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  • Mao S, Kanungo T. Automatic Training of Page Segmentation Algorithms: An Optimization Approach International Conference on Pattern Recognition. 2000 Sept.;:531-534.
  • Roberts K, Kilicoglu H, Fiszman M, Demner-Fushman D. Automatically classifying question types for consumer health questions. AMIA Annu Symp Proc. 2014 Nov 14;2014:1018-27. eCollection 2014.
  • Le DX, Thoma GR. Automatically Creating Biomedical Bibliographic Records from Printed Volumes of Old Indexes In: Callaos N, Lesso W, editors. SCI 2005. Proc 9th World Multiconference on Systemics, Cybernetics and Informatics; 2005 Jul 10-13; Vol. 3, Computer Science and Engineering. Orlando (FL): International Institute of Informatics and Systemics; c2005. 267-74
  • Demner-Fushman D, Few B, Hauser SE, Thoma GR. Automatically Identifying Health Outcome Information in MEDLINE Records J Am Med Inform Assoc. 2006 Jan-Feb;13(1):52-60. Epub 2005 Oct 12.
  • Pearson G, Moon CW. Bridging Two Biomedical Journal Databases with XML - A Case Study. Proc. 14th IEEE Symposium on Computer-Based Medical Systems: IEEE Computer Society. 2001 Jul;:309-14.
  • Zou J, Le DX, Thoma GR. Combining DOM Tree and Geometric Layout Analysis for Online Medical Journal Article Segmentation Proc JCDL, June 2006, Chapel Hill, NC; 119-28
  • Mrabet Y, Kilicoglu H, Roberts K, Demner-Fushman D. Combining Open-domain and Biomedical Knowledge for Topic Recognition in Consumer Health Questions. AMIA Annu Symp Proc. 2017 Feb 10;2016:914-923. eCollection 2016.
  • Demner-Fushman D, Humphrey SM, Ide NC, Loane RF, Mork J, Ruch P, Ruiz ME, Smith LH, Wilbur WJ, Aronson AR. Combining Resources to Find Answers to Biomedical Questions Proc TREC 2007, 205-14
  • Kim J, Le DX, Thoma GR. Combining SVM Classifiers to Identify Investigator Name Zones in Biomedical Articles. IS&T/SPIE’s 22nd Annual Symposium on Electronic Imaging. San Francisco, CA, January 2012; 8297.
  • Yepes AJ, Mork JG, Demner-Fushman D, Aronson AR. Comparison and combination of several MeSH indexing approaches. AMIA Annu Symp Proc. 2013 Nov 16;2013:709-18. eCollection 2013.
  • Thoma GR, Mao S, Misra D, Rees J. Design of a Digital Library for Early 20th Century Medico-legal Documents Proc ECDL 2006. Eds: Gonzalo J et al. Berlin: Springer-Verlag; LNCS 4172: 147-57
  • Mao S, Misra D, Seamans J, Thoma GR. Design Strategies for a Prototype Electronic Preservation System for Biomedical Documents IS&T Archiving 2005 Conference, April 2005; 48-53.
  • Workman E, Weir, C, Rindflesch TC. Differentiating Sense through Semantic Interaction Data. AMIA Annu Symp Proc. 2017 Feb 10;2016:1238-1247. eCollection 2016.
  • Misra D, Hall RH, Payne SM, Thoma GR. Digital preservation and knowledge discovery based on documents from an international health science program. Proc. 12th ACM/IEEE-CS JCDL, pg 23-26 (2012). doi: 10.1145/2232817.2232823.
  • Chen S, Misra D, Thoma GR. Efficient Automatic OCR Word Validation Using Word Partial Format Derivation and Language Model Document Recognition and Retrieval XVII. Proceedings of the SPIE. San Jose, CA. January 2010;7534:75340O-75340O-8
  • Mao S, Kanungo T. Empirical Performance Evaluation of Page Segmentation Algorithms SPIE conference on Document Recognition and Retrieval. 2000 Jan.;:303-314.
  • Ide NC, Loane RF, Demner-Fushman D. Essie: A Concept-based Search Engine for Structured BiomedicalText J Am Med Inform Assoc. 2007 May-Jun;14(3):253-63. Epub 2007 Feb 28
  • Zou J, Le DX, Thoma GR. Extracting a Sparsely-Located Named Entity from Online HTML Medical Articles Using Support Vector Machine Proc SPIE-IS/T Electronic Imaging. San Jose, CA. January 2008;6815:6815OP(1-10)
  • Mork JG, Bodenreider O, Demner-Fushman D, Dogan RI, Lang FM, Lu Z, Névéol A, Peters L, Shooshan SE, Aronson AR. Extracting Rx information from clinical narrative. J Am Med Inform Assoc. 2010 Sep-Oct;17(5):536-9. doi: 10.1136/jamia.2010.003970.
  • Ahlers C, Fiszman M, Demner-Fushman D, Lang F, Rindflesch TC. Extracting Semantic Predications from MEDLINE Citations for Pharmacogenomics Pacific Symposium on Biocomputing 2007 12:209-220
  • Wei W, Marmor R, Singh S, Wang S, Demner-Fushman D, Kuo TT, Hsu CN, Ohno-Machado L. Finding Related Publications: Extending the Set of Terms Used to Assess Article Similarity. AMIA Jt Summits Transl Sci Proc. 2016 Jul 20;2016:225-34. eCollection 2016.
  • Aronson AR, Bodenreider O, Demner-Fushman D, Fung KW, Lee VK, Mork JG, Névéol A, Peters L, Rogers WJ. From indexing the biomedical literature to coding clinical text: experience with MTI and machine learning approaches. Proc 2007 Workshop BioNL'07, June 2007, pp. 105-112, Prague, Czech Republic.
  • Lin J, Karakos D, Demner-Fushman D, Khudanpur S. Generative Content Models for Structural Analysis of Medical Abstracts Proc 2006 BioNLP'06. June 2006, New York City, New York
  • Sabir TF, Hauser SE, Thoma GR. Historical Author Affiliations Assist Verification of Automatically Generated MEDLINE Citations AMIA Annu Symp Proc. 2006:1082
  • Kim IC, Le DX, Thoma GR. Hybrid approach combining contextual and statistical information for identifying and statistical information for identifying MEDLINE citation terms. Proc. SPIE-IS/T Electronic Imaging. San Jose, CA. January 2008;6815:68150P(1-9)

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