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  • Felts RL, Bennett A, Shi D, Freed E, Lifson J, Lowekamp B, Yoo TS, Bliss D, Subramaniam S. 3D Imaging of HIV transmission and entry using electron tomography and ion-abrasion scanning electron microscopy. Three Dimensional Electron Microscopy: Technical Advances and Recent Breakthroughs in 3DEM. Gordon Research Conference; 2008 Jun 15-20; Lucca (Barga), Italy.
  • Xue Z, Bryant B, Long LR, Sari-Sarraf H, Thoma GR, Wachtel M. A Client-Server Tool for Automatic Fast GPU-based Detection of Squamous Epithelium Tissue Regions in Histology Images [Poster]. RSNA 2014. Chicago, USA, Nov 30-Dec 5, 2014
  • Karargyris A, Candemir S, Jaeger S, Xue Z, Antani SK, Thoma GR. A Combined Approach for Lung Boundary Segmentation of Chest X-Ray Images [Poster]. NIH Intramural Research Festival, Bethesda MD, November 6-8, 2013.
  • Simpson M, Ford G, Antani S, Demner-Fushman D, Thoma GR. A Lightweight Statistics Package for Interactive Publications Poster at 20th NIH Research Festival (TECH-15), September 2007, National Institutes of Health
  • Xue Z, Jaeger S, Karargyris A, Candemir S, Antani SK, Long LR, Thoma GR, McDonald CJ. A System for Automated Screening for Tuberculosis using Digital Chest X-rays for Resources-Constrained Regions [Poster]. NIH Intramural Research Festival, Bethesda MD, November 6-8, 2013.
  • Callaghan F, Demner-Fushman D, Abhyankar S, McDonald CJ. Addressing errors in a retrospective observational ICU database [poster]. AMIA 2011 Fall Symposium.
  • Cheng W, Pearson G. Algorithm Developed To Make More Reliable Links To Better Photographic Views of Nursing Homes For Prototype "Nursing Home Screener" Web Site. Poster Section III at NIH Research Festival (TECH-3). National Institutes of Health October 2008. Bethesda, MD. October 2008.
  • Rahman MM, Antani SK, Demner-Fushman D, Thoma GR. An Interactive Region-Of-interest (ROI)- Based Image Retrieval Approach of Biomedical Articles in a Local Concept- Based Feature Space [Poster]. NIH Intramural Research Festival, Bethesda MD, November 6-8, 2013.
  • Van Der Volgen J, Harris BR, Demner-Fushman D. Analysis of Consumer Health Questions for Development of Question-Answering Technology [Poster]. Proceedings of One HEALTH: Information in an Interdependent World, the 2013 Annual Meeting and Exhibition of the Medical Library Association (MLA), 2013.
  • Thoma GR. Anatomic Images for the Public May 2003 Technical Report to the LHNCBC Board of Scientific Counselors.
  • Fung KW. API: RxTerms
  • Fung KW. Applied Medical Terminology Research April 2009 Technical Report to the LHNCBC Board of Scientific Counselors.
  • Lure F, Jaeger S, Cheng G, Li H, Lu P, Yu W, Kung J, Guan Y. Applying Multi-modality Artificial Intelligence for Screening of Tuberculosis in a TB High-burden Large Rural Region in China TBScience, 50th Union World Conference on Lung Health, Hyderabad, India.
  • Antani SK. Automated Detection of Lung Diseases in Chest X-Rays April 2015 Technical Report to the LHNCBC Board of Scientific Counselors
  • Yang F, Poostchi M, Silamut K, Maude RJ, Jaeger S, Thoma G. Automated Parasite Classification of Malaria on Thick Blood Smears. ASTMH 67th Annual Meeting, New Orleans, LA, Oct. 28 – Nov. 1, 2018.
  • Yu H, Yang F, Silamut R, Maude S, Jaeger S, Antani SK. Automatic Blood Smear Analysis with Artificial Intelligence and Smartphones. ASTMH 68th Annual Meeting, Washington DC, Nov. 20-24, 2019.
  • Rodriguez L, Huser V, Bodenreider O, Cimino J. Automatic coding of Free-Text Medication Data recorded by Research Coordinators [Poster]. AMIA Annu Symp Proc 2014:1565.
  • Folio, L, Sigelman, J, Wang, Y, Lu, P, Antani SK, Jaeger S. Automatic Identification and Classification of Tuberculosis Findings on Chest Radiographs for Global Surveillance Programs [Abstract]. Annual Meeting of the American Roentgen Ray Society (ARRS)
  • Jaeger S, Karargyris A, Antani SK, Thoma GR. Automatic Screening For Lung Diseases In Chest Radiographs: a Global Health Initiative [Poster].. NIH Research Festival. October 2012.
  • Thoma GR, Le DX, Kim I, Kim JW, Moon C, Tran L, Zou J. Automation to Accelerate the Production of MEDLINE April 2008 Technical Report to the LHNCBC Board of Scientific Counselors.
  • Fung K, Scichilone R, Giannangelo K. Benefits and Use Cases of a SNOMED CT to ICD-10 Map. AMIA Annu Symp Proc 2010: 1049.
  • Thoma GR, Long LR, Antani S. Biomedical Imaging R and D: Advanced Tools for Cancer Research September 2009 Technical Report to the LHNCBC Board of Scientific Counselors.
  • Thoma GR, Long LR, Antani S. Biomedical Imaging Research and Development: Knowledge from Images in the Medical Enterprise September 2006 Technical Report to the LHNCBC Board of Scientific Counselors.
  • Candemir S. Chest X-ray Screening System: Segmentation Module – v3
  • Lu C, Payne A, Demner-Fushman D. Classification Types: A New Feature in the SPECIALIST Lexicon. AMIA Fall Symposium, 2019.
  • Demner-Fushman D, Antani SA, Simpson M, Rahman MM. Combining Text and Visual Features for Biomedical Information Retrieval and Ontologies. September 2010 Technical Report to the LHNCBC Board of Scientific Counselors.
  • Karargyris A, Folio L, Siegelman J, Callaghan FM, Candemir S, Xue Z, Lu P-X, Wang Y, Antani SK, Thoma GR, Jaeger S. Comparing the Performance of Man and Machine for TB Screening in Chest Radiographs [Poster]. NIH Intramural Research Festival, Bethesda MD, November 6-8, 2013.
  • Schuette P, Callaghan F, Rochester CG. Confidence intervals for binomial proportions with applications to product safety signaling in drug exposure registries [Abstract]. Proc 2011 Joint Statistical Meetings. 2011 July 30.
  • Demner-Fushman D, Kilicoglu H, Roberts K, Masterton K, Deardorff A. Consumer Health Question Answering to Automatically Support NLM Customer Services September2015 Technical Report to the LHNCBC Board of Scientific Counselors
  • De Herrera A, Long LR, Antani SK. Content–based fMRI activation maps retrieval [Poster]. BIH 2016: Brain Informatics and Health pp 173-180, October 13-16, 2016.
  • Winnenburg R, Bodenreider O. Coverage of human phenotypes in SNOMED CT [Poster]. SNOMED CT Implementation Showcase, 2014.
  • Demner-Fushman D, Kilicoglu H. Dataset: CHQA Named Entity Dataset
  • McDonald CJ, Abhyankar S, Taft L. Dataset: common units of measure - subset of the Unified Code for Units of Measure.
  • Fung KW. Dataset: CORE problem list of SNOMED CT.
  • Fung KW. Dataset: ICD-9-CM to SNOMED CT Map
  • Abhyankar S, Goodwin RM, Zuckerman AE, McDonald CJ. Dataset: newborn screening LOINC codes (AHIC panel).
  • Abhyankar S, Goodwin RM, Zuckerman AE, McDonald CJ. Dataset: Newborn screening LOINC panel.
  • Abhyankar S, Goodwin RM, Zuckerman A, McDonald CJ. Dataset: newborn screening results annotated example HL7 electronic message guidance (v 5.2).
  • Fung KW. Dataset: Nursing Problem List Subset of SNOMED CT
  • Demner-Fushman D, Roberts K. Dataset: Question Decomposition Data
  • Demner-Fushman D, Roberts K. Dataset: Question Type Data
  • Fung KW. Dataset: SNOMED CT route of administration subset.
  • Fung K. Dataset: SNOMED CT to ICD-10 Cross Map
  • Fung K. Dataset: SNOMED CT to ICD-10-CM Map
  • Kilicoglu H. Dataset: Structured Drug Product Label (SPL) Coreference Dataset
  • Moallem G, Poostchi M, Yu H, Palaniappan N, Silamut K, Maude RJ, Hossain Md Amir, Jaeger S, Antani SK, Thoma GR. Detecting and Segmenting White Blood Cells in Microscopy Images of Thin Blood Smears [Poster]. Annual Meeting of the American Society of Tropical Medicine & Hygiene (ASTMH), Poster, 2017
  • You D, Antani SK, Demner-Fushman D, Thoma GR. Does figure-text improve biomedical image retrieval [Poster]. NIH Intramural Research Festival, Bethesda MD, November 6-8, 2013.
  • Mao Y, Fung K, Demner-Fushman D. Drug-drug Interaction Extraction via Transfer Learning. AMIA Fall Symposium, 2019.
  • Roberts K, Cahan A, Demner-Fushman D. Error Propagation in EHRs via Copy/Paste: An Analysis of Relative Dates [Poster]. Proceedings of the American Medical Informatics Association Fall Symposium (AMIA), Washington, D.C., Nov 15-19, 2014.
  • Savery M, Huston M, Mork JG, Printseva O, Rae A, Schmidt S, Demner-Fushman D. Evaluation of System for Selective Indexing Classification. AMIA Fall Symposium, 2019.
  • Rance B, Demner-Fushman D, Rindflesch TC, Bodenreider O. Exploring Automatic Approaches to Extracting Pharmacogenomic Information from the Biomedical Literature Proceedings of the 2011 PSB Workshop on Mining the Pharmacogenomics Literature 2011
  • Demner-Fushman D, Abhyankar S, Callaghan FM, McDonald CJ. Extracting sources of admission and discharge destinations from discharge summaries [Poster]. AMIA 2011 Fall Symposium.
  • Zhu VJ, Fung K. Extraction and Comparison of Drug Class Information From Standard Terminologies. AMIA Annu Symp Proc. November 2010:1327.
  • Borovikov E, Lingappa G. Face matching in Lost Person Finder Project. CEB Technical Report. January 2012.
  • Borovikov E, Bonifant MC, Lingappa G, Gill MJ, Thoma GR. FaceMatch: a visual search system for family reunification during disasters [Poster]. NIH Research Festival, September 2016
  • Borovikov E. FaceMatch: visual search for pictures of missing persons during a disaster event. NIH Research Festival. October 2012.
  • Borovikov E, Vajda S, Lingappa G, Candemir S, Antani SK, Gill MJ, Thoma GR. FaceMatch: visual search of missing persons during a disaster event [Poster]. NIH Intramural Research Festival, Bethesda MD, November 6-8, 2013.
  • Bryant B, Sari-Sarraf H, Wachtel M, Long LR, Antani SK. Fast GPU-based segmentation of H&E stained squamous epithelium from multi-gigapixel tiled virtual slides [Poster]. Proc. SPIE 8676, Medical Imaging 2013: Digital Pathology, 86760X (March 29, 2013); doi:10.1117/12.2007800
  • Rodriguez L, Demner-Fushman D. Finding Understudied Disorders Potentially Associated withMaternal Morbidity and Mortality AMIA Informatics Summit, March 2019.
  • Srinivasan B, Antani S, Demner-Fushman D, Thoma GR. Identification and Segmentation of Multi-Panel Images in Biomedical Journal Articles [Poster]. Poster at 20th NIH Research Festival (BIOINFO-1), September 2007, National Institutes of Health
  • Jao CS, Fung KW, Demner-Fushman D. Identifying indications for drugs in drug package inserts. AMIA Annual Symposium Proceedings 2010. November 2010
  • Thoma GR, Antani S, Ford GL, Chung M, Vasudevan K. Interactive Publications Research: A Report to the Board of Scientific Counselors September 2005 Technical Report to the LHNCBC Board of Scientific Counselors.
  • Li J, Demner-Fushman D, Thoma GR. Localizing Text and Symbols in Images from Biomedical Journal Articles Poster at 20th NIH Research Festival (BIOINFO-6), September 2007, National Institutes of Health
  • Jaeger S. Malaria Datasets
  • Jaeger S, Antani SK, Rajaraman S, Yang F, Yu H. Malaria Screening: Research into Image Analysis and Deep Learning. Report to the Board of Scientific Counselors September 2018.
  • Hauser SE, Demner-Fushman D, Ford GL, Nguyen TQ, Thoma GR. MD on Tap: Point of Care Information Delivery; A Report to the Board of Scientific Counselors September 2005 Technical Report to the LHNCBC Board of Scientific Counselors.
  • Fung K. Medical Terminologies in Action Technical Report to the LHNCBC Board of Scientific Counselors September 2017
  • Cho D, Mork JG, Aronson A, Demner-Fushman D, Schmidt S, Ozga D, Pash J, Kilbourne J. MeSH on demand: an easy way to identify relevant MeSH terms and related articles from text [Poster]. National Cancer Institute (NCI) Symposium "RNA Biology 2015".
  • Pearson G. Methods to Store Metadata within Motion JPEG 2000 Files. Technical Report Preprint. May 2005.
  • Abhyankar S, Demner-Fushman D, Callaghan F, Leishear K, McDonald CJ. MIMIC-II: a database of 30,000+ patients for ICU research. NIH Intramural Research Festival, Bethesda MD, October 9-12, 2012.
  • Altemus AR. Mobile App: Native Voices: Native Peoples' Concepts of Health and Illness
  • Gill MJ, Pearson G, Neve L, Miernicki G, Antani SK, Thoma GR. Mobile App: ReUnite iOS app
  • Thoma GR. Mobile App: Turning the Pages
  • Kingsland LC . NLM Gateway; A Report to the Board of Scientific Counselors May 2005 Technical Report to the LHNCBC Board of Scientific Counselors.
  • Demner-Fushman D, Mork JG. NLM Medical Text Indexer Technical Report to the LHNCBC Board of Scientific Counselors April 2016
  • Kesav N, Yang Q, Losert W, Kim J, Jaeger S, Sen HN. Novel automated processing techniques of fluorescein angiography (FA) images in patients with Uveitis. Annual Meeting of the Association for Research in Vision and Ophthalmology (ARVO).
  • Demner-Fushman D, Antani SK, Chachra S, Kushnir M, Gayen S. Open-i Imaging informatics, natural language processing and multi-modal information retrieval - research and development Technical Report to the LHNCBC Board of Scientific Counselors September 2016
  • Ruiz A, Allette K, Francis D, Lamping E, Jaeger S, Folio L, Apolo A. Patterns of soft tissue metastasis in patients with urothelial carcinoma using tumor volume heatmaps [Poster]. NIH Summer Research Program Poster Day, Aug 6, 2015
  • Kwon J, Burke DJ, Wang A, Boudreau HE, Lekstrom KJ, Korzeniowska A, Kim YS, Li L, Bunyak F, Jaeger S, Palaniappan K, Ambruso DR, Jackson SH, Leto TL. Peroxiredoxin 6 (Prdx6) supports NADPH oxidase1 (Nox1)-based reactive oxygen species generation and cell migration: collaboration of oxidant generating and scavenging systems [Poster]. NIH Research Festival 2014.
  • Bhupatiraju R, Huser V, Fung K. Phenotype modelling tools utilizing standardized EHR data in a Common Data Model format [Poster]. NIH Research Festival 2017.
  • Thorne AE, Bangalore A, Browne AC. Plug-and-play UMLS Knowledge Source Server using Web services and portlets. AMIA Annu Symp Proc. 2006:1121.
  • Jaeger S, Silamut K, Yu H, Poostchi Mohammadabadi M, Ersoy I, Powell A, Liang Z, Hossain M, Antani SK, Palaniappan K, Maude R, Thoma GR. Reducing the Diagnostic Burden of Malaria Using Microscopy Image Analysis and Machine Learning in the Field [Poster]. Annual Meeting of the American Society of Tropical Medicine & Hygiene (ASTMH), Atlanta, USA, 2016.
  • Gordon, E, Ersoy, I, Jaeger S, Waisberg, M, Pena, M, Thoma GR, Antani SK, Pierce, S, Palaniappan, K. Retinal Microcirculation Dynamics During an Active Malarial Infection [Poster]. Annual Meeting of the American Society of Tropical Medicine and Hygiene (ASTMH), 2014.
  • Narum R, Zou J, Antani SK. Semi-Automated Ground-Truth Data Collection and Annotation for Journal Figure Analysis [Poster]. 2016 NIH Research Festival
  • Fung K, Berglund D, Scichilone R, Brear H, Giannangelo K. SNOMED CT to ICD-10 map development process diagram. Meeting of the WHO Collaborating Centers for the Family of International Classifications. October 2009.
  • Neve L, Long LR, Antani SK. Software: Boundary Marking Tool 2 (BMT2)
  • Thoma GR, Ford G, Demner-Fushman D, Antani SK, Chung M. Software: Panorama
  • Huser V, Taft L, Cimino J. Suitability of LOINC document ontology as a reference terminology for clinical document types: a case report of a research-oriented EHR. NIH Poster Day 2012.
  • Gordon E, Waisberg M, Ersoy I, Pena M, Jaeger S, Pierce S. The eye as a window to investigate the CNS microvasculature during a dynamic malaria infection (Abstract). Third Annual Seminar on Molecular Imaging of Infectious Diseases, September 23, 2013.
  • Moore SR, Parascandola J. The Other Pharmacists in the American Civil War Am J Health Syst Pharm. 2000 Jul 1;57(13):1276.
  • Rodriguez L, Morrison SM, Greenberg K, Demner-Fushman D. Towards Automatic Discovery of Genes Related to Human Placenta [Poster]. Poster Fall AMIA 2016.
  • Antani SK. Tuberculosis Chest X-ray Image Data Sets
  • Callaghan FM. Tutorial: Biostatistics 101: introduction to power and sample size.
  • Sneiderman CA, Demner-Fushman D, Fung KW, Bray B. UMLS-based Automatic Image Indexing. AMIA Annu Symp Proc; 2008 Nov 8-12; Washington DC. p. 1141.
  • Bangalore A, Browne AC, Divita G. UMLSKS SUGGEST: an auto-complete feature for the UMLSKS interface using AJAX. AMIA Annu Symp Proc. 2006:851.
  • Abhyankar S, Callaghan FM, Demner-Fushman D, McDonald CJ. Using informatics tools to study obesity and outcomes after critical illness. NLM Informatics Training Conference 2011, National Institutes of Health (NIH) Campus, Natcher Conference Center, Bethesda, MD, June 28-30, 2011.
  • Fung KW. Web Interface: I-Magic SNOMED-CT to ICD-10-CM code mapping tool.
  • Lingappa G, Thoma GR, Antani SK. Web Interface: MyMorph
  • Demner-Fushman D, Antani SK, Simpson M. Web Interface: Open-I
  • Zhu Y, Long LR, Antani S, Xue Z, Thoma GR. Web-based STAPLE for Quality Estimation of Multiple Image Segmentations Poster at 20th NIH Research Festival (IMAG-12), September 2007, National Institutes of Health
  • Moallem G, Jaeger S, Poostchi M, Palaniappan N, Yu H, Silamut K, Maude RJ, Antani SK, Thoma GR. White Blood Cell Detection and Segmentation in Microscopy Images of Thin Blood Smears [Poster]. NIH Research Festival, Poster, 2017