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  • Kim J, Le DX, Thoma GR. Identification of Investigator Name Zones Using SVM Classifiers and Heuristic Rules. 12th international Conference on Document Analysis and Recognition (ICDAR). Washington D.C., August 2013.
  • Kim I, Le DX, Thoma GR. Identifying “comment-on” citation data in online biomedical articles using SVM-based text summarization technique. Proc. Int’l Conf. Artificial Intelligence (ICAI’12), vol. 1, pp. 431-437, Las Vegas, July 2012.
  • Kim J, Le DX, Thoma GR. Inferring Grant Support Types From Online Biomedical Articles 22nd IEEE ISCBMS. Albuquerque, NM. August 2009
  • Rahman MM, You D, Simpson MS, Antani SK, Demner-Fushman D. Interactive Cross and Multimodal Biomedical Image Retrieval Based on Automatic Region-Of-Interest (ROI) Identification and Classification. International Journal of Multimedia Information Retrieval (MMIR) 2014 Sep;3(3):131-146.
  • Thoma GR, Ford G, Chung M, Vasudevan K, Antani S. Interactive Publications: Creation and Usage Proc IS and T/SPIE Electronic Imaging 2006: Digital Publishing. San Jose, CA. Jan 15-19, 2006.
  • Kilicoglu H, Fiszman M, Demner-Fushman D. Interpreting Consumer Health Questions: The Role of Anaphora and Ellipsis. Proceedings of BioNLP 2013. Pages 54-62.
  • Zhang X, Zou J, Le DX, Thoma GR. Investigator Name Recognition From Medical Journal Articles: A Comparative Study of SVM and Structural SVM International Workshop on Document Analysis Systems. June 2010:121-8
  • Vajda S. Label the many with a few: Semi-automatic medical image modality discovery in a large image collection. IEEE Symposium Series on Computational Intelligence, Orlando, FL, Dec 9-12, 2014
  • Kim J, Hong S, Thoma GR. Labeling Author Affiliations in Biomedical Articles Using Markov Model Classifiers. The 13th International Conference on Data Mining (DMIN2017), pp. 105-110, Las Vegas, USA, July 2017.
  • Zou J, Antani SK, Thoma GR. Localizing and Recognizing Labels for Multi-Panel Figures in Biomedical Journals. Proceedings of International Conference on Document Analysis and Recognition, November 13, 2017
  • Kim I, Thoma GR. Machine Learning with Selective Word Statistics for Automated Classification of Citation Subjectivity in Online Biomedical Articles. Proc. Int’l Conf. Artificial Intelligence (ICAI’17), pp. 201-207, Las Vegas, July 2017.
  • Rae A, Kim J, Le DX, Thoma GR. Main Content Detection in HTML Journal Articles. DocEng ’18: ACM Symposium on Document Engineering 2018, August 28–31, 2018, Halifax, NS, Canada. ACM, New York, NY, USA, 4 pages. https://doi.org/10.1145/3209280.3229115
  • Xue Z, Rahman M, Antani SK, Long LR, Demner-Fushman D, Thoma GR. Modality Classification for Searching Figures in Biomedical Literature. Proceedings of the IEEE 29th International Symposium on Computer-Based Medical Systems, pp. 152-157, 2016. doi:10.1109/CBMS.2016.29.
  • Rahman MM, Antani S, Long LR, Demner-Fushman D, Thoma GR. Multi-Modal Query Expansion Based on Local Analysis for Medical Image Retrieval. Lecture Notes in Computer Science. First MICCAI International Workshop on Medical Content-Based Retrieval for Clinical Decision Support (MCBR-CDS 2009); part of the 12th International Conference on Medical Image Computing and Computer Assisted Interventio February 2010;5853/2010(doi: 10.1007/978-3-642-11769-5):110-9..
  • Kim J, Le DX, Thoma GR. Naive Bayes and SVM Classifiers For Classifying Databank Accession Number Sentences From Online Biomedical Articles IS&T/SPIE's 22nd Annual Symposium on Electronic Imaging. San Jose, CA. January 2010;7534:75340U-1 - 8
  • Kim J, Le DX, Thoma GR. Naive Bayes Classifier for Extracting Bibliographic Information From Biomedical Online Articles Proc 2008 International Conference on Data Mining. Las Vegas, Nevada, USA. July 2008;II:373-8
  • Kim J, Thoma GR. Named Entity Recognition in Affiliations of Biomedical Articles Using Statistics and HMM Classifiers. The 2016 International Conference on Data Mining (DMIN2016), Las Vegas, USA, pp. 236-241, July, 2016.
  • Ben Abacha A, De Herrera A, Gayen S, Demner-Fushman D, Antani SK. NLM at ImageCLEF 2017 Caption Task. International Conference of the Cross-Language Evaluation Forum for European Languages 2017 Sep 11 (pp. 358-360). Springer, Cham.
  • Ben Abacha A, Demner-Fushman D. On the Role of Question Summarization and Information Source Restriction in Consumer Health Question Answering. Proceedings of the AMIA 2019 Informatics Summit, San Francisco, CA, USA, March 25-28, 2019.
  • Ben Abacha A, Demner-Fushman D. On the Summarization of Consumer Health Questions. Proceedings of the 57th Annual Meeting of the Association for Computational Linguistics, Florence, Italy 2019.
  • Zou J, Le DX, Thoma GR. Online Medical Journal Article Layout Analysis Proc SPIE-IS&T Electronic Imaging 2007, SPIE Vol. 6500: 65000V (1-12)
  • Ben Abacha A, Agichtein E, Pinter Y, Demner-Fushman D. Overview of the Medical QA Task @ TREC 2017 LiveQA Track. TREC, Gaithersburg, MD, 2017.
  • Ben Abacha A, Shivade C, Demner-Fushman D. Overview of the MEDIQA 2019 Shared Task on Textual Inference, Question Entailment and Question Answering. Proceedings of the 18th BioNLP Workshop and Shared Task, Florence, Italy, August 1, 2019.
  • Ben Abacha A, Shivade C, Demner-Fushman D. Overview of the MEDIQA 2019 Shared Task on Textual Inference, Question Entailment and Question Answering. Proceedings of the BioNLP 2019 workshop.
  • Le DX, Thoma GR. Page Layout Classification Technique for Biomedical Documents Proc. World Multiconference on Systems, Cybernetics and Informatics (SCI). 2000 Jul.;X: 348-52.
  • Xue Z, Long LR, Antani SK, Thoma GR. Pathology-based vertebral image retrieval. Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2011, March 30 - April 2, 2011, Chicago, Illinois, USA. pages 1893-1896, IEEE, 2011. doi: 10.1109/ISBI.2011.5872778.
  • Walker FL, Gallagher ME, Thoma GR. PDF File Migration to PDF/A: Technical Considerations. Proc IS&T Archiving 2007. Arlington, Virginia, May 2007; 6-11.
  • Sutton VR, Hauser SE. Preliminary comparison of the SEER and PubMed search engines for answering clinical questions using PubMed on Tap, a PDA-based program for accessing biomedical literature AMIA Annu Symp Proc. 2005:1128
  • Walker FL, Thoma GR. Read it to Me! Proc. 21st National Online Meeting. 2000 May;: 473-83.
  • Demner-Fushman D, Cohen KB, Ananiadou S, Tsujii J. Sesame Street at BioNLP 2019. Proceedings of the BioNLP 2019 workshop.
  • Chen S, Mao S, Thoma GR. Simultaneous Layout Style and Logical Entity Recognition in a Heterogeneous Collection of Documents Proc ICDAR2007. Curitiba, Brazil; September 2007, pp. 118-22
  • Thoma GR, Ford G, Demner-Fushman D, Antani SK, Chung M. Software: Panorama
  • Zou J, Le DX, Thoma GR. Structure and Content Analysis for HTML Medical Articles: A Hidden Markov Model Approach Proc August 2007 ACM Symposium on Document Engineering. pp. 199-201
  • Misra D, Seamans J, Thoma GR. Testing the Scalability of a DSpace-based Archive Proc. IS&T Archiving 2008. Bern, Switzerland. June 2008:36-40
  • Mrabet Y, Kilicoglu H, Demner-Fushman D. TextFlow: A Text Similarity Measure based on Continuous Sequences. Proceedings of the 55th Annual Meeting of the Association for Computational Linguistics, 2017, Vancouver, Canada, July 30 - August 4, Volume
  • Antani SK, You D, Simpson M, Rahman M, Demner-Fushman D, Thoma GR. The role of image modality and visual characteristics in archiving biomedical images. Proc of IS&T Archiving Conference. Volume 2013, Number 1, 2013, pp. 31-35.
  • Simpson MS, You D, Rahman MM, Antani SK, Thoma GR, Demner-Fushman D. Towards the creation of a visual ontology of biomedical imaging entities. AMIA Annu Symp Proc. 2012;2012:866-75. Epub 2012 Nov 3.
  • Mrabet Y, Kilicoglu H, Demner-Fushman D. Unsupervised Ranking of Knowledge Bases for Named Entity Recognition. ECAI 2016, The Hague, The Netherlands, 1248-1255.
  • Mao S, Nie L, Thoma GR. Unsupervised Style Classification of Document Page Images Proc IEEE International Conference on Image Processing, September 2005, Genova, Italy; Vol. II: 510-13
  • Misra D, Thoma GR. Use of descriptive metadata as a knowledgebase for analyzing data in large textual collections. Proc. IS&T Archiving 2013. Washington D.C. Proc. IS&T Archiving 2013. Washington D.C. pg 193-199.
  • De Herrera A, Schaer R, Antani SK, Müller H. Using Crowdsourcing for Multi-label Biomedical Compound Figure Annotation. In: Carneiro G. et al. (eds) Deep Learning and Data Labeling for Medical Applications. LABELS 2016, DLMIA 2016. Lecture Notes in Computer Science, vol 10008. Springer, Cham
  • Kim J, Lobuglio PS, Thoma GR. Visualization of Statistics from MEDLINE. 2016 IEEE 29th International Symposium on Computer-Based Medical Systems (CBMS 2016), Dublin and Belfast, Ireland, pp. 290-291, June, 2016.
  • Ben Abacha A, Hasan SA, Datls W, Liu J, Demner-Fushman D, Muller H. VQA-Med: Overview of the medical visual question answering task at imageclef 2019. CEUR Workshop Proceedings, 9-12, 2019.
  • Walker FL, Thoma GR. Web-Based Document Image Processing Proc. SPIE: Internet Imaging. 2000 Jan;:268-77.

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