• McDonald CJ, Maglott D, Abhyankar S, Goodwin RM, Kanduru A, Lu S, Lynch P, Vreeman D, Wang Y, Wood G. US Realm, Chapter 14, Use Case – Clinical Genomics Code Systems. in HL7 Version 2.5.1 Implementation Guide: Lab Results Interface (LRI), DTSU3. HL7 International (Ann Arbor).

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• McDonald CJ, Maglott D, Abhyankar S, Goodwin RM, Kanduru A, Lu S, Lynch P, Vreeman D, Wang Y, Wood G. US Realm, Chapter 5, Use Case – Clinical Genomics Results Reporting in HL7 Version 2.5.1 Implementation Guide: Lab Results Interface (LRI), DTSU3. HL7 International (Ann Arbor).

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• McDonald CJ. Logical Observation Identifiers Names and Codes for In Vitro Diagnostic Test; Guidance for Industry and Food and Drug Administration Staff. Silver Spring, Md: Center for Devices and Radiological Health, FDA, 2018.

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• Tang P, McDonald CJ. Computer-Based Patient-Record Systems - Chapter 9. In Shortliffe E, Perreault L, eds. Medical Informatics. New York: springer. 2001:327-358. DOI: 10.1007/978-0-387-21721-5_9.

  Abstract | pub9718.pdf

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• Narum R, Zou J, Antani SK. Semi-Automated Ground-Truth Data Collection and Annotation for Journal Figure Analysis [Poster]. 2016 NIH Research Festival

  Abstract | pub9435.pdf

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• Wang Y, Lynch P, Kanduru A, Hook J, Mericle L, Ludet C, Vreeman D, McDonald CJ. LHC-Forms and Related Widgets for Capturing and Tuning Health Data [Poster] AMIA Annual Symposium, Chicago IL

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• Rodriguez L, Morrison SM, Greenberg K, Demner-Fushman D. Towards Automatic Discovery of Genes Related to Human Placenta [Poster]. Poster Fall AMIA 2016.

  Abstract | pub9451.pdf

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• Kayaalp M, Browne AC, Dodd ZA, Sagan P, McDonald CJ. An Easy-to-Use Clinical Text De-identification Tool for Clinical Scientists: NLM Scrubber [Poster]. Proceedings of the Annual American Medical Informatics Association Fall Symposium: 1522.

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• Sorbello A, Ripple AM, Bodenreider O. A pilot study to support prospective detection of emerging adverse drug events [Poster]. AMIA Annu Symp Proc 2015:1699.

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• Szolovits P, Aberdeen J, Meystre S, Kayaalp M. Panel on: State of the Art of Clinical Narrative Report De-Identification and Its Future [Poster]. Proceedings of the Annual American Medical Informatics Association Fall Symposium: 240–242.

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• Amini S, Kilicoglu H, Hooft L, ter Riet G. Are we expressing uncertainty of our claims enough? Towards automatic detection of overstatement of claims [Poster]. 2015. World Conference on Research Integrity (WCRI).

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• Roberts K, Cahan A, Demner-Fushman D. Error Propagation in EHRs via Copy/Paste: An Analysis of Relative Dates [Poster]. Proceedings of the American Medical Informatics Association Fall Symposium (AMIA), Washington, D.C., Nov 15-19, 2014.

  Abstract | pub8973.pdf | URL:  http://knowledge.amia.org/56638-amia-1.1540970/t-005-1.1543914/f-005-1.1543915/a...

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• McDonald CJ, Tang PC, Hripcsak G. Electronic Health Record Systems. . In: Shortliffe EH, Cimino JJ, editors. Biomedical Informatics: Computer Applications in Healthcare and Biomedicine 4th ED [Internet]. London: Springer London; 2014. p. 391–421. Available from: http://link.springer.com/10.1007/978-1-4471-4474-8.

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• Bodenreider O. Disease Ontologies In: Dubitzky W, Wolkenhauer O, Cho K-H, Yokota H, editors. Encyclopedia of Systems Biology: Springer; 2013. p. 578-581.

  Abstract | pub2011017.pdf

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• Peters L, Nguyen T, Bodenreider O. Displaying drug classes in RxNav [Poster]. AMIA Annu Symp Proc, 2013: p. 1134.

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• Bodenreider O, Nguyen D, Chiang P, Chuang P, Madden M, Winnenburg R, McClure R, Emrick S, D'Souza I. The NLM value set authority center (Poster). Stud Health Technol Inform. 2013;192:1224.

  Abstract | PMID:  23920998 | PMCID:  PMC4300102

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• Fung KW, Bodenreider O. Knowledge representation and ontologies. Richesson RL, Andrews JE (Eds.). Clinical Research Informatics, Health Informatics, DOI 10.1007/978-1-84882-448-5_14, Springer-Verlag London Limited Publishing 2012.

  Abstract | pub2012015.pdf

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• Peters L, Nguyen T, Bodenreider O. RxBatch – Batch operations for RxNorm and NDF-RT APIs (Poster). AMIA Annu Symp Proc, 2012: p. 1897.

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• Bodenreider O. API: Prescribable

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• Abhyankar S, Demner-Fushman D, Callaghan F, Leishear K, McDonald CJ. MIMIC-II: a database of 30,000+ patients for ICU research. NIH Intramural Research Festival, Bethesda MD, October 9-12, 2012.

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• Huser V, Taft L, Cimino J. Suitability of LOINC document ontology as a reference terminology for clinical document types: a case report of a research-oriented EHR. NIH Poster Day 2012.

  Abstract | pub2012-072.pdf

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• Bodenreider O. Web Interface: RxMix

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• Fung KW. Web Interface: I-Magic SNOMED-CT to ICD-10-CM code mapping tool.

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• Peters L, Nguyen T, Bodenreider O. An application programming interface for NDF-RT AMIA Annu Symp Proc 2011:1922

  Abstract | pub2011021.pdf

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• Demner-Fushman D, Abhyankar S, Callaghan FM, McDonald CJ. Extracting sources of admission and discharge destinations from discharge summaries [Poster]. AMIA 2011 Fall Symposium.

  Abstract | pub2011-117.pdf

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