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Ahlers C, Fiszman M, Demner-Fushman D, Lang F, Rindflesch TC.Extracting Semantic Predications from MEDLINE Citations for Pharmacogenomics Pacific Symposium on Biocomputing 2007 12:209-220
Ahlers CB, Hristovski D, Kilicoglu H, Rindflesch TC.Using the Literature-based Discovery Paradigm to Investigate Drug Mechanisms AMIA Annu Symp Proc. 2007 Oct 11:6-10
Apostolova E, Channin DS, Demner-Fushman D, Furst J, Lytinen S, Raicu D.Automatic segmentation of clinical texts. 2009 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Minneapolis, MN, 2009, pp. 5905-5908. doi: 10.1109/IEMBS.2009.5334831
Aronson AR, Mork JG, Neveol A, Shooshan SE, Demner-Fushman D.Methodology for Creating UMLS Content Views Appropriate for Biomedical Natural Language Processing AMIA Annu Symp Proc. 2008 Nov 6:21-5
Aronson AR, Bodenreider O, Demner-Fushman D, Fung KW, Lee VK, Mork JG, Névéol A, Peters L, Rogers WJ.From indexing the biomedical literature to coding clinical text: experience with MTI and machine learning approaches. Proc 2007 Workshop BioNL'07, June 2007, pp. 105-112, Prague, Czech Republic.
Aronson AR, Demner-Fushman D, Humphrey SM, Ide NC, Kim W, Liu H, Loane RF, Mork JG, Smith LH, Tanabe LK, Wilbur WJ, Xie N.Knowledge-intensive and statistical approaches to the retrieval and annotation of genomics MEDLINE citations. The Thirteenth Text Retrieval Conference (TREC 2004). 2004:503-11.
Ben Abacha A, Demner-Fushman D.On the role of question summarization and information source restriction in consumer health question answering. In Proceedings of the AMIA 2019 Informatics Summit, San Francisco, CA, USA, 2019.
Ben Abacha A, Demner-Fushman D.Recognizing Question Entailment for Medical Question Answering. AMIA Annu Symp Proc. 2017 Feb 10;2016:310-318. eCollection 2016.
Ben Abacha A, Demner-Fushman D.NLM_NIH at SemEval-2017 Task 3: from Question Entailment to Question Similarity for Community Question Answering. In Proceedings of the 11th International Workshop on Semantic Evaluation (SemEval@ACL) 2017: 349-352.
Ben Abacha A, Demner-Fushman D.Meta-Learning with Selective Data Augmentation for Medical Entity Recognition. International Journal of Computational Linguistics and Applications (IJCLA) 7(2): 167-182 (2016)
Cho D, Mork JG, Aronson A, Demner-Fushman D, Schmidt S, Ozga D, Pash J, Kilbourne J.MeSH on demand: an easy way to identify relevant MeSH terms and related articles from text [Poster]. National Cancer Institute (NCI) Symposium "RNA Biology 2015".
Demner-Fushman D, Fung K, Do P, Boyce R, Goodwin T.Overview of the TAC 2018 Drug-Drug Interaction Extraction from Drug Labels Track. Proceedings of the Text Analysis Conference (TAC) 2018, Gaithersburg, MD, USA, November 13-14, 2018.
Demner-Fushman D.A dataset of 200 structured product labels annotated for adverse drug reactions. Sci Data. 2018 Jan 30;5:180001. doi: 10.1038/sdata.2018.1.
Demner-Fushman D, Rogers W, Aronson A.MetaMap Lite: an evaluation of a new Java implementation of MetaMap. J Am Med Inform Assoc. 2017 Jul 1;24(4):841-844. doi: 10.1093/jamia/ocw177.
Demner-Fushman D, Mork JG, Aronson AR.Mining MEDLINE for problems associated with vitamin D. AMIA Annu Symp Proc. 2013 Nov 16;2013:300-8. eCollection 2013.
Demner-Fushman D, Abhyankar S.Syntactic-semantic frames for clinical cohort identification queries. Data Integration in the Life Sciences (DILS) June 2012, LNBI 7348 proceedings. Lecture Notes in Computer Science. 2012;7348:100-112
Demner-Fushman D, Abhyankar S.Syntactic-semantic question frames for cohort identification. The 2012 Joint Summits on Translational Science. San Francisco, CA. March 2012.
Demner-Fushman D, Mork JG, Shooshan SE, Aronson AR.UMLS content views appropriate for NLP processing of the biomedical literature vs. clinical text. J Biomed Inform. 2010 Aug;43(4):587-94. doi: 10.1016/j.jbi.2010.02.005. Epub 2010 Feb 10.
Demner-Fushman D, Lin J.Answer Extraction, Semantic Clustering, and Extractive Summarization for Clinical Question Answering Proc COLING/ACL 2006. July 2006, Sydney, Australia
Demner-Fushman D, Lin J.Situated Question Answering in the Clinical Domain: Selecting the Best Drug Treatment for Diseases Proc COLING/ACL 2006 Workshop on Task-Focused Summarization and Question Answering, July 2006, Sydney, Australia
Fiszman M, Demner-Fushman D, Kilicoglu H, Rindflesch TC.Automatic summarization of MEDLINE citations for evidence-based medical treatment: a topic-oriented evaluation. J Biomed Inform. 2009 Oct;42(5):801-13. doi: 10.1016/j.jbi.2008.10.002. Epub 2008 Nov 5.