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  • Conran R, Fontelo P, Liu F, Fontelo M, White E. Slide2Go: A Virtual Slide Collection for Pathology Education. AMIA Annu Symp Proc; 2007 Nov 10-14; Chicago. p. 918.
  • Yang F, Yu H, Poostchi M, Silamut K, Maude RJ, Jaeger S. Smartphone-Supported Automated Malaria Parasite Detection. SIIM conference on Machine Intelligence in Medical Imaging, 2018.
  • Yang F, Yu H, Silamut K, Maude R, Jaeger S, Antani SK. Smartphone-Supported Malaria Diagnosis Based on Deep Learning. Proceedings of 10th Workshop on Machine Learning in Medical Imaging (MLMI 2019) in conjunction with MICCAI, Shenzhen, China, Oct 13-17, 2019.
  • Neve L, Long LR, Antani SK. Software: Boundary Marking Tool 2 (BMT2)
  • Lowekamp B, Yoo TS. Software: Insight Toolkit (ITK): Software for Image Segmentation and Registration.
  • Thoma GR, Ford G, Demner-Fushman D, Antani SK, Chung M. Software: Panorama
  • Lowekamp B, Chen D, Santoroski J, Yaniv Z, Yoo TS. Software: SimpleITK.
  • Xue Z, Long LR, Antani SK, Thoma GR. Spine x-ray image retrieval using partial vertebral boundaries. 24th International Symposium on Computer-Based Medical Systems. Bristol, UK. June 2011.
  • Butan C, Hartnell LM, Fenton AK, Bliss D, Sockett RE, Subramaniam S, Milne JL. Spiral architecture of the nucleoid in Bdellovibrio bacteriovorus. J Bacteriol. 2011 Mar;193(6):1341-50. doi: 10.1128/JB.01061-10. Epub 2010 Dec 10.
  • Hsu W, Long LR, Antani SK. SPIRS: A Framework for Content-based Image Retrieval from Large Biomedical Databases Stud Health Technol Inform. 2007;129(Pt 1):188-92.
  • KC S, Antani SK, Thoma GR. Stitched Multipanel Biomedical Figure Separation. IEEE, 28th International Symposium on Computer-Based Medical Systems (CBMS), pp. 54-59, 2015.
  • Tran EE, Borgnia MJ, Kuybeda O, Schauder DM, Bartesaghi A, Frank GA, Sapiro G, Milne JL, Subramaniam S. Structural mechanism of trimeric HIV-1 envelope glycoprotein activation. PLoS Pathog. 2012;8(7):e1002797. doi: 10.1371/journal.ppat.1002797. Epub 2012 Jul 12.
  • Harris AK, Meyerson JR, Matsuoka Y, Kuybeda O, Moran A, Bliss D, Das SR, Yewdell JW, Sapiro G, Subbarao K, Subramaniam S. Structure and accessibility of HA trimers on intact 2009 H1N1 pandemic influenza virus to stem region-specific neutralizing antibodies. Proc Natl Acad Sci U S A. 2013 Mar 19;110(12):4592-7. doi: 10.1073/pnas.1214913110. Epub 2013 Mar 4.
  • Zou J, Le DX, Thoma GR. Structure and Content Analysis for HTML Medical Articles: A Hidden Markov Model Approach Proc August 2007 ACM Symposium on Document Engineering. pp. 199-201
  • Deckard J, McDonald CJ, Vreeman DJ. Supporting interoperability of genetic data with LOINC. J Am Med Inform Assoc. 2015 May;22(3):621-7. doi: 10.1093/jamia/ocu012. Epub 2015 Feb 5.
  • Long RL, Antani S, Jeronimo J, Schiffman M, Bopf M, Neve L, Cornwall C, Budihas SC, Thoma GR. Technology for Medical Education, Research, and Disease Screening by Exploitation of Biomarkers in a Large Collection of Uterine Cervix Images Proc CBMS 2006, June 2006, Salt Lake City, Utah; 826-31
  • Yoo TS, Morris J, Chen DT, Burgess J, Richardson AC. Template Guided Intervention: Interactive Visualization and Design for Medical Fused Deposition Models. In: Niessen WJ, Viergever MA, editors. Proceedings of the Fourth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI); 2001 Oct 14-17; Utrecht, The Netherlands. Lecture Notes in Computer Science 2208. Springer; 2001. p. 45-8.
  • Liu J, Subramanian KR, Yoo TS. Temporal Volume Flow: An Approach to Tracking Failure Recovery. In: Summers RM, van Ginneken B, editors. Proceedings of SPIE Medical Imaging 2011: Computer-Aided Diagnosis; 2011 Feb 12-17; Lake Buena Vista, Florida;7963. SPIE; 2011 Mar 4. DOI: 10.1117/12.878220.
  • Misra D, Seamans J, Thoma GR. Testing the Scalability of a DSpace-based Archive Proc. IS&T Archiving 2008. Bern, Switzerland. June 2008:36-40
  • You D, Rahman MM, Antani SK, Demner-Fushman D, Thoma GR. Text- and content-based biomedical image modality classification. Proc. SPIE Medical Imaging. Orlando, FL. February 2013;8674-21.
  • Mrabet Y, Kilicoglu H, Demner-Fushman D. TextFlow: A Text Similarity Measure based on Continuous Sequences. Proceedings of the 55th Annual Meeting of the Association for Computational Linguistics, 2017, Vancouver, Canada, July 30 - August 4, Volume
  • Lowekamp BC, Chen DT, Ibáñez L, Blezek D. The Design of SimpleITK. Front Neuroinform. 2013 Dec 30;7:45. doi: 10.3389/fninf.2013.00045. eCollection 2013.
  • Coakley M, Hurt D, Weder N, Mtingwa M, Fincher EC, Alekseyev V, Chen D, Yun A, Gizaw M, Swan J, Yoo TS, Huyen Y. The NIH 3D Print Exchange: A Public Resource for Bioscientific and Biomedical 3D Prints 3D Print Additive Manufacturing, Sep. 1, 2014, 1(3):137-140.
  • Ackerman MJ, Yoo T. The Visible Human Data Sets (VHD) and Insight Toolkit (ITk): experiments in open source software. AMIA Annu Symp Proc [American Medical Informatics Association Annual Symposium Proceedings]; 2003 Nov 8-12; Washington DC. p. 773.
  • Ackerman MJ. The Visible Human Project Moves from Data to Knowledge. Lékař a technika. 2002;33(1):4-12.

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