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  • McCray AT. Clinicaltrials.gov: Linking Patients to Medical Research Cancer Informatics: Essential Technologies for Clinical Trials. New York: Springer Verlag. 2002;:302-307.
  • Weiner M, Schadow G, Lindbergh D, Warvel J, Abernathy G, Perkins SM, Fyffe J, Dexter PR, McDonald CJ. Clinicians' and patients' experiences and satisfaction with unscheduled, nighttime, Internet-based video conferencing for assessing acute medical problems in a nursing facility. AMIA Annu Symp Proc. 2003:709-13.
  • Zhu X, Cimino JJ. Clinicians' evaluation of computer-assisted medication summarization of electronic medical records. Comput Biol Med. 2015 Apr;59:221-31. doi: 10.1016/j.compbiomed.2013.12.006. Epub 2013 Dec 19.
  • Marino-Ramirez L, Bodenreider O, Kantz N, Jordan IK. Co-evolutionary Rates of Functionally Related Yeast Genes Evolutionary Bioinformatics Online 2006;2:295-300.
  • Biondich PG, Downs SM, Carroll AE, Shiffman RN, McDonald CJ. Collaboration between the medical informatics community and guideline authors: fostering HIT standard development that matters. AMIA Annu Symp Proc. 2006:36-40.
  • Fiszman M, Bray B, Shin D, Kilicoglu H, Bennett GC, Bodenreider O, Rindflesch TC. Combining relevance assignment with quality of the evidence to support guideline development. Stud Health Technol Inform. 2010;160(Pt 1):709-13.
  • McDonald CJ, Vreeman DJ, Abhyankar S. Comment on "time to integrate clinical and research informatics" [Letter]. Sci Transl Med. 2013 Apr 3;5(179):179le1. doi: 10.1126/scitranslmed.3005700.
  • Abhyankar S, Vreeman DJ, Westra BL, Delaney CW. Comments on the Use of LOINC and SNOMED CT for Representing Nursing Data [Letter]. Int J Nurs Knowl. 2017 Aug 30. doi: 10.1111/2047-3095.12183. [Epub ahead of print]
  • Humphrey SM, Névéol A, Gobeil J, Ruch P, Darmoni SJ, Browne AC. Comparing a Rule Based vs. Statistical System for Automatic Categorization of MEDLINE Documents According to Biomedical Specialty. J Am Soc Inf Sci Technol. 2009 Dec 1;60(12):2530-2539.
  • Geller J, Morrey CP, Xu J, Halper M, Elhanan G, Perl Y, Hripcsak G. Comparing inconsistent relationship configurations indicating UMLS errors. AMIA Annu Symp Proc. 2009 Nov 14;2009:193-7.
  • Fung K, Kayaalp M, Callaghan FM, McDonald CJ. Comparison of electronic pharmacy prescription records with manually collected medication histories in an emergency department. Ann Emerg Med. 2013 Sep;62(3):205-11. doi: 10.1016/j.annemergmed.2013.04.014. Epub 2013 May 18.
  • Wei D, Wang Y, Perl Y, Xu J, Halper M, Spackman KA. Complexity measures to track the evolution of a SNOMED hierarchy. AMIA Annu Symp Proc. 2008 Nov 6:778-82.
  • Christensen JD, Hutchins GC, McDonald CJ. Computer automated detection of head orientation for prevention of wrong-side treatment errors. AMIA Annu Symp Proc. 2006:136-40.
  • Tang P, McDonald CJ. Computer-Based Patient-Record Systems - Chapter 9. In Shortliffe E, Perreault L, eds. Medical Informatics. New York: springer. 2001:327-358. DOI: 10.1007/978-0-387-21721-5_9.
  • McDonald CJ. Computerization can create safety hazards: a bar-coding near miss. Ann Intern Med. 2006 Apr 4;144(7):510-6.
  • Kho A, Dexter P, Warvel J, Commiskey M, Wilson S, McDonald CJ. Computerized reminders to improve isolation rates of patients with drug-resistant infections: design and preliminary results. AMIA Annu Symp Proc. 2005:390-4.
  • Schadow G, Russler DC, McDonald CJ. Conceptual alignment of electronic health record data with guideline and workflow knowledge. Int J Med Inform. 2001 Dec;64(2-3):259-74.
  • Schadow G, Russler DC, McDonald CJ. Conceptual integration of guidelines and workflow into the electronic health record. Stud Health Technol Inform. 2000;77:807-11.
  • Weiner M, Schadow G, Lindbergh D, Warvel J, Abernathy G, Perkins SM, Dexter PR, McDonald CJ. Conducting a study of Internet-based video conferencing for assessing acute medical problems in a nursing facility. Proc AMIA Symp. 2002:874-8.
  • Schuette P, Callaghan F, Rochester CG. Confidence intervals for binomial proportions with applications to product safety signaling in drug exposure registries [Abstract]. Proc 2011 Joint Statistical Meetings. 2011 July 30.
  • Dawson L, Zarin DA, Emanuel EJ, Friedman LM, Chaudhari B, Goodman SN. Considering usual medical care in clinical trial design. PLoS Med. 2009 Sep;6(9):e1000111. doi: 10.1371/journal.pmed.1000111. Epub 2009 Sep 29.
  • Cimino JJ, Frisse ME, Halamka J, Sweeney L, Yasnoff W. Consumer-mediated health information exchanges: the 2012 ACMI debate. J Biomed Inform. 2014 Apr;48:5-15. doi: 10.1016/j.jbi.2014.02.009. Epub 2014 Feb 20.
  • Zafar A, Overhage JM, McDonald CJ. Continuous speech recognition for clinicians. J Am Med Inform Assoc. 1999 May-Jun;6(3):195-204.
  • Overhage JM, Perkins S, Tierney WM, McDonald CJ. Controlled trial of direct physician order entry: effects on physicians' time utilization in ambulatory primary care internal medicine practices. J Am Med Inform Assoc. 2001 Jul-Aug;8(4):361-71.
  • Gardner RM, Overhage JM, Steen EB, Munger BS, Holmes JH, Williamson JJ, Detmer DE, Ash JS, Cimino JJ, Covvey D, Gardner RM, Nelson NC, Safran C, Shiffman RN, Spallek H, AMIA Board of Directors. Core content for the subspecialty of clinical informatics. J Am Med Inform Assoc. 2009 Mar-Apr;16(2):153-7. Epub 2008 Dec 11
  • Lin M-C, Vreeman DJ, McDonald CJ, Huff SM. Correctness of Voluntary LOINC Mapping for Laboratory Tests in Three Large Institutions. AMIA Annu Symp Proc. 2010 Nov 13;2010:447-51.
  • Fung KW, Richesson R, Bodenreider O. Coverage of rare disease names in standard terminologies and implications for patients, providers, and research. AMIA Annu Symp Proc. 2014 Nov 14;2014:564-72. eCollection 2014.
  • Hume S, Aerts J, Sarnikar S, Huser V. Current applications and future directions for the CDISC Operational Data Model standard: A methodological review. J Biomed Inform. 2016 Apr;60:352-62. doi: 10.1016/j.jbi.2016.02.016. Epub 2016 Mar 2.
  • Huser V, Shmueli-Blumberg D. Data sharing platforms for de-identified data from human clinical trials. Clin Trials. 2018 Apr 1:1740774518769655. doi: 10.1177/1740774518769655. [Epub ahead of print]
  • McDonald CJ, Schadow G, Suico J, Overhage JM. Data standards in health care. Ann Emerg Med. 2001 Sep;38(3):303-11.
  • McDonald CJ, Weiner M, Hui SL. Deaths due to medical errors are exaggerated in Institute of Medicine report. JAMA. 2000 Jul 5;284(1):93-5.
  • Fung K, Gutierrez A, Ameye F, D’Have A, Ariel B. Demonstrating the Benefits of Mapping SNOMED CT to ICD-10-PCS through a Prototype Application for End User Implementation. SNOMED Expo Oct 2017, Bratislava, Slovakia pp. 0
  • McDonald CJ, Blevins L, Dexter P, Schadow G, Hook J, Abernathy G, Dugan T, Martin A, Phillips R, Davis M. Demonstration of the Indianapolis SPIN Query Tool for De-identified Access to Content of the Indiana Network for Patient Care’s (a Real RHIO) Database [Demo] AMIA Annu Symp Proc. 2006:1194.
  • Huser V, Cimino JJ. Desiderata for healthcare integrated data repositories based on architectural comparison of three public repositories. AMIA Annu Symp Proc. 2013 Nov 16;2013:648-56. eCollection 2013.
  • McCray AT, Ide NC. Design and implementation of a national clinical trials registry. J Am Med Inform Assoc. 2000 May-Jun;7(3):313-23.
  • Mitchell JA, Fun J, McCray AT. Design of Genetics Home Reference: A New NLM Consumer Health Resource Journal of the American Medical Informatics Association. 2004 Nov.;11(6):439-447.
  • Gillen JE, Tse T, Ide NC, McCray AT. Design, Implementation and Management of a Web-based Data Entry System for ClinicalTrials.gov Medinfo. 2004 Sept.;2004:1466-70.
  • Jing X, Kay S, Hardiker N. Designing a bio-health information assistant within an EHR. Healthcare Computing 2006: 325-326 (Harrogate, England).
  • Cimino JJ, Ayres EJ, Beri A, Freedman R, Oberholtzer E, Rath S. Developing a self-service query interface for re-using de-identified electronic health record data. Stud Health Technol Inform. 2013;192:632-6.
  • Ammenwerth E, Wolff AC, Knaup P, Ulmer H, Skonetzki S, Van Bemmel JH, McCray AT, Haux R, Kulikowski C. Developing and Evaluating Criteria to Help Reviewers of Biomedical Informatics Manuscripts: A Case Report J Am Med Inform Assoc. 2003 June.
  • Huser V, Sincan M, Cimino JJ. Developing genomic knowledge bases and databases to support clinical management: current perspectives. Pharmgenomics Pers Med. 2014 Sep 9;7:275-83. doi: 10.2147/PGPM.S49904. eCollection 2014.
  • Madani S, Henderson J, Fung K. Development of an oncology subset of SNOMED CT based on patient notes. AMIA Annu Symp Proc 2016: 91-92.
  • Huff SM, Rocha RA, McDonald CJ, De Moor GJ, Fiers T, Bidgood WD Jr, Forrey AW, Francis WG, Tracy WR, Leavelle D, Stalling f, Griffin B, Maloney P, Leland D, Charles L, Hutchins K, Baenziger J. Development of the Logical Observation Identifier Names and Codes (LOINC) vocabulary. J Am Med Inform Assoc. 1998 May-Jun;5(3):276-92.
  • Hole WT, Srinivasan S. Discovering Missed Synonymy in a Large Concept-Orientated Methathesaurus AMIA Annu Symp Proc. 2000;():354-8.
  • Del Fiol G, Curtis C, Cimino J, Iskander A, Kalluri AS, Jing X, Hulse NC, Long J, Overby CL, Schardt C, Douglas DM. Disseminating context-specific access to online knowledge resources within electronic health record systems. Stud Health Technol Inform. 2013;192:672-6.
  • Huser V, Cimino JJ. Don't take your EHR to heaven, donate it to science: legal and research policies for EHR post mortem. J Am Med Inform Assoc. 2014 Jan-Feb;21(1):8-12. doi: 10.1136/amiajnl-2013-002061. Epub 2013 Aug 21.
  • Mao Y, Fung K, Demner-Fushman D. Drug-drug Interaction Extraction via Transfer Learning. AMIA Fall Symposium, 2019.
  • Weinberger M, Murray MD, Marrero DG, Brewer N, Lykens M, Harris LE, Seshadri R, Caffrey H, Roesner JF, Smith F, Newell AJ, Collins JC, McDonald CJ, Tierney WM. Effectiveness of pharmacist care for patients with reactive airways disease: a randomized controlled trial. JAMA. 2002 Oct 2;288(13):1594-602.
  • Tierney VM, Overhage JM, Murray MD, Harris LE, Zhou XH, Eckert GJ, Smith FE, Nienaber N, McDonald CJ, Wolinsky FD. Effects of computerized guidelines for managing heart disease in primary care. J Gen Intern Med. 2003 Dec;18(12):967-76.
  • Laflamme MR, Dexter PR, Graham MF, Hui SL, McDonald CJ. Efficiency, comprehensiveness and cost-effectiveness when comparing dictation and electronic templates for operative reports. AMIA Annu Symp Proc. 2005:425-9.

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