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  • Antani S, Long LR, Thoma GR. Bridging the Gap: Enabling CBIR in Medical Applications Proc IEEE CBMS. Jyvaskyla, Finland. June 2008:4-6
  • Yang F, Quizon N, Silamut K, Maude RJ, Jaeger S, Antani SK. Cascading YOLO: Automated Malaria Parasite Detection for Plasmodium Vivax in Thin Blood Smears. To be presented at SPIE Medical Imaging, Feb.18-20, 2020, Houston, USA.
  • Chang Y, Antani S, Lee DJ, Gledhill K, Long LR, Christensen P. CBIR of Spine X-ray Images on Inter-vertebral Disc Space and Shape Profiles Proc IEEE CBMS. Jyvaskyla, Finland. June 2008:224-9.
  • Srinivasan Y, Nutter BS, Mitra SD, Yang S, Phillips B, Long LR. Challenges in Automated Detection of Cervical Intraepithelial Neoplasia Proc SPIE Medical Imaging 2007. Vol. 6514: 65140F-1-11
  • Xue Z, You D, Candemir S, Jaeger S, Antani SK, Long LR, Thoma GR. Chest X-ray Image View Classification The 28th IEEE International Symposium on Computer-Based Medical Systems
  • Candemir S. Chest X-ray Screening System: Segmentation Module – v3
  • Zohora FT, Antani SK, Santosh KC. Circle-like foreign element detection in chest x-rays using normalized cross-correlation and unsupervised clustering. Proc. SPIE 10574, Medical Imaging 2018: Image Processing, 105741V (2 March 2018); doi: 10.1117/12.2293739; doi.org/10.1117/12.2293739.
  • Liang Z, Powell A, Ersoy I, Poostchi M, Silamut K, Palaniappan K, Guo P, Hossain M, Antani SK, Maude R, Huang J, Jaeger S, Thoma GR. CNN-Based Image Analysis for Malaria Diagnosis. IEEE International Conference on Bioinformatics & Biomedicine (BIBM), Shenzhen, China, 2016.
  • Demner-Fushman D, Antani SK, Simpson M, Thoma GR. Combining Medical Domain Ontological Knowledge and Low-level Image Features for Multimedia Indexing Procf OntoImage 2008, part of LREC 2008. Marrakech, Morrocco. May 2008:CDROM Proceedings
  • Mao S, Mansukhani P, Thoma GR. Combining Static Classifiers and Class Syntax Models for Logical Entity Recognition in Scanned Historical Documents Proc IEEE CVPR, Minneapolis, Minnesota, June 2007, pp. 1-8.
  • Xue Z, Antani SK, Long LR, Thoma GR. Comparative Performance Analysis of Cervix ROI Extraction and Specular Reflection Removal Algorithms for Uterine Cervix Image Analysis Proc SPIE Medical Imaging 2007. Vol. 6512: 65124I-1-9
  • Rajaraman S, Antani SK, Candemir S, Xue Z, Abuya J, Kohli M, Alderson P, Thoma GR. Comparing deep learning models for population screening using chest radiography. Proc. SPIE 10575, Medical Imaging 2018: Computer-Aided Diagnosis, 105751E (27 February 2018).
  • Morris J, Yoo TS, Chen D, Burgess J, Richardson AC. Computer Assisted Pedicle Screw Trajectory Guidance Using Fused Deposition Modeling. Abstract in Computer Assisted Surgery. 2001.
  • Gordon S, Zimmerman G, Long LR, Antani S, Jeronimo J, Greenspan H. Content Analysis of Uterine Cervix Images: Initial Steps Towards Content Based Indexing and Retrieval of Cervigrams Proc of SPIE Vol. 6144 61444U-7
  • De Herrera A, Long LR, Antani SK. Content-Based fMRI Brain Maps Retrieval. International Conference on Brain and Health Informatics, Omaha, NE, USA, October 13-16, 2016.
  • Almubarak HA, Stanley RJ, Long LR, Antani SK, Thoma GR, Zuna R, Frazier SR. Convolutional Neural Network Based Localized Classification of Uterine Cervical Cancer Digital Histology Images. Procedia Computer Science, Volume 114, 2017, Pages 281-287, ISSN 1877-0509, https://doi.org/10.1016/j.procs.2017.09.044.
  • Thoma GR, Razi A, Seamans J, Strupp-Adams A, Edwards L, Gao J, Ledoux MT. Dataset: AnatQuest
  • Ackerman MJ. Dataset: Visible Human Project reference data sets.
  • Guo P, Singh S, Xue Z, Long LR, Antani SK. Deep Learning for Assessing Image Focus for Automated Cervical Cancer Screening. 2019 IEEE EMBS International Conference on Biomedical & Health Informatics (BHI) DOI: 10.1109/BHI.2019.8834495.
  • Candemir S, Rajaraman S, Thoma GR, Antani SK. Deep Learning for Grading Cardiomegaly Severity in Chest X-rays: An Investigation. Proc. IEEE Life Sciences Conference (LSC 2018), Montreal, Quebec, Canada, 28 – 30 October 2018. pp. 109-113.
  • Lee D, Antani SK, Xu X, Long LR. Design and Evaluation of a Curve Matching-based Spine X-ray Image Retrieval System SPIE Medical Imaging, February 2005; San Diego, CA; vol. 5748:365-373
  • Moallem G, Sari-Sarraf H, Poostchi M, Maude RJ, Silamut K, Hossain MA, Antani SK, Jaeger S, Thoma G. Detecting and segmenting overlapping red blood cells in microscopic images of thin blood smears. Proc. SPIE 10581, Medical Imaging 2018:Digital Pathology, 105811F (6 March 2018); doi: 10.1117/12.2293762.
  • Jaeger S, Karargyris A, Antani SK, Thoma GR. Detecting tuberculosis in radiographs using combined lung masks. 34th Int. Conf. of the IEEE Engineering in Medicine & Biology Society (EMBC). San Diego, CA. August 2012:4978-4981. doi: 10.1109/EMBC.2012.6347110.
  • Antani SK, Natarajan M, Long JL, Long RL, Thoma GR. Developing a Comprehensive System for Content-based Image Retrieval of Image and Text from a National Survey SPIE Medical Imaging, February 2005; San Diego, CA; vol. 5748:152-161.
  • Ebert D, McClanahan T, Rheingans P, Yoo TS. Direct Volume Rendering from Photographic Data. In: deLeeuw W, van Liere R, editors. DataVisualization 2000: Proceedings of the Joint EUROGRAPHICS and IEEE TCVG [Technical Committee on Visualization and Graphics] Symposium on Visualization; 2000 May 29-30; Amsterdam, The Netherlands. Berlin: Springer-Verlag; 2000 May 19. p. 137-46.
  • He L, Long LR, Antani S, Thoma GR. Distribution Fitting-based Pixel Labeling For Histology Image Segmentation Proceedings of SPIE Medical Imaging 2011. February 2011
  • Yoo T, Ackerman MJ, Lorensen W, Schroeder W, Chalana V, Aylward S, Metaxas D, Whitaker R. Engineering and Algorithm Design for an Image Processing API: A Technical Report on ITK - The Insight Toolkit. In: Westwood JD, Hoffman HM, Robb RA, Stredney D, editors. Stud Health Technol Inform [Studies in Health Technology and Informatics] -- Proceedings of the 10th annual Medicine Meets Virtual Reality conference – Digital Upgrades: Applying Moore’s Law to Health; 2002 Jan 23-26; Newport Beach, California;85:586-92. Amsterdam: IOS Press.
  • Caban JJ, Yao J, Mollura DJ, Liao D, Yoo TS. Enhancing image analytic tools by fusing quantitative physiological values with image features. In: SIIM [Society for Imaging Informatics in Medicine] 2011 Scientific Abstract Book. SIIM Annual Meeting Learning Track 1 Scientific Sessions: Advanced Visualization: Making Advanced Visualization Tools Work for You; 2011 Jun 2-5; Washington DC/National Harbor, Maryland.
  • Caban JJ, Liao D, Yao J, Mollura DJ, Gochuico B, Yoo TS. Enhancing image classification models with multimodal biomarkers. In: Summers RM, van Ginneken B, editors. Proceedings of SPIE Medical Imaging 2011: Computer-Aided Diagnosis; 2011 Feb 12-17; Lake Buena Vista (Orlando area), Florida;7963:9 pages. DOI: 10.1117/12.878084.
  • Gordon S, Lotenberg S, Long LR, Antani SK, Jeronimo J, Greenspan H. Evaluation of uterine cervix segmentations using ground truth from multiple experts. Comput Med Imaging Graph. 2009 Apr;33(3):205-16. doi: 10.1016/j.compmedimag.2008.12.002. Epub 2009 Feb 13.
  • Deserno TM, Antani SK, Long LR. Exploring Access to Scientific Literature Using Content-Based Image Retrieval Proc SPIE Medical Imaging 2007. Vol. 6516: 65160L-1-8.
  • Lowekamp B, Rheingans P, Yoo TS. Exploring Surface Characteristics with Interactive Gaussian Images (A Case Study). In: Moorhead R, Gross M, Joy KI, editors. Proceedings of IEEE Visualization 2002 (VIS 2002); 2002 Oct 27-Nov 1; Baltimore, Maryland. Piscataway, New Jersey: IEEE Press. p. 553-6. DOI: 10.1109/VISUAL.2002.1183828.
  • Antani SK, Demner-Fushman D, Li J, Srinivasan BV, Thoma GR. Exploring Use of Images in Clinical Articles for Decision Support in Evidence-Based Medicine Proc. SPIE-IS/T Electronic Imaging. San Jose, CA. January 2008;6815:68150Q(1-10)
  • Xue Z, Long LR, Jaeger S, Folio L, Thoma GR. Extraction of Aortic Knuckle Contour in Chest Radiographs Using Deep Learning. EMBC 2018.
  • Xue Z, You D, Chachra S, Antani SK, Long LR, Demner-Fushman D, Thoma GR. Extraction of endoscopic images for biomedical figure classification. Proc. SPIE. 9418, Medical Imaging 2015: PACS and Imaging Informatics: Next Generation and Innovations, 94180P. (March 17, 2015) doi: 10.1117/12.2081033.
  • You D, Apostolova E, Antani SK, Demner-Fushman D, Thoma GR. Figure content analysis for improved biomedical article retrieval. Proceedings of IS&T/SPIE Electronic Imaging, 2009, San Jose, California, United States, Document Recognition and Retrieval XVI; 72470V (2009), 1-10; doi: 10.1117/12.805976
  • Xue Z, Candemir S, Antani SK, Long LR, Jaeger S, Demner-Fushman D, Thoma GR. Foreign Object Detection in Chest X-rays. Proc IEEE International Conference on Bioinformatics and Biomedicine (BIBM) 2015, International Workshop on Biomedical and Health Informatics, Bethesda, Maryland, Nov. 9-12, 2015, pp: 56-61.
  • Ackerman MJ, Yoo T, Jenkins D. From Data to Knowledge - The Visible Human Project Continues. In: Patel VL, Rogers R, Haux R, editors. Stud Health Technol Inform [Studies in Health Technology and Informatics] – MEDINFO 2001: Proceedings of the 10th World Congress on Medical Informatics (2001 Sep 2-5; London);84(Part II):887-90. Amsterdam: IOS Press.
  • Deserno TM, Antani SK, Long LR. Gaps in Content-Based Image Retrieval Proc SPIE Medical Imaging 2007. Vol. 6516: 65160J-1-11
  • Xue Z, Rajaraman S, Long LR, Antani SK, Thoma GR. Gender Detection from Spine X-ray Images Using Deep Learning. Proc. IEEE International Symposium on Computer-Based Medical Systems (CBMS), Karlstad, Sweden, 2018. pp. 54-58, DOI:10.1109/CBMS.2018.00017.
  • Candemir S, Jaeger S, Palaniappan K, Antani SK, Thoma GR. Graph Cut Based Automatic Lung Boundary Detection in Chest Radiographs. 1st Annual IEEE Healthcare Innovation Conference of the IEEE EMBS Houston, Texas USA, 7 - 9 November, 2012.
  • de Herrera G, Long LR, Antani SK. Graph Representation for Content–based fMRI Activation Map Retrieval. Proceedings of 1st Life Sciences Conference, Sydney, Australia, December 2017 pp. 129-32 DOI: https://doi.org/10.1109/LSC.2017.8268160.
  • Chen D, Morse BS, Lowekamp B, Yoo TS. Hierarchically partitioned implicit surfaces for interpolating large point set models. In: Kim M-S, Shimada K, editors. Advances in Geometric Modeling and Processing. Proceedings of the 4th international conference on Geometric Modeling and Processing (GMP'06); 2006 Jul 26-28; Pittsburgh, Pennsylvania. Lecture Notes in Computer Science 4077. Berlin: Springer-Verlag; 2006. p. 553-62.
  • Faruque J, Antani SK, Long LR, Kim L, Thoma GR. Image similarity ranking of focal computed tomography liver lesions using a 2AFC technique. Proc. SPIE. 9787, Medical Imaging 2016: Image Perception, Observer Performance, and Technology Assessment, 97870N. DOI: 10.1117/12.2217364.
  • Webster RJ, Yaniv Z. Image-Guided Procedures, Robotic Interventions, and Modeling. Proc. SPIE 9786. (ISBN: 9781510600218 ).
  • Xue Z, Long LR, Antani SK, Jeronimo J, Thoma GR. Image-retrieval System Aids Cervical Cancer Studies SPIE Newsroom. April 2009
  • Yoo TS, Subramanian KR. Implicit Snakes: Active Constrained Implicit Models. In: Niessen WJ, Viergever MA, editors. Proceedings of the Fourth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI); 2001 Oct 14-17; Utrecht, The Netherlands. Lecture Notes in Computer Science 2208. Springer; 2001. p. 1379-81.
  • Xue Z, Antani SK, Long LR, Demner-Fushman D, Thoma GR. Improving face image extraction by using deep learning technique. Proc. SPIE 9789, Medical Imaging 2016: PACS and Imaging Informatics: Next Generation and Innovations, 97890J (March 25, 2016); doi:10.1117/12.2216278.
  • Long LR, Thoma GR. Indexing of Image Content in Spine X-Rays Proc. of SPIE Storage and Retrieval for Image and Video Databases VIII. 2000 Jan;3972:55-63.
  • Pedrosa G, Rahman MM, Antani SK, Demner-Fushman D, Long LR, Traina A. Integrating visual words as bunch of n-grams for effective biomedical image classification. Proceedings of IEEE WACV 2014: IEEE Winter Conference on Applications of Computer Vision. Steamboat Springs, CO. March 24-26, 2014.

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