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  • Caban JJ, Rheingans P, Yoo TS. An Evaluation of Visualization Techniques to Illustrate Statistical Deformation Models. Computer Graphics Forum. 2011 May-Jun;30(3):821-30. doi:10.1111/j.1467-8659.2011.01931.x.
  • Jaeger S, Antani S, Thoma GR. Tuberculosis Screening of Chest Radiographs. 2 June 2011, SPIE Newsroom. DOI: 10.1117/2.1201105.003732i.
  • Gururajan A, Kamalakannan S, Sari-Sharraf H, Shahriar M, Long LR, Antani SK. On the creation of a segmentation library for digitized cervical and lumbar spine radiographs. Comput Med Imaging Graph. 2011 Jun;35(4):251-65. doi: 10.1016/j.compmedimag.2010.11.006. Epub 2011 Mar 5.
  • Butan C, Hartnell LM, Fenton AK, Bliss D, Sockett RE, Subramaniam S, Milne JL. Spiral architecture of the nucleoid in Bdellovibrio bacteriovorus. J Bacteriol. 2011 Mar;193(6):1341-50. doi: 10.1128/JB.01061-10. Epub 2010 Dec 10.
  • Xue Z, Long LR, Antani SK, Neve L, Zhu Y, Thoma GR. A unified set of analysis tools for uterine cervix image segmentation. Comput Med Imaging Graph. 2010 Dec;34(8):593-604. doi: 10.1016/j.compmedimag.2010.04.002. Epub 2010 May 26.
  • Ducut E, Liu F, Avila JM, Encinas MA, Diwa M, Fontelo P. Virtual Microscopy in a Developing Country: A Collaborative Approach to Building an Image Library. Journal of eHealth Technology and Application. 2010 Sep;8(2):112-5.
  • Murphy GE, Lowekamp B, Zerfas PM, Chandler RJ, Narasimha R, Venditti CP, Subramaniam S. Ion-abrasion scanning electron microscopy reveals distorted liver mitochondrial morphology in murine methylmalonic acidemia. J Struct Biol. 2010 Aug;171(2):125-32. doi: 10.1016/j.jsb.2010.04.005. Epub 2010 Apr 23.
  • Kamalakannan S, Gururajan A, Sari-Sarraf H, Long LR, Antani SK. Double-edge detection of radiographic lumbar vertebrae images using pressurized open DGVF snakes. IEEE Trans Biomed Eng. 2010 Jun;57(6):1325-34. doi: 10.1109/TBME.2010.2040082. Epub 2010 Feb 17.
  • Qian X, Tagare HD, Fulbright RK, Long LR, Antani SK. Optimal embedding for shape indexing in medical image databases. Med Image Anal. 2010 Jun;14(3):243-54. doi: 10.1016/j.media.2010.01.001. Epub 2010 Jan 20.
  • Chen D, Chittajallu DR, Passalis G, Kakadiaris IA. Computational tools for quantitative breast morphometry based on 3D scans. Ann Biomed Eng. 2010 May;38(5):1703-18. doi: 10.1007/s10439-010-9971-z. Epub 2010 Mar 19.
  • Lowekamp B, Chen D. A Framework for Improved Regression Testing Based Upon CTest and CDash. The Insight Journal. Web. 2009 Jul-Dec.
  • Encinas MA, Ducut E, Liu F, Avila JM, Diwa M, Fontelo P. Development of a Virtual Slide Library in a Developing Country. AMIA Annu Symp Proc; 2009 Nov 14-18; San Francisco. p. 836.
  • Yoo TS, Silver D, Correa C, Chen D, Moran A. Volumetric Bodies - the Exhibition. IEEE VisWeek 2009 Interactive Demo & Art Exhibit; 2009 Oct 12-16; Atlantic City, New Jersey.
  • Bennett AE, Narayan K, Shi D, Hartnell LM, Gousset K, He H, Lowekamp BC, Yoo TS, Bliss D, Freed EO, Subramaniam S. Ion-abrasion scanning electron microscopy reveals surface-connected tubular conduits in HIV-infected macrophages. PLoS Pathog. 2009 Sep;5(9):e1000591. doi: 10.1371/journal.ppat.1000591. Epub 2009 Sep 25.
  • Xu X, Lee DJ, Antani SK, Long LR, Archiband JK. Using Relevance Feedback with Short-term Memory for Content-based Spine X-ray Image Retrieval. J Neurocomputing. June 2009;72(10-12):2259-69.
  • Lowekamp B. IO Streaming in ITK. Kitware Source. 2009 Apr;9:5-7.
  • Heymann JAW, Shi D, Kim S, Bliss D, Milne JLS, Subramaniam S. 3D imaging of mammalian cells with ion-abrasion scanning electron microscopy. J Struct Biol. 2009 Apr;166(1):1-7. doi: 10.1016/j.jsb.2008.11.005. Epub 2008 Dec 10.
  • Greenspan H, Gordon S, Zimmerman G, Lotenberg S, Jeronimo J, Antani S, Long LR. Automatic Detection of Anatomical Landmarks In Uterine Cervix Images IEEE Trans Med Imaging. 2009 Mar;28(3):454-68
  • Deserno TM, Long LR, Greenspan H. Content-based Image Retrieval: Major Challenges for Biomedical Applications Intl Journal of Healthcare Information Systems and Informatics. January 2009;4(1):i-iii
  • Long LR, Antani SK, Deserno TM, Thoma GR. Content-based Image Retrieval in Medicine: Retrospective Assessment, State of the Art, and Future Directions Int J Healthc Inf Syst Inform. 2009 Jan 1;4(1):1-16
  • Du H, Yoo TS, Qin H. PDE-based medial axis extraction and shape manipulation of arbitrary meshes. Journal of Systems Science and Complexity. 2008 Dec;21(4):601-17.
  • Jeronimo J, Wentzensen N, Long R, Schiffman M, Dunst ST, Allen RA, Walker JL, Gold MA, Zuna RE, Sherman ME, Wacholder S, Wang SS. Evaluation of Linear Array Human Papillomavirus Genotyping Using Automatic Optical Imaging Software J Clin Microbiol. 2008 Aug;46(8):2759-65. Epub 2008 Jun 11
  • Felts RL, Bennett A, Shi D, Freed E, Lifson J, Lowekamp B, Yoo TS, Bliss D, Subramaniam S. 3D Imaging of HIV transmission and entry using electron tomography and ion-abrasion scanning electron microscopy. Three Dimensional Electron Microscopy: Technical Advances and Recent Breakthroughs in 3DEM. Gordon Research Conference; 2008 Jun 15-20; Lucca (Barga), Italy.
  • Zhu Y, Huang X, Wang W, Lopresti D, Long LR, Antani SA, Xue Z, Thoma GR. Balancing the Role of Priors in Multi-Observer Segmentation Evaluation J Signal Process Syst. 2008 May 28;55(1-3):185-207
  • Goedert JJ, Scoppio BM, Pfeiffer R, Neve L, Federici AB, Long LR, Dolan BM, Brambati M, Bellinvia M, Lauria C, Preiss L, Boneschi V, Whitby D, Brambilla L. Treatment of classic Kaposi sarcoma with a nicotine dermal patch: a phase II clinical trial. phase II clinical trial. J Eur Acad Dermatol Venereol. 2008 Sep;22(9):1101-9. doi: 10.1111/j.1468-3083.2008.02720.x. Epub 2008 Apr 1.r 1.
  • Stanley RJ, Antani S, Long LR, Thoma GR, Gupta K, Das M. Size-invariant Descriptors for Detecting Regions of Abnormal Growth in Cervical Vertebrae Comput Med Imaging Graph. 2008 Jan;32(1):44-52. Epub 2007 Oct 22
  • Xu X, Lee DJ, Antani S, Long LR. A Spine X-ray Image Retrieval System using Partial Shape Matching IEEE Trans Inf Technol Biomed. 2008 Jan;12(1):100-8.
  • Conran R, Fontelo P, Liu F, Fontelo M, White E. Slide2Go: A Virtual Slide Collection for Pathology Education. AMIA Annu Symp Proc; 2007 Nov 10-14; Chicago. p. 918.
  • Du H, Yoo TS. Visualizing Indexing Similarity Over the NLM Medical Subject Headings (MeSH). IEEE InfoVis [Information Visualization] 2007 Conference; 2007 Oct 28-30; Sacramento, California.
  • Li J, Demner-Fushman D, Thoma GR. Localizing Text and Symbols in Images from Biomedical Journal Articles Poster at 20th NIH Research Festival (BIOINFO-6), September 2007, National Institutes of Health
  • Srinivasan B, Antani S, Demner-Fushman D, Thoma GR. Identification and Segmentation of Multi-Panel Images in Biomedical Journal Articles [Poster]. Poster at 20th NIH Research Festival (BIOINFO-1), September 2007, National Institutes of Health
  • Zhu Y, Long LR, Antani S, Xue Z, Thoma GR. Web-based STAPLE for Quality Estimation of Multiple Image Segmentations Poster at 20th NIH Research Festival (IMAG-12), September 2007, National Institutes of Health
  • Antani SK, Deserno TM, Long LR, Thoma GR. Geographically Distributed Complementary Content-Based Image Retrieval Systems for Biomedical Image Informatics Stud Health Technol Inform. 2007;129(Pt 1):493-7
  • Jeronimo J, Massad S, Castle PE, Schiffman M, NIH/ASCCP Research Group. Inter-observer Agreement in the Evaluation of Digitized Cervical Images Obstet Gynecol. Vol. 197, Issue 1, July 2007
  • Jeronimo J, Massad LS, Schiffman M for the NIH-ASCCP Research Group. Visual Appearance of the Uterine Cervix: Correlation with Human Papillomavirus Detection and Type Am J Obstet Gynecol. 2007 Jul;197(1):47.e1-8
  • Johnson CR, Moorhead RM, Munzner TM, Pfister H, Rheingans P, Yoo TS. NIH-NSF Visualization Research Challenges Report. IEEE Press.
  • Moorhead R, Johnson C, Munzner T, Pfister H, Rheingans P, Yoo TS. Visualization Corner: Visualization Research Challenges: A Report Summary. IEEE Computing in Science and Engineering. 2006 Jul-Aug;8(4):66-73. DOI: 10.1109/MCSE.2006.77.
  • Yoo TS, Rheingans P, Chen D, Olano M, Lowekamp B. Animated embroidery: a teapot in modern blackwork. ACM SIGGRAPH 2006 Teapot Exhibit entry; 2006 Jul 30-Aug 3; Boston.
  • Jeronimo J, Long R, Neve L, Ferris D, Noller K, Spitzer M, Mitra S, Guo J, Nutter B, Castle P, Herrero R, Rodriguez AC, Schiffman M. Preparing Digitized Cervigrams for Colposcopy Research and Education: Determination of Optimal Resolution and Compression Parameters J Low Genit Tract Dis. 2006 Jan;10(1):39-44
  • Ackerman MJ. Anatomy in the Digital Age. In: Rifkin BA, Ackerman MJ. Human Anatomy: From the Renaissance to the Digital Age. 2006 May 2. New York: Abrams. p. 318-329.
  • Benjamin A. Rifkin, Ackerman MJ. Human Anatomy (From the Renaissance to the Digital Age). New York: Harry N. Abrams; 2006. 344 pages.
  • Munzner T, Johnson C, Moorhead R, Pfister H, Rheingans P, Yoo TS. Visualization Viewpoints: NIH-NSF Visualization Research Challenges Report Summary. IEEE Computer Graphics and Applications. 2006 Mar-Apr;26(2):20-24.
  • Jeronimo J, Long R, Neve L, Bopf M, Antani K, Schiffman M. Digital Tools for Collecting Data from Cervigrams for Research and Training in Colposcopy J Low Genit Tract Dis. 2006 Jan;10(1):16-25.
  • Castle PE, Jeronimo J, Schiffman M, Herroro R, Rodriguez AC, Bratti MC, Hildesheim A, Wacholder S, Long LR, Neve L, Pfeiffer R, Burk RD. Age-related changes of the cervix influence human papillomavirus type distribution Cancer Res. 2006 Jan 15;66(2):1218-24.
  • Yoo TS. 3D Medical Informatics: Information Science in Multiple Dimensions. In: Chen H, Fuller SS, Friedman C, Hersh W, editors. Medical Informatics: Knowledge Management and Data Mining in Biomedicine. New York: Springer Science. p. 333-58.
  • Yoo TS. The Insight Toolkit: An Open-Source Initiative in Data Segmentation and Registration. In: Johnson C, Hansen C, editors. The Visualization Handbook. Amsterdam: Elsevier; 2005. p. 733-48.
  • Thoma GR. Public Access to Anatomic Images Chapter in: Medical Informatics: Knowledge Management and Data Mining in Biomedicine
  • Yoo TS, Metaxas DN. Open science – combining open data and open source software: Medical image analysis with the Insight Toolkit. Med Image Anal. 2005 Dec;9(6):503-6. Epub 2005 Sep 19.
  • O'Brien JF, Yoo TS, editors. Modern Techniques for Implicit Modeling. Tutorial Notes for ACM SIGGRAPH 2005: the 32nd International Conference on Computer Graphics and Interactive Techniques; 2005 Jul 31-Aug 4; Los Angeles. 300 pages.
  • Long RL, Antani SK, Thoma GR. Image Informatics At a National Research Center Comput Med Imaging Graph. 2005 Mar-Apr;29(2-3):171-93. Epub 2004 Dec 21

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