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  • Rahman MM, Antani SK, Demner-Fushman D, Thoma GR. Biomedical image representation and classification using an entropy-weighted probabilistic concept feature space. Proc. SPIE. 9039. Medical Imaging 2014: PACS and Imaging Informatics: Next Generation and Innovations. 90390G.
  • Xue Z, You D, Antani SK, Long LR, Demner-Fushman D, Thoma GR. Classification of Visual Signs in Abdominal CT Image Figures in Biomedical Literature. Proc. SPIE. 9039. Medical Imaging 2014: PACS and Imaging Informatics: Next Generation and Innovations. 90390T.
  • You D, Antani SK, Demner-Fushman D, Thoma GR. A Contour-based Shape Descriptor For Biomedical Image Classification and Retrieval. Proceedings of SPIE 2014, Vol. 9021, Document Recognition and Retrieval XXI. February 2014;9021.
  • Bekhuis T, Tseytlin E, Mitchell KJ, Demner-Fushman D. Feature engineering and a proposed decision-support system for systematic reviewers of medical evidence. PLoS One. 2014 Jan 27;9(1):e86277. doi: 10.1371/journal.pone.0086277. eCollection 2014.
    Abstract | PMID:  24475099 | PMCID:  PMC3903545
  • Zhang R, Cairelli MJ, Fiszman M, Rosemblat G, Kilicoglu H, Rindflesch TC, Pakhomov SV, Melton GB. Using semantic predications to uncover drug-drug interactions in clinical data. J Biomed Inform. 2014 Jan 19. pii: S1532-0464(14)00005-7. doi: 10.1016/j.jbi.2014.01.004. [Epub ahead of print]
    Abstract | PMID:  24448204
  • Abhyankar S, Demner-Fushman D, Callaghan FM, McDonald CJ. Combining structured and unstructured data to identify a cohort of ICU patients who received dialysis. J Am Med Inform Assoc. 2014 Jan 2. doi: 10.1136/amiajnl-2013-001915. [Epub ahead of print]
    Abstract | PMID:  24384230
  • Zhang M, Del Fiol G, Grout RW, Jonnalagadda S, Medlin R, Mishra R, Weir C, Liu H, Mostafa J, Fiszman M. Automatic identification of comparative effectiveness research from medline citations to support clinicians' treatment information needs. Stud Health Technol Inform. 2013;192:846-50
  • Lowekamp BC, Chen DT, Ibáñez L, Blezek D. The Design of SimpleITK. Front Neuroinform. 2013 Dec 30;7:45. doi: 10.3389/fninf.2013.00045. eCollection 2013.
    Abstract | PMID:  24416015 | PMCID:  PMC3874546
  • Zhu X, Cimino JJ. Clinicians' evaluation of computer-assisted medication summarization of electronic medical records. Comput Biol Med. 2013 Dec 19. pii: S0010-4825(13)00357-0. doi: 10.1016/j.compbiomed.2013.12.006. [Epub ahead of print]
    Abstract | PMID:  24393492
  • Fontelo P, Gavino A, Sarmiento RF. Comparing data accuracy between structured abstracts and full-text journal articles: implications in their use for informing clinical decisions. Evid Based Med. 2013 Dec;18(6):207-11. doi: 10.1136/eb-2013-101272. Epub 2013 Jun 20.
    Abstract | PMID:  23786759
  • Narayan K, Danielson CM, Lagarec K, Lowekamp BC, Coffman P, Laquerre A, Phaneuf MW, Hope TJ, Subramaniam S. Multi-resolution correlative focused ion beam scanning electron microscopy: Applications to cell biology. J Struct Biol. 2013 Dec 1. pii: S1047-8477(13)00314-6. doi: 10.1016/j.jsb.2013.11.008. [Epub ahead of print]
    Abstract | PMID:  24300554
  • Rosemblat G, Shin D, Kilicoglu H, Sneiderman C, Rindflesch TC. A methodology for extending domain coverage in SemRep. J Biomed Inform. 2013 Dec;46(6):1099-107. doi: 10.1016/j.jbi.2013.08.005. Epub 2013 Aug 21.
    Abstract | PMID:  23973273 | PMCID:  PMC3844019
  • Schulz S, Balkanyi L, Cornet R, Bodenreider O. From Concept Representations to Ontologies: A Paradigm Shift in Health Informatics? Healthc Inform Res. 2013 Dec;19(4):235-242. Epub 2013 Dec 31.
    Abstract | PMID:  24523987 | PMCID:  PMC3920035
  • Karargyris A, Rondonotti E, Mandelli G, Koulaouzidis A. Evaluation of 4 three-dimensional representation algorithms in capsule endoscopy images. World J Gastroenterol. 2013 Nov 28;19(44):8028-33. doi: 10.3748/wjg.v19.i44.8028.
    Abstract | PMID:  24307796 | PMCID:  PMC3848150
  • Maver A, Hristovski D, Rindflesch TC, Peterlin B. Integration of data from omic studies with the literature-based discovery towards identification of novel treatments for neovascularization in diabetic retinopathy. Biomed Res Int. 2013;2013:848952. doi: 10.1155/2013/848952. Epub 2013 Nov 24.
    Abstract | PMID:  24350292 | PMCID:  PMC3857903
  • Cimino JJ, Ayres EJ, Remennik L, Rath S, Freedman R, Beri A, Chen Y, Huser V. The National Institutes of Health's Biomedical Translational Research Information System (BTRIS): Design, contents, functionality and experience to date. J Biomed Inform. 2013 Nov 19. pii: S1532-0464(13)00181-0. doi: 10.1016/j.jbi.2013.11.004. [Epub ahead of print]
    Abstract | PMID:  24262893
  • Abhyankar S, Demner-Fushman D. A simple method to extract key maternal data from neonatal clinical notes. AMIA Annu Symp Proc. 2013 Nov 16;2013:2-9. eCollection 2013.
    Abstract | PMID:  24551317 | PMCID:  PMC3900117
  • Cairelli MJ, Miller CM, Fiszman M, Workman TE, Rindflesch TC. Semantic MEDLINE for Discovery Browsing: Using Semantic Predications and the Literature-Based Discovery Paradigm to Elucidate a Mechanism for the Obesity Paradox. AMIA Annu Symp Proc. 2013 Nov 16;2013:164-73. eCollection 2013.
    Abstract | PMID:  24551329 | PMCID:  PMC3900170
  • Cimino JJ, Overby CL, Devine EB, Hulse NC, Jing X, Maviglia SM, Del Fiol G. Practical choices for infobutton customization: experience from four sites. AMIA Annu Symp Proc. 2013 Nov 16;2013:236-45. eCollection 2013.
    Abstract | PMID:  24551334 | PMCID:  PMC3900175
  • Culbertson A, Fiszman M, Shin D, Rindflesch TC. Semantic processing to identify adverse drug event information from black box warnings. AMIA Annu Symp Proc. 2013 Nov 16;2013:266. eCollection 2013.
    Abstract | PMID:  24551335 | PMCID:  PMC3900176
  • Demner-Fushman D, Mork JG, Aronson AR. Mining MEDLINE for problems associated with vitamin D. AMIA Annu Symp Proc. 2013 Nov 16;2013:300-8. eCollection 2013.
    Abstract | PMID:  24551339 | PMCID:  PMC3900180
  • Fontelo P, Liu F. Mobile App versus Web App: a Comparison Using 2008-2012 "PubMed for Handhelds" Server Data. AMIA Annu Symp Proc. 2013 Nov 16;2013:445-50. eCollection 2013.
    Abstract | PMID:  24551349 | PMCID:  PMC3900190
  • Huser V, Cimino JJ. Desiderata for healthcare integrated data repositories based on architectural comparison of three public repositories. AMIA Annu Symp Proc. 2013 Nov 16;2013:648-56. eCollection 2013.
    Abstract | PMID:  24551366 | PMCID:  PMC3900207
  • Mishra R, Fiol GD, Kilicoglu H, Jonnalagadda S, Fiszman M. Automatically extracting clinically useful sentences from UpToDate to support clinicians' information needs. AMIA Annu Symp Proc. 2013 Nov 16;2013:987-92. eCollection 2013.
    Abstract | PMID:  24551389 | PMCID:  PMC3900230
  • Sheets L, Liu F, Sarmiento RF, Gavino A, Fontelo P. Optimizing the txt2MEDLINE Search Portal for Low-Resource Clinical Decision Support. AMIA Annu Symp Proc. 2013 Nov 16;2013:1277-81. eCollection 2013.
    Abstract | PMID:  24551407 | PMCID:  PMC3900144

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