• Ionescu B, Müller H, Péteri R, Dang-Nguyen DT, Zhou L, Piras L, Riegler M, Halvorsen P, Tran MT, Lux M, Gurrin C, Chamberlain J, Clark A, Campello A, de Herrera AGS, Ben Abacha A, Datla VV, Hasan SA, Liu J, Demner-Fushman D, Pelka O, Friedrich CM, Cid YD, Kozlovski S, Liauchuk V, Kovalev V, Berari P, Brie P, Fichou D, Dogariu M, Stefan L, Constantin M. ImageCLEF 2020: Multimedia Retrieval in Lifelogging, Medical, Nature, and Internet Applications. ImageCLEF 2020: Multimedia Retrieval in Lifelogging, Medical, Nature, and Internet Applications. ECIR (2) 2020: 533-541.

  Abstract | URL:  https://link.springer.com/chapter/10.1007/978-3-030-45442-5_69

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• Sornapudi S, Brown G, Xue Z, Long LR, Allen L, Antani SK. Comparing Deep Learning Models for Multi-cell Classification in Liquid- based Cervical Cytology Image. AMIA Annu Symp Proc. 2019; 2019: 820–827.

  Abstract | PMID:  32308878 | PMCID:  PMC7153123

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• Zou J, Xue Z, Brown G, Long LR, Antani SK. Deep learning for nuclei segmentation and cell classification in cervical liquid based cytology. Proc. SPIE 11318, Medical Imaging 2020: Imaging Informatics for Healthcare, Research, and Applications, 1131811 (2 March 2020); doi: 10.1117/12.2549547

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• Yang F, Quizon N, Silamut K, Maude RJ, Jaeger S, Antani SK. Cascading YOLO: Automated Malaria Parasite Detection for Plasmodium Vivax in Thin Blood Smears. To be presented at SPIE Medical Imaging, Feb.18-20, 2020, Houston, USA.

  Abstract | Final Paper_SPIE_Feng Yang_Final.pdf

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• Sarrouti M, Quatik EL, Alaoui S. SemBioNLQA: A semantic biomedical question answering system for retrieving exact and ideal answers to natural language questions. Artif Intell Med. 2020 Jan;102:101767. doi: 10.1016/j.artmed.2019.101767. Epub 2019 Nov 28.

  Abstract | PMID:  31980104

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• Goodwin T, Demner-Fushman D. Deep Learning from Incomplete Data: Detecting Imminent Risk of Hospital-acquired Pneumonia in ICU Patients. Proceedings of the AMIA 2019 Annual Symposium, Washington, DC, USA, November 17-20, 2019.

  Abstract | pub9980.pdf

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• Zeiss CJ, Donwook S, Vander Wyk B, Beck AP, Zatz N, Sneiderman CA, Kilicoglu H. Menagerie: A text-mining tool to support animal-human translation in neurodegeneration research. PLoS One. 2019 Dec 17;14(12):e0226176. doi: 10.1371/journal.pone.0226176. eCollection 2019.

  Abstract | PMID:  31846471 | PMCID:  PMC6917268

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• Ben Abacha A, Hasan SA, Datls W, Liu J, Demner-Fushman D, Muller H. VQA-Med: Overview of the medical visual question answering task at imageclef 2019. CEUR Workshop Proceedings, 9-12, 2019.

  Abstract | pub9992.pdf

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• Mrabet Y, Demner-Fushman D. On Agreements in Visual Understanding. 2019 Conference on Neural Information Processing Systems. 2019 Conference on Neural Information Processing Systems, December 8-14, 2019. Vancouver, Canada.

  Abstract | pub9983.pdf

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• Lu C, Payne A, Demner-Fushman D. Classification Types: A New Feature in the SPECIALIST Lexicon MIA 2019 Annual Symposium, Washington, DC, November 16-20, 2019.

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• Lu C, Aronson AR, Shooshan SE, Demner-Fushman D. Spell checker for consumer language (CSpell) Journal of the American Medical Informatics Association, Volume 26, Issue 3, 1 March 2019, Pages 211-218, https://doi.org/10.1093/jamia/ocy171 21 January 2019 (Editor's Choice)

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• Rae A, Savery M, Mork JG, Demner-Fushman D. A High Recall Classifier for Selecting Articles for MEDLINE Indexing. AMIA Fall Symposium, 2019.

  Abstract | pub9984.pdf

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• Yang F, Yu H, Silamut K, Maude RJ, Jaeger S, Antani SK. Parasite Detection in Thick Blood Smears Based on Customized Faster-RCNN. Proceedings of AIPR2019, Washington DC, USA, Oct 15-17, 2019.

  Abstract | pub10004.pdf

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• Yang F, Yu H, Silamut K, Maude R, Jaeger S, Antani SK. Smartphone-Supported Malaria Diagnosis Based on Deep Learning. Proceedings of 10th Workshop on Machine Learning in Medical Imaging (MLMI 2019) in conjunction with MICCAI, Shenzhen, China, Oct 13-17, 2019.

  Abstract | URL:  https://link.springer.com/chapter/10.1007/978-3-030-32692-0_9

  AbstractExternal link
• Yang F, Yu H, Silamut K, Maude RJ, Jaeger S, Antani SK. Smartphone-Supported Malaria Diagnosis Based on Deep Learning. In: Suk HI., Liu M., Yan P., Lian C. (eds) Machine Learning in Medical Imaging. MLMI 2019. Lecture Notes in Computer Science, vol 11861. Springer, Cham.

  Abstract | pub10001.pdf

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• Zou J, Antani SK, Thoma G. Unified Deep Neural Network for Segmentation and Labeling of Multi-Panel Biomedical Figures Journal of the Association for Information Science and Technology (JASIST), 2019

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• Zou J. Unified Deep Neural Network for Segmentation and Labeling of Multi-Panel Biomedical Figures Journal of the Association for Information Science and Technology (JASIST), 2019

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• Demner-Fushman D, Mrabet Y, Ben Abacha A. Consumer health information and question answering: helping consumers find answers to their health-related information needs. JAMIA, 2019.

  Abstract | PMID:  31592532 | URL:  https://doi.org/10.1093/jamia/ocz152

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• Rosemblat G, Fiszman, M, Shin D, Kilicoglu H. Towards a characterization of apparent contradictions in the biomedical literature using context analysis. Journal of Biomedical Informatics. 2019. In Press. https://doi.org/10.1016/j.jbi.2019.103275.

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• Ben Abacha A, Mrabet Y, Sharp M, Goodwin T, Shooshan S, Demner-Fushman D. Bridging the Gap Between Consumers’ Medication Questions and Trusted Answers. Stud Health Technol Inform. 2019 Aug 21;264:25-29. doi: 10.3233/SHTI190176.

  Abstract | pub9965.pdf

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• Kho SU, Sheth A, Bodenreider O. Automatic Identification of Individual Drugs in Death Certificates. Stud Health Technol Inform. 2019 Aug 21;264:183-187. doi: 10.3233/SHTI190208.

  Abstract | PMID:  31437910

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• Vasilakes J, Fan Y, Rizvi R, Bompelli A, Bodenreider O, Zhang R. Normalizing Dietary Supplement Product Names Using the RxNorm Model. Stud Health Technol Inform. 2019 Aug 21;264:408-412. doi: 10.3233/SHTI190253.

  Abstract | PMID:  31437955 | PMCID:  PMC6792000

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• Rajaraman S, Candemir S, Xue Z, Alderson P, Thoma G, Antani SK. A Novel Stacked Model Ensemble for Improved TB Detection in Chest Radiographs. In Santosh KC et al. (Eds.). Medical Imaging: Artificial Intelligence, Image Recognition, and Machine Learning Techniques. (pp. 1-26). New York, NY: CRC Press, Taylor & Francis Group.

  Abstract | pub9960.pdf

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• Divita G, Rosemblat G, Browne AC. Building a medical Spanish lexicon. AMIA Annu Symp Proc. 2007 Oct 11:941.

  Abstract | PMID:  18694041

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• Ben Abacha A, Shivade C, Demner-Fushman D. Overview of the MEDIQA 2019 Shared Task on Textual Inference, Question Entailment and Question Answering. Proceedings of the 18th BioNLP Workshop and Shared Task, Florence, Italy, August 1, 2019.

  Abstract | pub9964.pdf

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