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PUBLICATIONS & PRESENTATION
PUBLICATIONS & PRESENTATION
Presentations
2023
Bodenreider O.
Aligning biomedical terminologies - From lexical models to supervised learning
Invited keynote presentation at the Symposium International CITADEL 2023, in Montréal, Québec,
Canada,
November 7, 2023.
[download PDF]
Bodenreider O.Categorization and classification of drugsPresentation at the National
Center for Health Statistics, meeting on "Drug Overdose Death Data: Shaping the Vision for
Using Death Certificate Literal Text
", Hyattsville, Maryland,
November 29, 2018.
[download PDF]
Bodenreider O, Huser V, Reich C.Analyzing large drug prescription datasets -- Principles, tools and examplesTutorial at the AMIA 2018 Annual
Symposium, San Francisco, California,
November 3, 2018.
[download PDF]
Bodenreider O.The role of terminologies in health data analytics through common data modelsInvited presentation at the SNOMED
InternationalOntologies for Clinical Value Symposium, in London, UK,
April 12, 2018.
[download PDF]
Bodenreider O.
RxMix -- Use of NLM drug APIs by non-programmers
Demonstration at the AMIA 2017
Annual Symposium, in Washington, D.C.,
November 6, 2017.
[download PDF]
Bodenreider O, Huser V, Reich C.Resources for analyzing drug prescription datasetsTutorial at the AMIA 2016 Annual
Symposium, Chicago, Illinois,
November 12, 2016.
[download PDF]
Bodenreider O.Ontologies support semantic interoperability in healthcare -- Two use cases in information
exchange and analyticsInvited webcast presentation at the Ontology Summit
2016 Session on Healthcare,
March 10, 2016.
[download PDF]
Bodenreider O.Interoperability between phenotypes in research and healthcare terminologies --
Investigating partial mappings between HPO and SNOMED CTWebcast organized by the IHTSDOImplementation
Special Interest Group,
March 8, 2016.
[download PDF]
Bodenreider O, Case JT, Fung KW and Willis JH.Using SNOMED CT with the UMLSTutorial at the IHTSDO October
Conference 2011, Sydney, Australia,
October 14, 2011.
[download PDF]
Peters L, Nguyen T, Bodenreider O.RxNav: Browser and Application Programming Interfaces for Drug Information
SourcesTheater-style demonstration at the AMIA 2011 Annual Symposium, Washington, DC,
November 17, 2010.
[download PDF]
Bodenreider O.Drug Information Sources: Beyond Named Entity RecognitionPanel presentation (Resources for Pharmacogenomics: Current and Future) at the AMIA Summit
on Translational Bioinformatics 2011, San Francisco,
March 8, 2011.
[download PDF]
Bodenreider O.Knowledge Representation & Ontology in the Biomedical DomainInvited presentation at the Molecular Med TRI-CON 2011, San Francisco,
February 25, 2011.
[download PDF]
Bodenreider O.RxNav: Browser and Application Programming Interfaces for RxNormTheater-style demonstration at the AMIA 2010 Annual Symposium, Washington, DC,
November 17, 2010.
[download PDF]
Bodenreider O.Present and future of biomedical ontologiesInvited presentation at the Health-e-Child Final Conference, Sestri Levante, Italy,
April 24, 2010.
[download PDF]
Bodenreider O.Provenance information in biomedical knowledge repositories - A use caseInvited presentation at the First International Workshop on the role of Semantic Web in
Provenance Management (SWPM 2009), Washington, DC,
October 25, 2009.
[download PDF]
Bodenreider O.UMLS and semantic integrationLifeWatch WP5 workshop on
"Semantic Data Integration", Amsterdam, The Netherlands,
May 18, 2009.
[download PDF]
Bodenreider O.Building Ontologies -- Best practices, pitfalls and positivesInvited keynote presentation at the 2009 NIGMS Cell Behavior Ontology Workshop, National
Institutes of Health Campus, Bethesda, MD,
May 4, 2009.
[download PDF]
Bodenreider O.Ontologies and data integration in biomedicine: What is in there for Public
Health?Webcast organized by the Public
Health Informatics Fellowship Program, Centers for Disease Control and Prevention, Atlanta,
Georgia,
November 21, 2008.
[download PDF]
Bodenreider O.Using Semantic Web technologies for terminology integrationSeminar at the Medical
Informatics Laboratory, University of Rennes, France,
June 24, 2008.
[download PDF]
Bodenreider O.Integrating biomedical information through Semantic Web technologiesIndustry
Programme Workshop on "Bridging Ontologies and Text Mining" at the European Biomedical Institute, Wellcome Trust
Genome Campus, Hinxton, UK,
September 14, 2007.
[download PDF]
Bodenreider O.ICF, UMLS, and NLMPanel presentation at the ICDR
Conference on New Federal Applications of the ICF, Arlington, Virginia,
July 11, 2007.
[download PDF]
Bodenreider O.Bio-ontologies: The cream in the Semantic Web layer cakeInvited keynote presentation at NETTAB 2007 "A Semantic Web for Bioinformatics", Pisa, Italy,
June 14, 2007.
[download PDF]
Bodenreider O.The Unified Medical Language System (UMLS) and the Semantic WebTutorial at NETTAB 2007 "A
Semantic Web for Bioinformatics", Pisa, Italy,
June 12, 2007.
[download PDF]
Bodenreider O, Rindflesch TC, Ahlers C.Integrating Biomedical Information in NLM's Biomedical Knowledge RepositoryNational Institute on Drug Abuse,
Division of Basic Neuroscience and Behavior Research, Bethesda, Maryland,
May 11, 2007.
[download PDF]
Bodenreider O, Rindflesch TC.Advanced library services: Developing a biomedical knowledge repository to support advanced
information management applicationsNCI Center for Bioinformatics
Operations Meeting, NCI, Bethesda, Maryland,
April 13, 2007.
[download PDF]
Rindflesch TC, Bodenreider O.Semantic Medline: Overview and DemoNINDS, Bethesda, Maryland,
March 16, 2007.
[download PDF]
Bodenreider O.Evaluation of vocabulary review criteria: Application to the NCI ThesauruscaBIG™
2007 Annual Meeting (Session on "Evaluation of Vocabulary as caBIG™ Standards"),
Washington, D.C.,
February 7, 2007.
[download PDF]
Bodenreider O, Rindflesch TC.Advanced library services: Developing a biomedical knowledge repository to support advanced
information management applicationsBiomedical Information Science and
Technology Initiative (BISTI) and Roadmap Implementation Working Group (RIWG), NIH, Bethesda,
Maryland,
February 1, 2007.
[download PDF]
2006
Bodenreider O.Session 1: Information representation - Panel remarksNIH Conference on Knowledge Environments for Biomedical Research (KEBR), Bethesda,
Maryland,
December 11, 2006.
[download PDF]
Bodenreider O.Unified Medical Language System Semantic NavigatorDemonstration at the AMIA 2006 Symposium, Washington, DC,
November 14, 2006.
[download PDF]
Zeng K, Bodenreider O, Kilbourne J, Nelson SJ.RxNav: Providing Standard Drug InformationTheater-style demonstration at the AMIA 2006 Symposium, Washington, DC,
November 13, 2006.
[download PDF]
Bodenreider O, Kashyap V, Neumann E.Semantic Web for Health Care and Life SciencesTutorial at the AMIA 2006 Symposium, Washington, DC,
November 11, 2006.
[download PDF]
Bodenreider O, Rindflesch TC.Advanced library services: Developing a biomedical knowledge repository to support advanced
information management applicationsForum on Informatics Solutions, NIH/NCRR, Bethesda, Maryland,
November 3, 2006.
[download PDF]
Bodenreider O, Sahoo SS, Zeng K.Integrating Biomedical Knowledge: Experience with Entrez GeneNIH Research Festival,
Bethesda, Maryland,
October 17, 2006.
[download PDF]
Bodenreider O.Visualization Tools for Biomedical KnowledgeWorkshop on Humans and the Semantic Web, Human-Computer Interaction Laboratory, University of Maryland, College Park,
Maryland,
June 2, 2006.
[download PDF]
Bodenreider O.Ontological resources for the translational researcherWorkshop on "Navigating the Translational Researcher Through A Complex of Animal and
Biological Resources", National Center for
Research Resources (NCRR), NIH,
March 6, 2006.
[download PDF]
Bodenreider O.Towards advanced library servicesWorkshop on "Semantic Enrichment of Scientific Literature" at the European Biomedical Institute, Wellcome Trust
Genome Campus, Hinxton, UK,
February 21, 2006.
[download PDF]
Bodenreider O.NLM resources for semantic enrichmentMini-symposium on "Semantic Enrichment of Scientific Literature" at the European Biomedical Institute, Wellcome Trust
Genome Campus, Hinxton, UK,
February 20, 2006.
[download PDF]
Bodenreider O.Acquiring ontological relations from biomedical resourcesIntelligent Systems Program,
University of Pittsburgh, Pennsylvania,
February 3, 2006.
[download PDF]
Bodenreider O.Introduction to the Unified Medical Language SystemDepartment of Health Sciences Informatics, Johns Hopkins University, Baltimore,
Maryland,
November 29, 2005.
[download PDF]
Bodenreider O.Biomedical resources for text mining.Panel on "Ontological research and its applications to the biomedical domain" at
ASIS&T 2005, Charlotte, North
Carolina,
November 1, 2005.
[download PDF]
Bodenreider O.Lexical and statistical approaches to acquiring ontological relations.Workshop on Ontological Foundations of Biomedical Terminology Systems at the AMIA 2005
Annual Symposium, Washington, DC,
October 22, 2005.
[download PDF]
Bodenreider O.The Unified Medical Language System: An overview.Ontology and Taxonomy Coordinating (ONTAC), Working Group, MITRE, McLean, Virginia,
October 5, 2005.
[download PDF]
Bodenreider O.Biomedical resources for text mining.Workshop on Terminologies and ontologies in biomedicine: "Can text mining help?",
Medical Informatics Europe 2005, Geneva,
Switzerland,
August 30, 2005.
[download PDF]
Bodenreider O.Mapping new vocabularies to the UMLS: Experience with ICF.New Freedom Initiative, ICF
Subcommittee, HHS,
July 21, 2005.
[download PDF]
Bodenreider O.Mapping new vocabularies to the UMLS: Experience with ICF.11th Annual North American Collaborating Center (NACC) Conference on the International
Classification of Functioning, Disability and Health (ICF), Mayo Clinic, Rochester, MN,
June 21, 2005.
[download PDF]
Bodenreider O.Introduction to the Unified Medical Language SystemSchool of Nursing, Johns Hopkins University, Baltimore, Maryland,
December 16, 2004.
[download PDF]
Bodenreider O.The Unified Medical Language System: Identifying relations among biomedical
termsWorkshop on Knowledge, Language and Informatics, Laboratoire d'Informatique de Paris-Nord,
Villetaneuse, France,
December 7, 2004.
[download PDF]
Bodenreider O.The Unified Medical Language System: A two-level structureINSERM ERM 202, Paris, France,
December 6, 2004.
[download PDF]
Bodenreider O.From terminology integration to information integration: An example in the domain of
genomics.Forum on Informatics Solutions, NIH/NCRR, Bethesda, Maryland,
December 3, 2004.
[download PDF]
Bodenreider O.What do biomedical terminologies tell us about biomedicine?Conference on Medicine and Metaphysics, University at Buffalo, NY,
November 13, 2004.
[download PDF]
Bodenreider O.Large formal ontologies for biomedicine.Panel at MedInfo 2004, San Francisco, California,
September 10, 2004.
[download PDF]
Bodenreider O.Foundational issues in biomedical ontologies.Workshop at MedInfo 2004, San Francisco, California,
September 9, 2004.
[download PDF]
Bodenreider O, Willis J, and Hole WT.The Unified Medical Language System: What is it and how to use it?Tutorial at MedInfo 2004, San Francisco, California,
September 8, 2004.
[download PDF (presentation)][download PDF (handouts)]
Bodenreider O.Biomedical knowledge visualization.Second Workshop on Visualizing Information in Knowledge Engineering (VIKE'04),
July 6, 2004.
[download PDF]
Bodenreider O.Medical knowledge representation: Issues, challenges, and new directions.Panel on "Medical knowledge representation" at the First International Workshop
on Formal Biomedical Knowledge Representation (KR-MED 2004),
June 1, 2004.
[download PDF]
2003
Bodenreider O.Information integration through terminology integration.AMIA 2003 Panel "NLP for Biomedical Applications: Bridging Basic and Clinical
Science",
November 12, 2003.
[download PDF]
Bodenreider O.From terminology integration to information integration: An example in the domain of
genetics.School of Information and Library Science, University of North Carolina at Chapel
Hill,
October 27, 2003.
[download PDF]
Bodenreider O.From biomedical language to biomedical knowledge: Uncovering relations expressed through
reification and other linguistic phenomenaWorkshop on Ontologies in Medicine, Rome, Italy,
October 8, 2003.
[download PDF]
Bodenreider O.Issues and perspectives for medical text indexingWorkshop on the Semantic Web at the MIE 2003 Conference, St-Malo, France,
May 6, 2003.
[download PDF]
Bodenreider O.The Unified Medical Language System: What is it and how to use it?Tutorial at the MIE 2003 Conference, St-Malo, France,
May 4, 2003.
[download PDF]
Bodenreider O.The Unified Medical Language System (UMLS): Between Terminology and OntologyColumbia University, Department of Medical Informatics,
April 29, 2002.
[download PDF]
Bodenreider O.Integrating GO into UMLSPacific Symposium on Biocomputing, Kauai, Hawaii,
January 7, 2003.
[download PDF]
2002
Bodenreider O, Hole WT, Humphreys BL, Roth LA, Srinivasan S.Customizing the UMLS Metathesaurus for your applicationsTutorial at the AMIA 2002 Symposium, San Antonio, Texas,
November 9, 2002.
[download PDF]
Bodenreider O.From terminology integration to interoperabilityWorkshop on "Information Technologies for Healthcare: Barriers to Implementation", National
Institute of Standards and Technology,
August 1, 2002.
[download PDF]
Bodenreider O.Issues in the visualization and navigation of biomedical knowledgeNew Jersey Institute of Technology, College of Computing Sciences, Computer Science
Department,
April 29, 2002.
[download PDF]
Bodenreider O, Burgun A.From UMLS concept spaces to a biomedical ontology.Ontological Spring: An Introductory Workshop in Ontology, Institute for Formal Ontology and
Medical Information Science, Naumburg, Germany,
April 20, 2002.
[download PDF]
Bodenreider O, Burgun A.What needs to be represented in a biomedical ontology?Ontological Spring: An Introductory Workshop in Ontology, Institute for Formal Ontology and
Medical Information Science, Naumburg, Germany,
April 20, 2002.
[download PDF]
Burgun A, Bodenreider O.Ontologies, Terminologies and Knowledge Bases in the Biomedical DomainOntological Spring: An Introductory Workshop in Ontology, Institute for Formal Ontology and
Medical Information Science, Naumburg, Germany,
April 19, 2002.
[download PDF]
Burgun A, Bodenreider O.Examples of ontologies in the biomedical domain.Ontological Spring: An Introductory Workshop in Ontology, Institute for Formal Ontology and
Medical Information Science, Naumburg, Germany,
April 19, 2002.
[download PDF]
Bodenreider O.The U.S. National Library of Medicine. [French]
Journées ÉMOIS,
March 21, 2002.
[download PDF]
2001
Bodenreider O.Issues in the organization of biomedical knowledge.School of Information and Library Science, University of North Carolina at Chapel
Hill,
December 3, 2001.
[download PDF]
Bodenreider O, Hole WT, Humphreys BL, Roth LA, Srinivasan S.Customizing the UMLS Metathesaurus for your applicationsTutorial at the AMIA 2001 Symposium, Washington, D.C.,
November 3, 2001.
[download PDF]