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  • Ackerman MJ. The Educational Value of Truly Interactive Science Publishing. J Electronic Pub. 2015 Spring:18(2). DOI:
  • Harpaz R, Odgers D, Gaskin G, DuMouchel W, Winnenburg W, Bodenreider O, Ripple AM, Szarfman A, Sorbello A, Horvitz E, White RW, Shah NH. A time-indexed reference standard of adverse drug reactions. Sci Data. 2014 Nov 11;1:140043.
    Abstract | PMID:  25632348
  • Hruby GW, Boland MR, Cimino J, Gao J, Wilcox AB, Hirschberg J, Weng C. Characterization of the biomedical query mediation process. AMIA Jt Summits Transl Sci Proc. 2013 Mar 18;2013:89-93. eCollection 2013.
    Abstract | PMID:  24303242 | PMCID:  PMC3845777
  • Hunt S, Cimino J, Koziol DE. A comparison of clinicians' access to online knowledge resources using two types of information retrieval applications in an academic hospital setting. J Med Libr Assoc. 2013 Jan;101(1):26-31. doi: 10.3163/1536-5050.101.1.005.
    Abstract | PMID:  23405044 | PMCID:  PMC3543139
  • Huser V, Cimino J. Providing pharmacogenomics clinical decision support using whole genome sequencing data as input. AMIA Jt Summits Transl Sci Proc. 2013 Mar 18;2013:81. eCollection 2013.
    Abstract | PMID:  24303303
  • Manning JD, Marciano BE, Cimino J. Visualizing the data - using lifelines2 to gain insights from data drawn from a clinical data repository. AMIA Jt Summits Transl Sci Proc. 2013 Mar 18;2013:168-72. eCollection 2013.
    Abstract | PMID:  24303258 | PMCID:  PMC3845771
  • Marceglia S, Fontelo P, Ackerman MJ. Transforming consumer health informatics: connecting CHI applications to the health-IT ecosystem. J Am Med Inform Assoc. 2015 Feb 8. pii: ocu030. doi: 10.1093/jamia/ocu030. [Epub ahead of print]
    Abstract | PMID:  25665702
  • Deckard J, McDonald CJ, Vreeman DJ. Supporting interoperability of genetic data with LOINC. J Am Med Inform Assoc. 2015 Feb 5. pii: ocu012. doi: 10.1093/jamia/ocu012. [Epub ahead of print]
    Abstract | PMID:  25656513
  • Yoo TS. Dataset: RxIMAGE database
  • Yoo TS. Dataset: SPLIMAGE database
  • Hristovski D, Dinevski D, Kastrin A, Rindflesch TC. Biomedical question answering using semantic relations. BMC Bioinformatics 2015, 16:6.
  • Zarin D, Tse T, Sheehan J. The proposed rule for U.S. clinical trial registration and results submission. N Engl J Med. 2015 Jan 8;372(2):174-80. doi: 10.1056/NEJMsr1414226. Epub 2014 Dec 24.
    Abstract | PMID:  25539444
  • Cameron D, Kavuluru R, Rindflesch TC, Sheth AP, Thirunarayan K, Bodenreider O. Context-driven automatic subgraph creation for literature-based discovery. Journal of Biomedical Informatics. [in press]
  • Candemir S, Antani SK, Jaeger SR, Thoma GR. Lung boundary detection in pediatric chest x-rays. PACS and Imaging Informatics: Next Generation and Innovations, SPIE Medical Imaging, Vol. 9418, 2015.
  • Cohen KB, Demner-Fushman D. "Biomedical Natural Language Processing"
  • Demner-Fushman D, Antani S, Kalpathy-Cramer J, Müller H. A decade of community-wide efforts in advancing medical image understanding and retrieval. Comput Med Imaging Graph. 2015 Jan;39:1-2. doi: 10.1016/j.compmedimag.2014.12.002.
    Abstract | PMID:  25572585
  • Kalpathy-Cramer J, de Herrera AG, Demner-Fushman D, Antani S, Bedrick S, Müller H. Evaluating performance of biomedical image retrieval systems-An overview of the medical image retrieval task at ImageCLEF 2004-2013. Comput Med Imaging Graph. 2015 Jan;39:55-61. doi: 10.1016/j.compmedimag.2014.03.004. Epub 2014 Mar 27.
    Abstract | PMID:  24746250 | PMCID:  PMC4177510
  • KC S, Candemir S, Jaeger S, Folio L, Karargyris A, Antani SK, Thoma GR. Automatically detecting rotation in chest radiographs using principal rib-orientation measure for quality control. Int. J. Patt. Recogn. Artif. Intell, Vol 29 No. 2. DOI: 10.1142/S021800141.5570013
  • Rahman MM, Antani SK, Demner-Fushman D, Thoma GR. A visual concept-based interactive biomedical image retrieval using entropy and spatial information. (In Press) PACS and Imaging Informatics: Next Generation and Innovations, SPIE Medical Imaging, Vol. 9418, 2015.
  • Simpson MS, You D, Rahman MM, Xue Z, Demner-Fushman D, Antani S, Thoma G. Literature-based biomedical image classification and retrieval. Comput Med Imaging Graph. 2015 Jan;39:3-13. doi: 10.1016/j.compmedimag.2014.06.006. Epub 2014 Jun 20.
    Abstract | PMID:  25016956
  • Xu T, Huang X, Kim E, Long LR, Antani SK. Multi-test cervical cancer diagnosis with missing data estimation. (In Press) Computer-Aided Diagnosis, SPIE Medical Imaging, Vol. 9414, 2015.
  • Xue Z, You D, Chachra S, Antani SK, Long LR, Demner-Fushman D, Thoma GR. Extraction of endoscopic images for biomedical figure classification. PACS and Imaging Informatics: Next Generation and Innovations, SPIE Medical Imaging, Vol. 9418, 2015. (In Press)
  • Zhang R, Adam TJ, Simon G, Cairelli M, Rindflesch TC, Pakhomov S, Melton GB. Mining biomedical literature to explore interactions between cancer drugs and dietary supplements. 2015 Joint Summits on Translational Science Proceedings.
  • Kayaalp M, Dodd Z, Browne AC, Sagan, P, McDonald CJ. Software: NLM-Scrubber
  • Vajda S. Label the many with a few: Semi-automatic medical image modality discovery in a large image collection. IEEE Symposium Series on Computational Intelligence, Orlando, FL, Dec 9-12, 2014