• Aronson AR, Lang FM. An overview of MetaMap: historical perspective and recent advances. J Am Med Inform Assoc. 2010 May-Jun;17(3):229-36. doi: 10.1136/jamia.2009.002733.

  Abstract | pub2010033.pdf | PMID:  20442139 | PMCID:  PMC2995713

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• Aronson AR. API: Semantic Knowledge Representation

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• Azuaje F, Wang H, Bodenreider O. Ontology-driven Similarity Approaches to Supporting Gene Functional Assessment Proceedings of the ISMB'2005 SIG meeting on Bio-ontologies 2005:9-10

  Abstract | pub2005024.pdf

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• Backer A, Bodenreider O, Karp P, Kelly H, Loranger S, Musen M, Sriram R, Wroe C. Knowledge Integration for Bio-Threat Response Los Alamos White Paper

  Abstract | pub2005035.pdf

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• Bergun A, Bodenreider O, Jacquelinet C. Issues in the Classification of Disease Instances with Ontologies Stud Health Technol Inform 2005;116:695-700

  Abstract | pub2005029.pdf | PMID:  16160339 | PMCID:  PMC1784521

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• Blake C, Rindflesch TC. Leveraging syntax to better capture the semantics of elliptical coordinated compound noun phrases. J Biomed Inform. 2017 Aug;72:120-131. doi: 10.1016/j.jbi.2017.07.001. Epub 2017 Jul 4.

  Abstract | PMID:  28687199

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• Bodenreider O, Cornet R, Vreeman DJ. Recent Developments in Clinical Terminologies - SNOMED CT, LOINC, and RxNorm. Yearb Med Inform. 2018 Aug;27(1):129-139. doi: 10.1055/s-0038-1667077. Epub 2018 Aug 29.

  Abstract | PMID:  30157516

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• Bodenreider O. Disease Ontologies In: Dubitzky W, Wolkenhauer O, Cho K-H, Yokota H, editors. Encyclopedia of Systems Biology: Springer; 2013. p. 578-581.

  Abstract | pub2011017.pdf

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• Bodenreider O. API: Prescribable

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• Bodenreider O. Web Interface: RxMix

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• Bodenreider O, Peters LB. A graph-based approach to auditing RxNorm. J Biomed Inform. 2009 Jun;42(3):558-70. doi: 10.1016/j.jbi.2009.04.004. Epub 2009 Apr 24.

  Abstract | PMID:  19394440 | PMCID:  PMC2722378

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• Bodenreider O. Biomedical Ontologies in Action: Role in Knowledge Management, Data Integration and Decision Support. Geissbuhler A, Kulikowski C, editors. IMIA Yearbook of Medical Informatics 2008. Methods Inf Med, 2008. 47(Suppl 1): p. 67-79.

  Abstract | PMID:  18660879 | PMCID:  PMC2592252

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• Bodenreider O, Smith B, Kumar A, Burgun A. Investigating Subsumption in SNOMED CT: An Exploration into Large Description Logic-based Biomedical Terminologies Artif Intell Med. 2007 Mar;39(3):183-95. Epub 2007 Jan 22

  Abstract | pub2007011.pdf | PMID:  17241777 | PMCID:  PMC2442845

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• Bodenreider O, Stevens R. Bio-ontologies: Current Trends and Future Directions Brief Bioinform. 2006 Sep;7(3):256-74. Epub 2006 Aug 9

  Abstract | pub2006053.pdf | PMID:  16899495 | PMCID:  PMC1847325

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• Bodenreider O, Nelson SJ. RxNav: A Semantic Navigation Tool for Clinical Drugs Medinfo. 2004 Sept.;2004: 1530.

  Abstract | pub2004037.pdf

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• Bodenreider O. Web Interface: RxNav

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• Bodenreider O, McCray AT. Exploring Semantic Groups Through Visual Approaches J Biomed Inform. 2003 Dec;36(6):414-432.

  Abstract | pub2003065.pdf | PMID:  14759816 | PMCID:  PMC1997308

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• Bodenreider O, Bean CA. Relationships Among Knowledge Structures: Vocabulary Integration Within a Subject Domain. In: Bean A, Green R, editors. Relationships in the organization of knowledge. Springer; 2001. pp. 81-98.

  Abstract | pub2001024.pdf

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• Burgun A, Bodenreider O. Accessing and Integrating Data and Knowledge for Biomedical Research Yearb Med Inform. 2008:91-101

  Abstract | pub2008027.pdf | PMID:  18660883 | PMCID:  PMC2553094

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• Cairelli MJ, Fiszman M, Zhang H, Rindflesch TC. Networks of neuroinjury semantic predications to identify biomarkers for mild traumatic brain injury. J Biomed Semantics. 2015 May 18;6:25. doi: 10.1186/s13326-015-0022-4. eCollection 2015.

  Abstract | PMID:  25992264 | PMCID:  PMC4436163

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• Cameron D, Kavuluru R, Rindflesch TC, Sheth AP, Thirunarayan K, Bodenreider O. Context-driven automatic subgraph creation for literature-based discovery. J Biomed Inform. 2015 Apr;54:141-57. doi: 10.1016/j.jbi.2015.01.014. Epub 2015 Feb 7.

  Abstract | PMID:  25661592 | PMCID:  PMC4888806

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• Cameron D, Bodenreider O, Yalamanchili H, Danh T, Vallabhaneni S, Thirunarayan K, Sheth AP, Rindflesch TC. A graph-based recovery and decomposition of Swanson's hypothesis using semantic predications. J Biomed Inform. 2013 Apr;46(2):238-51. doi: 10.1016/j.jbi.2012.09.004. Epub 2012 Sep 28.

  Abstract | PMID:  23026233 | PMCID:  PMC4031661

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• Cimino JJ, Hayamizu TF, Bodenreider O, Davis B, Stafford GA, Ringwald M. The caBIG terminology review process. J Biomed Inform. 2009 Jun;42(3):571-80. doi: 10.1016/j.jbi.2008.12.003. Epub 2008 Dec 25.

  Abstract | PMID:  19154797 | PMCID:  PMC2729758

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• Cohen T, Widdows D, Stephan C, Zinner R, Kim J, Rindflesch TC, Davies P. Predicting high-throughput screening results with scalable literature-based discovery methods. CPT Pharmacometrics Syst Pharmacol. 2014 Oct 8;3:e140. doi: 10.1038/psp.2014.37.

  Abstract | PMID:  25295575 | PMCID:  PMC4474167

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• Cui L, Bodenreider O, Shi J, Zhang GQ. Auditing SNOMED CT hierarchical relations based on lexical features of concepts in non-lattice subgraphs. Biomed Inform. 2018 Feb;78:177-184. doi: 10.1016/j.jbi.2017.12.010. Epub 2017 Dec 20.

  Abstract | PMID:  29274386 | PMCID:  PMC5835197

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