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  • Fung KW. Dataset: Nursing Problem List Subset of SNOMED CT
  • Fung KW, McDonald C, Srinivasan S. The UMLS-CORE project: a study of the problem list terminologies used in large healthcare institutions. J Am Med Inform Assoc. 2010 Nov-Dec;17(6):675-80. doi: 10.1136/jamia.2010.007047.
  • Fung KW. API: RxTerms
  • Fung KW. Dataset: SNOMED CT route of administration subset.
  • Fung KW. Dataset: CORE problem list of SNOMED CT.
  • Fung KW. Applied Medical Terminology Research April 2009 Technical Report to the LHNCBC Board of Scientific Counselors.
  • Goss FR, Lai KH, Topaz M, Acker WW, Kowalski L, Plasek JM, Blumenthal KG, Seger DL, Slight SP, Fung KW, Chang FY, Bates DW, Zhou L. A value set for documenting adverse reactions in electronic health records. J Am Med Inform Assoc. 2018 Jun 1;25(6):661-669. doi: 10.1093/jamia/ocx139.
  • Hristovski D, Peterlin B, Mitchell JA, Humphrey SM. Using literature-based discovery to identify disease candidate genes. Int J Med Inform. March 2005;74(2-4):289-98.
  • Huang KC, Geller J, Halper M, Perl Y, Xu J. Using WordNet synonym substitution to enhance UMLS source integration. Artif Intell Med. June 2009;46(2):97-109. doi: 10.1016/j.artmed.2008.11.008. Epub 2008 Dec 30.
  • Humphrey SM, Névéol A, Gobeil J, Ruch P, Darmoni SJ, Browne AC. Comparing a Rule Based vs. Statistical System for Automatic Categorization of MEDLINE Documents According to Biomedical Specialty. J Am Soc Inf Sci Technol. 2009 Dec 1;60(12):2530-2539.
  • Humphrey SM, Rogers W, Kilicoglu H, Demner-Fushman D, Rindflesch TC. Word sense disambiguation by selecting the best semantic type based on journal descriptor indexing: preliminary experiment. J Am Soc Inf Sci Technol. January 2006;57(1):96-113.
  • Jarlenski M, Baik SH, Zhang Y. Trends in Use of Medications for Smoking Cessation in Medicare, 2007-2012. Am J Prev Med. 2016 Sep;51(3):301-8. doi: 10.1016/j.amepre.2016.02.018. Epub 2016 Mar 30.
  • Kayaalp M, Browne AC, Callaghan FM, Dodd Z, Divita G, Ozturk S, McDonald CJ. The pattern of name tokens in narrative clinical text and a comparison of five systems for redacting them. J Am Med Inform Assoc. 2014 May-Jun;21(3):423-31. doi: 10.1136/amiajnl-2013-001689. Epub 2013 Sep 11.
  • Kingsland LC . NLM Gateway; A Report to the Board of Scientific Counselors May 2005 Technical Report to the LHNCBC Board of Scientific Counselors.
  • Kury F, Cimino JJ. Identifying Repetitive Institutional Review Board Stipulations by Natural Language Processing and Network Analysis. Stud Health Technol Inform. 2015;216:579-83.
  • Marcelo A, Gavino A, Isip-Tan IT, Apostol-Nicodemus L, Mesa-Gaerlan FJ, Firaza PN, Faustorilla JF Jr., Callaghan FM, Fontelo P. A comparison of the accuracy of clinical decisions based on full-text articles and on journal abstracts alone: a study among residents in a tertiary care hospital. Evid Based Med. 2013 Apr;18(2):48-53. doi: 10.1136/eb-2012-100537. Epub 2012 Jul 10.
  • McDonald CJ, Vreeman DJ, Abhyankar S. Comment on "time to integrate clinical and research informatics" [Letter]. Sci Transl Med. 2013 Apr 3;5(179):179le1. doi: 10.1126/scitranslmed.3005700.
  • McDonald CJ, Abhyankar S, Taft L. Dataset: common units of measure - subset of the Unified Code for Units of Measure.
  • Montufar-Rueda C, Rodriguez L, Jarquin JD, Barboza A, Bustillo MC, Marin F, Ortiz G, Estrada F. Severe postpartum hemorrhage from uterine atony: a multicentric study. J Pregnancy. 2013;2013:525914. doi: 10.1155/2013/525914. Epub 2013 Dec 2.
  • Mork JG, Bodenreider O, Demner-Fushman D, Dogan RI, Lang FM, Lu Z, Névéol A, Peters L, Shooshan SE, Aronson AR. Extracting Rx information from clinical narrative. J Am Med Inform Assoc. 2010 Sep-Oct;17(5):536-9. doi: 10.1136/jamia.2010.003970.
  • Neveol A, Shooshan SE, Claveau V. Automatic Inference of Indexing Rules for MEDLINE BMC Bioinformatics. 2008 Nov 19;9 Suppl 11:S11
  • Névéol A, Shooshan SE, Humphrey SM, Mork JG, Aronson AR. A recent advance in the automatic indexing of the biomedical literature. J Biomed Inform. 2009 Oct;42(5):814-23. doi: 10.1016/j.jbi.2008.12.007. Epub 2008 Dec 30.
  • Richesson RL, Fung KW, Krischer JP. Heterogeneous but 'Standard' Coding Systems for Adverse Events: Issues in Achieving Interoperability Between Apples and Oranges Contemp Clin Trials. 2008 Sep;29(5):635-45. Epub 2008 Mar 5
  • Roberts K, Shooshan SE, Rodriguez L, Abhyankar S, Kilicoglu H, Demner-Fushman D. The role of fine-grained annotations in supervised recognition of risk factors for heart disease from EHRs. J Biomed Inform. 2015 Dec;58 Suppl:S111-9. doi: 10.1016/j.jbi.2015.06.010. Epub 2015 Jun 26.
  • Rodgers RP. Searching for biomedical information on the World Wide Web. J Med Pract Manage. 2000 May-Jun;15(6):306-13.

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