Aronson AR, Wilbur WJ. Automatic MeSH Term Assignment and Quality Assessment. 
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Nishinaga N, Tatsumi H, Gill M, Akashib A, Nogawa H, Reategui I. Trans-Pacific Demonstration of Visible Human. 
Space Communications. 2002 March; 17(4):303-311.
Ackerman MJ. Computer Briefs: DSL and Other Last Mile Solutions. 
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Yoo T, Ackerman MJ, Lorensen W, Schroeder W, Chalana V, Aylward S, Metaxas D, Whitaker R. Engineering and Algorithm Design for an Image Processing API: A Technical Report on ITK - The Insight Toolkit. 
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McCray AT, Burgun A, Bodenreider O. Aggregating UMLS Semantic Types for Reducing Conceptual Complexity. 
Medinfo. 2001 ;10(Pt 1):216-20.
Bodenreider O. An Object-Oriented Model for Representing Semantic Locality in the UMLS. 
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Schadow G, Grannis S, McDonald CJ. Privacy-Preserving Distributed Queries for a Clinical Case Research Network. 
IEEE International Conference on Data Mining Workshop on Privacy, Security, and Data Mining City: Maebashi City, Japan 2002 vol: 14 pp: 55-65.
Overhage JM, Dexter PR, Perkins SM, Cordell WH, McGoff J, McGrath R, McDonald CJ. A randomized, controlled trial of clinical information shared from another institution. 
Ann Emerg Med. 2002 Jan;39(1):14-23.
Locatis CN. Instructional design and technology in healthcare. 
Chapter 17 in: Reiser RA, Dempsey JV, editors. Trends and Issues in Instructional Design and Technology. Upper Saddle River, New Jersey: Merrill Prentice Hall; 2002 Jan 1.
Locatis C. Educational Technology and Instructional Development in Health Care. 
In: Reiser RA, Dempsey JV, editors. Trends and Issues in Instructional Design and Technology. Upper Saddle River, New Jersey: Merrill/Prentice Hall; 2002 Jan 1. p. 225-38.
Locatis C. Design Considerations for Multimedia Programs. 
Chapter 18 in: Medsker K, Holdsworth KM, editors. Models and Strategies for Training Design. Silver Spring, Maryland: International Society for Performance Improvement; 2001. p. 355-73.
Morris J, Yoo TS, Chen D, Burgess J, Richardson AC. Computer Assisted Pedicle Screw Trajectory Guidance Using Fused Deposition Modeling. 
Abstract in Computer Assisted Surgery. 2001.
Fraser L, Locatis C. Effects of Link Annotations on Search Performance in Layered and Unlayered Hierarchically Organized Information Spaces. 
Journal of the American Society for Information Science and Technology. 2001;52(14):1255-61.
Rodgers RPC, Sherwin Z. A Management System for Network Sharable Locally Installed Software: Merging RPM and the Depot Scheme under Solaris. 
LISA XV: Proceedings of the Fifteenth Systems Administration Conference. 2001 Dec;: 267-272.
Schadow G, Russler DC, McDonald CJ. Conceptual alignment of electronic health record data with guideline and workflow knowledge. 
Int J Med Inform. 2001 Dec;64(2-3):259-74.
Bodenreider O, Zweigenbaum P. Identifying Proper Names in Parallel Medical Terminologies. 
Stud Health Technol Inform. 2000;77:443-7
Schadow G, Barnes MR, McDonald CJ. Representing and querying conceptual graphs with relational database management systems is possible. 
Proc AMIA Symp. 2001:598-602.
Overhage JM, Aisen A, Barnes M, Tucker M, McDonald CJ. Integration of radiographic images with an electronic medical record. 
Proc AMIA Symp. 2001:513-7.
Kroth PJ, Belsito A, Overhage JM, McDonald CJ. Bedside vital signs capture for the non-ICU setting-an open source, PC-based solution. 
Proc AMIA Symp. 2001:344-8.
Thomas SM, Overhage JM, Warvel J, McDonald CJ. A comparison of a printed patient summary document with its electronic equivalent: early results. 
Proc AMIA Symp. 2001:701-5.
Weiner M, Schadow G, Lindbergh D, Warvel J, Abernathy G, Dexter P, McDonald CJ. Secure Internet video conferencing for assessing acute medical problems in a nursing facility. 
Proc AMIA Symp. 2001:751-5.
Overhage JM, Suico J, McDonald CJ. Electronic laboratory reporting: barriers, solutions and findings. 
J Public Health Manag Pract. 2001 Nov;7(6):60-6.
Cooper GF, Buchanan BG, Chapman W, Hanbury P, Kayaalp M, Saul M. IPS: A System That Uses Machine Learning to Help Locate Patient Records for Clinical Research. 
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Humphrey SM, Rindflesch TC, Aronson AR. Automatic Indexing by Discipline and High-Level Categories: Methodology and Potential Applications. 
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Ackerman MJ. Computer Briefs: POTS and Other Channels. 
J Med Pract Manage. 2001 Sep-Oct;17(2):112-3.
Yoo TS, Machiraju R, editors. From Transfer Functions to Level Sets: Advanced Topics in Volume Image Processing. 
Tutorial Notes for IEEE Visualization 2001; 2001 Oct 21-26; San Diego. 100 pages.
Yoo TS, Morris J, Chen DT, Burgess J, Richardson AC. Template Guided Intervention: Interactive Visualization and Design for Medical Fused Deposition Models. 
In: Niessen WJ, Viergever MA, editors. Proceedings of the Fourth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI); 2001 Oct 14-17; Utrecht, The Netherlands. Lecture Notes in Computer Science 2208. Springer; 2001. p. 45-8.
Yoo TS, Subramanian KR. Implicit Snakes: Active Constrained Implicit Models. 
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McDonald CJ. Is the placebo powerless? [Letter]. 
N Engl J Med. 2001 Oct 25;345(17):1276-7; author reply 1278-9.
Kratz M, Ackerman MJ, Hanss T, Corbato S. NGI and Internet2: Accelerating the Creation of Tomorrow's Internet. 
In: Patel VL, Rogers R, Haux R, editors. Stud Health Technol Inform [Studies in Health Technology and Informatics] – MEDINFO 2001: Proceedings of the 10th World Congress on Medical Informatics (2001 Sep 2-5; London);84(Part I):28-32. Amsterdam: IOS Press.
Ackerman MJ, Yoo T, Jenkins D. From Data to Knowledge - The Visible Human Project Continues. 
In: Patel VL, Rogers R, Haux R, editors. Stud Health Technol Inform [Studies in Health Technology and Informatics] – MEDINFO 2001: Proceedings of the 10th World Congress on Medical Informatics (2001 Sep 2-5; London);84(Part II):887-90. Amsterdam: IOS Press.
Kim I, Chien SI. Analysis of 3D hand trajectory gestures using stroke-based composite hidden Markov models. 
Applied Intelligence. 2001 Sept/Oct;15(2):131-43.
McDonald CJ, Schadow G, Suico J, Overhage JM. Data standards in health care. 
Ann Emerg Med. 2001 Sep;38(3):303-11.
Dexter PR, Perkins S, Overhage JM, Maharry K, Kohler RB, McDonald CJ. A computerized reminder system to increase the use of preventive care for hospitalized patients. 
N Engl J Med. 2001 Sep 27;345(13):965-70.
Marcelo AB, Fontelo P. Web-based Health Applications on Handheld Devices. 
Arch Pathol Lab Med. 2001 Aug;125(8):1015.
Marcelo AB, Fontelo P. A Pathology Report Metadata Registry: Framework for Semantic Interoperability Across Disparate Systems. 
Arch Pathol Lab Med. 2001 Aug;125(8):1014-1015.
Weeber M, Mork JG, Aronson AR. Developing a Test Collection for Biomedical Word Sense Disambiguation. 
Proc AMIA Symp. 2001:746-50.
Yoo TS, Machiraju R, editors. Image Processing for Volume Graphics. 
Tutorial Notes for ACM SIGGRAPH 2001; 2001 Aug 12-17; Los Angeles. 333 pages.
Kim I, Kim DS, Chien SI. Selective attention based speed-up of error backpropagation algorithm: Application to speaker adaptation. 
Proc. IASTED Int'l Conf. Signal and Image Processing, pp. 231-235, Hawaii, Aug. 2001.
Cheung NT, Fung K, Wong KC, Cheung A, Cheung J, Ho W, Cheung C, Shung E, Fung V, Fung H. Medical Informatics-the State of the Art In the Hospital Authority. 
Int J Med Inform. July 2001;62(2-3):113-9.
Overhage JM, Perkins S, Tierney WM, McDonald CJ. Controlled trial of direct physician order entry: effects on physicians' time utilization in ambulatory primary care internal medicine practices. 
J Am Med Inform Assoc. 2001 Jul-Aug;8(4):361-71.
Morse B, Yoo TS, Rheingans P, Chen DT, Subramanian KR. Interpolating Implicit Surfaces From Scattered Surface Data Using Compactly Supported Radial Basis Functions. 
In: Werner R, editor. Proceedings of the SMI 2001 International Conference on Shape Modeling and Applications; 2001 May 7-11; Genova, Italy. Los Alamitos, California: IEEE Computer Society Press; 2001. p. 89-98.
Yoo TS, Morse B, Subramanian KR, Rheingans P, Ackerman MJ. Anatomical Modeling from Unstructured Samples Using Variational Implicit Surfaces. 
In: Westwood JD, Hoffman HM, Mogel GT, Stredney D, Robb RA, editors. Stud Health Technol Inform [Studies in Health Technology and Informatics] - Proceedings of Medicine Meets Virtual Reality 2001;81:594-600. Amsterdam: IOS Press.
Bodenreider O, Bean CA. Relationships Among Knowledge Structures: Vocabulary Integration Within a Subject Domain. 
In: Bean A, Green R, editors. Relationships in the organization of knowledge. Springer; 2001. pp. 81-98.
McCray AT, Dorfman E, Ripple A, Ide NC, Jha M, Katz DG, Loane RF, Tse T. Usability Issues in Developing a Web-Based Consumer Health Site. 
Proc AMIA Symp. 2000:556-60.
Bodenreider O. Using UMLS semantics for classification purposes. 
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Weeber M, Klein H, Aronson AR, Mork JG, de Jong-van den Berg LT, Vos R. Text-Based Discovery in Biomedicine: The Architecture of the DAD-System. 
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Hole WT, Srinivasan S. Discovering Missed Synonymy in a Large Concept-Orientated Methathesaurus. 
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Oh HH, Kim IC, Chien SI. Experiments on various visual speech features for Korean vowel lipreading. 
Proc. IASTED Int'l Conf. Signal and Image Processing, pp. 225-230, Hawaii, Aug. 2001.
Ackerman MJ, Banvard RA, guest editors. Computerized Medical Imaging and Graphics;24(3). 
Elsevier; 2000.
Rindflesch TC, Tanabe L, Weinstein JN, Hunter L. EDGAR: extraction of drugs, genes and relations from the biomedical literature. 
Pac Symp Biocomput. 2000:517-28.
Kakadiaris IA, Chen D, Miller MJ, Loftin RB, Patrick C. Simulation-based determination of breast tissue engineering design patterns. 
Third Biennial Tissue Engineering Society International Meeting; 2000 Nov 30-Dec 3; Orlando, Florida.
Marcelo A, Fontelo P, Parolan M, Cualing H. Effect of Image Compression on Telepathology; A Randomized Clinical Trial. 
AMIA Annu Symp Proc; 2000 Nov 4-8; Los Angeles. p. 354-8.
Schadow G, Russler DC, Mead CN, McDonald CJ. Integrating medical information and knowledge in the HL7 RIM. 
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Kayaalp M, Cooper GF, Clemont G. Predicting ICU mortality: a comparison of stationary and nonstationary temporal models. 
Proc AMIA Symp. 2000:418-22.
McDonald CJ, Weiner M, Hui SL. How many deaths are due to medical errors? [Letter]. 
JAMA. 2000;284(17):2187. doi:10.1001/jama.284.17.2184
Aronson AR, Bodenreider O, Chang HF, Humphrey SM, Mork JG, Nelson SJ, Rindflesch TC, Wilbur WJ. The NLM Indexing Initiative. 
Proc AMIA Symp. 2000:17-21.
Ackerman MJ. Computer Briefs: Is 21st Century E-Health Care Really Self Care?. 
J Med Pract Manage. 2000 Sep-Oct;16(2):108-9.
Lin C, Loftin RB, Kakadiaris IA, Chen D, Su S. Interaction with Medical Volume Data on a Projection Workbench. 
10th International Conference on Artificial Reality and Telexistence (ICAT 2000); 2000 Oct 25-27; National Taiwan University, Taipei, Taiwan.
McCray AT. Better access to information about clinical trials. 
Ann Intern Med. 2000 Oct 17;133(8):609-14.
Yoo TS, Ackerman MJ, Vannier M. Toward a Common Validation Methodology for Segmentation and Registration Algorithms. 
In: Delp SL, DiGioia AM, Jaramaz B, editors. Proceedings of the Third International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI); 2000 Oct 11-14; Pittsburgh. Lecture Notes in Computer Science 1935. Berlin: Springer-Verlag; 2000. p. 422-31.
Chen D, Kakadiaris IA, Miller MJ, Loftin RB, Patrick C. Modeling for Plastic and Reconstructive Breast Surgery. 
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Yoo TS, Machiraju R, editors. Image Processing for Volume Graphics and Analysis. 
Tutorial Notes for IEEE Visualization 2000; 2000 Oct 8-13; Salt Lake City. 125 pages.
Lu CJ, Bangalore A, Tse T. Developing Web Browser Recording Tools Using Server-Side Programming Technology. 
Proc. of WebNet 2000, World conference on WWW and Internet: Association for the Advancement of Computing in Education. 2000;:372-7.
Weeber M, Vos R. Extracting the Lowest-Frequency Words: Pitfalls and Possibilities. 
Computational Linguistics. 2000;26(3):301-17.
Tse T. Searching ClinicalTrials.gov. 
NLM Tech Bull. 2000 Sep-Oct;(316):e1.
Fung V, Cheung NT, Chu YC, Chow YY, Tung Y, Wong KC, Fung KW, et al.. Statistical data collection as a by-product of clinical documentation. 
APAMI – MIC 2000 Conference. September 2000.
Kwok CK, Cheung NT, Fung KW, et al.. The electronic patient record in the hospital authority. 
APAMI – MIC 2000 Conference. September 2000.
Fan Y, Hwang K, Gill M, Huang HK. Some Connectivity and Security Issues of NGI in Medical Imaging Applications. 
Journal of High Speed Networks. 2000;9: 3-13.
McDonald CJ, Schadow G, Suico J, Heilmann K. Sprechen Sie LOINC. 
HL7 Mitteilugen, Germany. 2000. P 6-11.
Xiaocheng L, Prettyman M, Antonucci R. Agent-based system expansion and integration in HSTAT. 
Proceedings of the Fourth World Multiconference on Systemics, Cybernetics, and Informatics (SCI2000). July 2000.
McDonald CJ, Weiner M, Hui SL. Deaths due to medical errors are exaggerated in Institute of Medicine report. 
JAMA. 2000 Jul 5;284(1):93-5.
Ackerman MJ, Banvard RA. Imaging Outcomes from the National Library of Medicine's Visible Human Project. 
Comput Med Imaging Graph. 2000 May-Jun;24(3):125-6.
Ackerman MJ. Computer Briefs: Virtual Reality. 
J Med Pract Manage. 2000 May-Jun;15(6):304-5.
Ackerman MJ, Yoo T, Jenkins D. The Visible Human Project: From Data to Knowledge. 
In: Lemke HU, Vannier MW, Inamura K, Farman AG, Doi K, editors. Proceedings of the 14th International Congress and Exhibition of Computer Assisted Radiology and Surgery (CARS2000); 2000 Jun 28-Jul 1; San Francisco. Amsterdam: Elsevier; 2000 Jun 1. p. 11-6.
Kim I, Chien SI. Selectively attentive learning of multilayer perceptron for fast speaker adaptation. 
Proc. Int’l. Conf. Artificial Intelligence (ICAI'2000), vol.3, pp. 1259-1264, Las Vegas, June 2000.
Rodgers RP. Searching for biomedical information on the World Wide Web. 
J Med Pract Manage. 2000 May-Jun;15(6):306-13.
Ackerman MJ. Electronics and Health Care Revisited: Thirty-Eight Years Later. 
Proc IEEE. 2000;88(5):706-7. DOI: 10.1109/5.849172.
Ebert D, McClanahan T, Rheingans P, Yoo TS. Direct Volume Rendering from Photographic Data. 
In: deLeeuw W, van Liere R, editors. DataVisualization 2000: Proceedings of the Joint EUROGRAPHICS and IEEE TCVG [Technical Committee on Visualization and Graphics] Symposium on Visualization; 2000 May 29-30; Amsterdam, The Netherlands. Berlin: Springer-Verlag; 2000 May 19. p. 137-46.
McCray AT, Ide NC. Design and implementation of a national clinical trials registry. 
J Am Med Inform Assoc. 2000 May-Jun;7(3):313-23.
Ackerman MJ. Computer Briefs: Welcome to the New Millennium. 
J Med Pract Manage. 2000 Jan-Feb;15(4):211-2.
Yoo TS. Advances Toward Understanding of Multimodal Volume Data. 
Proceedings of High Care 2000: Innovations in Medicine; 2000 Feb 25-27; Ruhr University, Bochum, Germany.
Murray MD, Aguirre B, McDonald CJ. Inhaled Corticosteroids and adverse Gastrointestinal Effects. 
Pharmacoepidemiology and Drug Safety, 9: S1-S70 (2000).
Olesen H, Ibsen I, Bruunshuus I, Kenny D, Dybkaer R, Fuentes-Arderiu X, Hill G, Soares de Araujo P, McDonald CJ. Properties and Units in the Clinical Laboratory Sciences. Part X. 
Pure Appl Chem 2000 vol: 72 (5) pp: 889-962.
Schadow G, Russler DC, McDonald CJ. Conceptual integration of guidelines and workflow into the electronic health record. 
Stud Health Technol Inform. 2000;77:807-11.
Yoo TS, Ackerman MJ. A New Research Program in Medical Image Processing. 
In: Westwood JD, Hoffman HM, Mogel GT, Robb RA, Stredney D, editors. Stud Health Technol Inform [Studies in Health Technology and Informatics] - Proceedings of Medicine Meets Virtual Reality 2000;70:385-91. Amsterdam: IOS Press.
Aronis JM, Cooper GF, Kayaalp M, Buchanan BG. Identifying patient subgroups with simple Bayes'. 
Proc AMIA Symp. 1999:658-62.
Kroenke K, Stump T, Clark DO, Callahan CM, McDonald CJ. Symptoms in hospitalized patients: outcome and satisfaction with care. 
Am J Med. 1999 Nov;107(5):425-31.
Prettyman, M, Antonucci, R, Lynch P, Mericle L. Electronic Publication of Health Information in an Objected-Oriented Environment. 
Proceedings of the 62nd Annual Meeting of the American Society for Information Science. Washington, DC, October 1999.
McDonald CJ. Quality measures and electronic medical systems. 
JAMA. 1999 Sep 22-29;282(12):1181-2.
McDonald CJ, Overhage JM, Tierney WM, Dexter PR, Martin DK, Suico JG, Zafar A, Schadow G, Blevins L, Glazener T, Meeks-Johnson J, Lemmon L, Warvel J, Porterfield B, Cassidy P, Lindbergh D, Belsito A, Tucker M, Williams B, Wodniak C. The Regenstrief Medical Record System: a quarter century experience. 
Int J Med Inform. 1999 Jun;54(3):225-53.
Overhage J, Tierney W, McDonald CJ. Clinical Decision Support in Ambulatory Care Tools, Trials, and Tribulations. 
J Health Manag 1999 vol: 13 (2) pp: 67-79.
McCray AT, Gallagher ME, Flannick MA. Extending the role of metadata in a digital library system. 
In: Proceedings of the IEEE Forum on Research and Technology Advances in Digital Libraries, pp. 190-9, 1999.
Lingappa G, Thoma GR, Antani SK. Web Interface: MyMorph. 
Zafar A, Overhage JM, McDonald CJ. Continuous speech recognition for clinicians. 
J Am Med Inform Assoc. 1999 May-Jun;6(3):195-204.
Schadow G, McDonald CJ, Suico JG, Fohring U, Tolxdorff T. Units of measure in clinical information systems. 
J Am Med Inform Assoc. 1999 Mar-Apr;6(2):151-62.
Russler DC, Schadow G, Mead C, Snyder T, Quade LM, McDonald CJ. Influences of the Unified Service Action Model on the HL7 Reference Information Model. 
Proc AMIA Symp. 1999:930-4.
Clark DO, Kroenke K, Callahan CM, McDonald CJ. Validity and utility of patient-reported health measures on hospital admission. 
J Clin Epidemiol. 1999 Jan;52(1):65-71.
Davis D, Sager T, Senn S, Altman D, McDonald CJ. Claims for Glandular Supplements Still Unsubstantiated [LetterToEd]. 
J of Applied Nutrition 1999 vol: 51 pp: 3-4.
Cooper GF, Buchanan BG, Kayaalp M, Saul M, Vries JK. Using computer modeling to help identify patient subgroups in clinical data repositories. 
Proc AMIA Symp. 1998:180-4.
McDonald CJ, Overhage JM, Dexter PR, Blevins L, Meeks-Johnson J, Suico JG, Tucker MC, Schadow G. Canopy computing: using the Web in clinical practice. 
JAMA. 1998 Oct 21;280(15):1325-9.
Howe SE, executive editor. Networked Computing for the 21st Century: Supplement to the President's FY 1999 Budget. 
Subcommittee on Computing, Information, and Communications R&D; Committee on Technology; National Science and Technology Council.
Huff SM, Rocha RA, McDonald CJ, De Moor GJ, Fiers T, Bidgood WD Jr, Forrey AW, Francis WG, Tracy WR, Leavelle D, Stalling f, Griffin B, Maloney P, Leland D, Charles L, Hutchins K, Baenziger J. Development of the Logical Observation Identifier Names and Codes (LOINC) vocabulary. 
J Am Med Inform Assoc. 1998 May-Jun;5(3):276-92.
McDonald CJ, Overhage JM, Dexter P, Takesue B, Suico JG. What is done, what is needed and what is realistic to expect from medical informatics standards. 
Int J Med Inform. 1998 Feb;48(1-3):5-12.
McDonald CJ. Perspective: Need for Standards In Health Information. 
Health Aff (Millwood). 1998 Nov-Dec;17(6):44-6.
Howe SE, editor. High Performance Computing and Communications: Foundation for America's Information Future - Supplement to the President's FY 1996 Budget. 
Committee on Information and Communication, National Science and Technology Council.
Howe SE, editor. High Performance Computing & Communications: Technology for a National Information Infrastructure - Supplement to the President's Fiscal Year 1995 Budget. 
Committee on Information and Communication, National Science and Technology Council.
Howe SE, editor. High Performance Computing & Communications: Toward a National Information Infrastructure - The FY 1994 U.S. Research and Development Program. 
Committee on Physical, Mathematical, and Engineering Sciences; Federal Coordinating Council on Science, Engineering, and Technology; Office of Science and Technology Policy; Executive Office of the President.
McDonald CJ, Park BH, Blevins L. Grocers, Physicians, and Electronic Data Processing. . 
AMA Cont Med Ed Newsl. 1983;12:5-8.