PUBLICATIONS & PRESENTATION
Presentations
2023
2022
2021
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Bodenreider O.
Interoperability and Health Data Integration - Key Concepts
Invited presentation at the AIM Symposium on "Les systèmes d’information apprenants pour une aide
à la décision de confiance en santé", in Rennes, France (online
presentation),
November 30, 2021.
[download PDF]
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Bodenreider O.
Aligning biomedical terminologies - From lexical models to supervised learning
Invited health informatics seminar at the Weill Cornell Medicine Division of Health Informatics (online
presentation),
September 16, 2021.
[download PDF]
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Bodenreider O.
Drug analytics from claims data - Resources, methods and applications
Invited seminar at the University of Michigan College of Pharmacy, Department of Clinical Pharmacy
(online presentation),
March 22, 2021.
[download PDF]
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Bodenreider O.
Aligning biomedical terminologies - From lexical models to supervised learning
Invited seminar at the École
de santé publique de l’Université de Montréal (online presentation),
February 17, 2021.
[download PDF]
2020
2019
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Bodenreider O.
Interoperability and biomedical terminologies -- Three examples of coverage and alignment
studies
Invited presentation at the Master en santé publique (M2) – SITIS, Institut de Santé Publique
d’Epidémiologie et de Développement, in Bordeaux, France,
October 11, 2019.
[download PDF]
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Bodenreider O.
Interoperability for clinical analytics
Invited presentation at the Institut de Santé Publique d’Epidémiologie et de Développement,
in Bordeaux, France,
October 11, 2019.
[download PDF]
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Bodenreider O.
Using lexical and structural features for quality assurance of biomedical ontologies --
Application to SNOMED CT
Invited presentation at the George Washington University Biomedical Informatics Center, in Washington,
DC,
October 7, 2019.
[download PDF]
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Fung KW, Xu J,Bodenreider O.
Comparative analysis of ICD-11
Invited presentation at the National Committee on Vital and Health Statistics, Subcommittee on Standards,
ICD-11 Expert Roundtable Meeting, in Washington, DC,
August 6-7, 2019.
[download PDF]
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Bodenreider O.
Anatomical ontologies -- How of them many do we need?
Invited presentation at the HuBMAP Common Coordinate
Framework Meeting (CCFM), in Bloomington, Indiana,
May 9, 2019.
[download PDF]
2018
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Bodenreider O.
Categorization and classification of drugs
Presentation at the National
Center for Health Statistics, meeting on "Drug Overdose Death Data: Shaping the Vision for
Using Death Certificate Literal Text
", Hyattsville, Maryland,
November 29, 2018.
[download PDF]
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Bodenreider O, Huser V, Reich C.
Analyzing large drug prescription datasets -- Principles, tools and examples
Tutorial at the AMIA 2018 Annual
Symposium, San Francisco, California,
November 3, 2018.
[download PDF]
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Bodenreider O and Nelson S.
Analyzing opioid prescriptions in Medicare Part D: Issues, tools, and
techniques
Tutorial at the American Society of
Health System Pharmacists (ASHP) Summer Meetings, in Denver, Colorado,
June 3, 2018.
[download PDF]
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Nelson S, Bodenreider O and Boyce R.
Informatics and interoperability -- Practical tools and strategies for analyzing real world
data
Short course at the International Society for Pharmacoeconomics and Outcomes Research (ISPOR) 22nd
Annual International Meeting, in Boston, Massachusetts,
May 20, 2017.
[download PDF]
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Bodenreider O.
The role of terminologies in health data analytics through common data models
Invited presentation at the SNOMED
InternationalOntologies for Clinical Value Symposium, in London, UK,
April 12, 2018.
[download PDF]
2017
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Bodenreider O.
Using lexical and structural features for quality assurance of biomedical
ontologies
Seminar at Kno.e.sis, College of Engineering and Computer Science,
Wright State university, Dayton, Ohio,
December 14, 2017.
[download PDF]
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Bodenreider O.
RxMix -- Use of NLM drug APIs by non-programmers
Demonstration at the AMIA 2017
Annual Symposium, in Washington, D.C.,
November 6, 2017.
[download PDF]
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Bodenreider O.
Aligning RxNorm with the SNOMED CT drug model and IDMP
Invited presentation at the 2017 DailyMed/RxNorm Jamboree Workshop, in Bethesda, Maryland,
September 19, 2017.
[download PDF]
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Bodenreider O.
The RxNorm Time Machine -- Issues in using RxNorm for analytics
Invited presentation at the 2017 DailyMed/RxNorm Jamboree Workshop, in Bethesda, Maryland,
September 19, 2017.
[download PDF]
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Bodenreider O.
Controlled vocabularies & semantic standards
Invited presentation at the NLM Georgia
Biomedical Informatics Course, in Young Harris, Georgia,
September 15, 2017.
[download PDF]
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Bodenreider O.
Biomedical ontology in action
Invited presentation at the Institute for
Biomedical Informatics, University of Kentucky
College of Medicine, in Lexington, Kentucky,
September 11, 2017.
[download PDF]
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Olivier Bodenreider, Fabrício Kury, Seohyon Baik.
Exploring opioid use through the Medicare dataset in collaboration with NIDA
Board of Scientific Counselors, Lister Hill National Center for Biomedical Communications, National Library of Medicine, in Bethesda,
Maryland,
September 8, 2017.
[download PDF]
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Bodenreider O.
Standard terminology research and development at the U.S. National Library of
Medicine
Invited lecture at the Workshop on Biomedical Informatics, Institute of Medical
Information and Library, Chinese Academy of Medical Sciences, in Beijing, China,
August 31, 2017.
[download PDF]
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Bodenreider O.
Using lexical and structural features for quality assurance of biomedical ontologies --
Application to SNOMED CT
Invited lecture at the Academy of
Mathematics and Systems Science (AMSS) Workshop on Biomedical Informatics, in Beijing,
China,
August 29, 2017.
[download PDF]
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Bodenreider O.
Interoperability for clinical research -- Observational Health Data Sciences and
Informatics (OHDSI)
Invited lecture at the Ninth Mediterranean Summer School on "Health information systems",
in Corte, France,
July 18, 2017.
[download PDF]
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Bodenreider O.
What are ontologies and why do we need them for terminologies?
Online lecture part of the "Data to Knowledge (Clinical Data Standards) [ACI
6130]" course from the Vanderbilt University Medical Center, Department of Biomedical Informatics,
Masters of Science in Applied Clinical Informatics,
June 26, 2017.
[download PDF]
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Bodenreider O.
RxNorm -- Why should pharmacists care?
Tutorial at the American Society
of Health System Pharmacists (ASHP) Summer Meetings, in Minneapolis, Minnesota,
June 4, 2017.
[download PDF]
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Nelson S, Bodenreider O, Malone D and Boyce R.
Informatics and interoperability -- Practical tools and strategies for analyzing real world
data
Short course at the International Society for Pharmacoeconomics and Outcomes Research (ISPOR) 22nd
Annual International Meeting, in Boston, Massachusetts,
May 20, 2017.
[download PDF]
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Bodenreider O.
Clinical terminology
Invited presentation at the NLM Georgia
Biomedical Informatics Course, in Young Harris, Georgia,
April 4, 2017.
[download PDF]
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Bodenreider O.
Services for drug-drug interactions (DDI) and DDI research at NLM
Invited presentation at the U.S. Food and Drug Administration (FDA), Center for Drug Evaluation and Research
(CDER) Drug Safety Oversight Board, in Silver Spring, Maryland,
March 16, 2017.
[download PDF]
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Bodenreider O.
Clinical terminologies from the research perspective
Invited presentation at the University of Missouri-Kansas City (UMKC), School of Medicine, Department of
Biomedical and Health Informatics, Health Facts Boot Camp, in Kansas City , Missouri,
March 13, 2017.
[download PDF]
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Bodenreider O.
Tying it all together -- From terminology integration to annotation integration
Invited keynote presentation at the Biomedical Linked Annotation Hackathon 3 (BLAH3), in Tokyo, Japan,
January 16, 2017.
[download PDF]
2016
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Bodenreider O, Huser V, Reich C.
Resources for analyzing drug prescription datasets
Tutorial at the AMIA 2016 Annual
Symposium, Chicago, Illinois,
November 12, 2016.
[download PDF]
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Bodenreider O.
Annotations for biomedical research and healthcare – Bridging the gap
Invited presentation at the Joint International Conference on Biological Ontology and BioCreative (2016)
in Corvallis, Oregon,
August 1, 2016.
[download PDF]
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Bodenreider O.
Leveraging RxNorm and drug classifications for analyzing prescription datasets
Invited presentation at the American
Medical Informatics Association (AMIA) monthly webinar series,
June 13, 2016.
[download PDF]
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Nelson S, Bodenreider O, Malone D and Boyce R.
Informatics and Interoperability -- Speaking the Same Language
Short course at the International Society for Pharmacoeconomics and Outcomes Research (ISPOR) 21st
Annual International Meeting, Washington, DC,
May 21, 2016.
[download PDF]
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Bodenreider O.
Ontologies: Applications to Epilepsy
Invited presentation at the Interagency Collaborative to Advance Research in Epilepsy (ICARE) working
group meeting, in Bethesda, Maryland,
April 14, 2016.
[download PDF]
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Bodenreider O.
Controlled terminologies
Invited presentation at the NLM Georgia
Biomedical Informatics Course, in Young Harris, Georgia,
April 5, 2016.
[download PDF]
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Bodenreider O.
Leveraging RxNorm and drug classifications for analyzing prescription datasets
Invited presentation at the Symposium on "Chemistry, Data, & the Semantic Web: An Important Triple to
Advance Science" at the 251st American
Chemical Society National Meeting & Exposition, in San Diego, California,
March 17, 2016.
[download PDF]
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Bodenreider O.
Ontologies support semantic interoperability in healthcare -- Two use cases in information
exchange and analytics
Invited webcast presentation at the Ontology Summit
2016 Session on Healthcare,
March 10, 2016.
[download PDF]
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Bodenreider O.
Interoperability between phenotypes in research and healthcare terminologies --
Investigating partial mappings between HPO and SNOMED CT
Webcast organized by the IHTSDO Implementation
Special Interest Group,
March 8, 2016.
[download PDF]
2015
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Bodenreider O.
Ontological, epistemological and terminological aspects of phenotypes
Invited keynote presentation at the Phenotype Day SIG Workshop at ISMB/ECCB 2015, in Dublin, Ireland,
July 11, 2015.
[download PDF]
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Bodenreider O.
Phenotypes in standard terminologies: Bridging the gap between clinical practice and
research
Invited presentation at the Department of Biomedical Informatics, Harvard Medical School, in Boston,
Massachusetts,
June 10, 2015.
[download PDF]
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Nelson S, Bodenreider O, Malone D and Boyce R.
Informatics and Interoperability -- Speaking the Same Language
Workshop (W17 ) at the International Society for Pharmacoeconomics and Outcomes Research (ISPOR) 20th
Annual International Meeting, Philadelphia, Pennsylvania,
May 19, 2015.
[download PDF]
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Bodenreider O.
Oncology in SNOMED CT
Invited presentation at the NCI workshop on "The Role of Ontology in Big Cancer Data", in
Bethesda, Maryland,
May 13, 2015.
[download PDF]
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Bodenreider O.
Overview of RxNorm (including tools and APIs)
Webinar from the PCORnet "Office Hours" webinar
series,
February 18, 2015.
[view video recording]
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Bodenreider O.
Ontologies and public health
Webcast organized by the Public
Health Informatics Fellowship Program, Centers for Disease Control and Prevention, Atlanta,
Georgia,
January 16, 2015.
[download PDF]
2014
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Bodenreider O.
UMLS in biomedical text processing
Tutorial at the ACL 2014 BioNLP Workshop,
Baltimore, Maryland,
June 27, 2014.
[download PDF]
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Bodenreider O.
Ontologies at the NLM
Invited presentation at the 2014
Protein Ontology Workshop, Washington, DC,
June 18, 2014.
[download PDF]
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Bodenreider O and Jonathan Mortensen.
RxMix – Enabling complex queries to drug information sources through functional
composition
Webinar from the National Center
for Biomedical Ontology (NCBO) webinar series,
May 21, 2014.
[download PDF]
[view WebEx
recording]
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Bodenreider O.
Standards and semantics for biomedicine
Invited presentation at the OMG workshop "Semantics - Crossing the Chasm", Reston, Virginia,
March 26, 2014.
[download PDF]
2013
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Bodenreider O.
RxNav, the RxNorm API and RxMix
Board of Scientific Counselors, Lister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda,
Maryland,
September 12, 2013.
[download PDF]
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Bodenreider O.
Semantic indexing in PubMed
Invited presentation at the 8th Workshop on
Innovations in Scholarly Communication (OAI8), in Geneva, Switzerland,
June 20, 2013.
[download PDF]
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Bodenreider O.
NLM Resources for Mining Biomedical Text
Invited keynote presentation at the i2b2 3rd Annual
Academic User Group Meeting & NLP Workshop, in Boston, Massachusetts,
June 18, 2013.
[download PDF]
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Bodenreider O.
Quality assurance of biomedical ontologies (and derived artifacts) in the era of Meaningful
Use of Electronic Health Records data
Invited keynote presentation at the Ontology Summit 2013 Symposium at the National Institute of Standards and Technology (NIST), Gaithersburg,
Maryland,
May 3, 2013.
[download PDF]
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Bodenreider O.
From biomedical information integration to knowledge discovery through the Semantic
Web
Invited keynote presentation at the Conference on Semantics in Healthcare and Life Sciences (CSHALS 2013), in
Boston, Massachusetts,
February 28, 2013.
[download PDF]
2012
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Bodenreider O.
What is an ontology? (And why should you care?)
Invited presentation at the 10th European Congress on Epileptology Forum on Epilepsy Informatics, London,
UK,
October 4, 2012.
[download PDF]
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Bodenreider O.
The Value Set Authority Center: Validating and delivering value sets for Meaningful Use
Stage 2
Board of Scientific Counselors, Lister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda,
Maryland,
September 7, 2012.
[download PDF]
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Bodenreider O.
From biomedical information integration to knowledge discovery
Invited keynote presentation at the 5th
International Symposium on Semantic Mining in Biomedicine (SMBM 1202) at the Institute of Computational
Linguistics, University of Zurich,
Switzerland,
September 4, 2012.
[download PDF]
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Bodenreider O.
Unified Medical Language System: Overview
Seminar at the IBM Watson Research
Center, Hawthorne, New York,
February 22, 2012.
[download PDF]
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Bodenreider O.
NLM Resources for Mining Biomedical Text
Seminar at the University of California San
Diego Division of Biomedical Informatics,
San Diego, California,
February 3, 2012.
[download PDF]
2011
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Bodenreider O, Case JT, Fung KW and Willis JH.
Using SNOMED CT with the UMLS
Tutorial at the IHTSDO October
Conference 2011, Sydney, Australia,
October 14, 2011.
[download PDF]
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Peters L, Nguyen T, Bodenreider O.
RxNav: Browser and Application Programming Interfaces for Drug Information
Sources
Theater-style demonstration at the AMIA 2011 Annual Symposium, Washington, DC,
November 17, 2010.
[download PDF]
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Bodenreider O.
Drug Information Sources: Beyond Named Entity Recognition
Panel presentation (Resources for Pharmacogenomics: Current and Future) at the AMIA Summit
on Translational Bioinformatics 2011, San Francisco,
March 8, 2011.
[download PDF]
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Bodenreider O.
Knowledge Representation & Ontology in the Biomedical Domain
Invited presentation at the Molecular Med TRI-CON 2011, San Francisco,
February 25, 2011.
[download PDF]
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Bodenreider O.
RxNav: Browser and Application Programming Interfaces for Drug Information
Sources
Webinar from the National Center
for Biomedical Ontology (NCBO) webinar series,
February 2, 2011.
[download PDF]
[view
WebEx recording]
2010
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Bodenreider O.
Biobanks in the US: Interoperability, Database and Ontology
Invited presentation at the I3-CRB Conference on Interoperability, Database and Ontology, Lille,
France,
November 23, 2010.
[download PDF]
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Bodenreider O.
RxNav: Browser and Application Programming Interfaces for RxNorm
Theater-style demonstration at the AMIA 2010 Annual Symposium, Washington, DC,
November 17, 2010.
[download PDF]
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Bodenreider O.
Medical terminologies and medical literature analysis
Text
mining hands-on course and training seminar at the European Biomedical Institute, Wellcome Trust Genome Campus, Hinxton,
UK,
October 27, 2010.
[download PDF]
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Bodenreider O.
RxNav: Browser and Application Programming Interfaces for RxNorm
Presentation at the Lister Hill
National Center for Biomedical Communications Brown Bag Lunch series,
July 6, 2010.
[download PDF]
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Bodenreider O.
Clinical ontologies in practice
Short course at the Clinical
Informatics Research and Development (CIRD) group, Partners HealthCare, Boston, Massachusetts,
June 15-17, 2010.
[download PDF]
[download PDF (B&W slides)]
[download PDF (handouts)]
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Bodenreider O.
Present and future of biomedical ontologies
Invited presentation at the Health-e-Child Final Conference, Sestri Levante, Italy,
April 24, 2010.
[download PDF]
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Bodenreider O.
Quality assurance in biomedical terminologies and ontologies
Board of Scientific Counselors, Lister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda,
Maryland,
April 8, 2010.
[download PDF]
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Bodenreider O.
Ontologies and biosurveillance
Webcast organized by the Public
Health Informatics Fellowship Program, Centers for Disease Control and Prevention, Atlanta,
Georgia,
March 12, 2010.
[download PDF]
2009
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Bodenreider O.
Provenance information in biomedical knowledge repositories - A use case
Invited presentation at the First International Workshop on the role of Semantic Web in
Provenance Management (SWPM 2009), Washington, DC,
October 25, 2009.
[download PDF]
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Bodenreider O.
An introduction to biomedical ontology
Tutorial at the International
Conference on Biomedical Ontology 2009, University at Buffalo, Buffalo, NY,
July 22, 2009.
[download PDF]
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Bodenreider O.
Challenges and promises of the Semantic Web in health care and life sciences
Invited talk at the Special Library Association Annual Conference 2009 / Biomedical
& Life Sciences Division, Washington, DC,
June 15, 2009.
[download PDF]
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Bodenreider O.
From biomedical informatics to translational research
Seminar at the Case Western Reserve
University Electrical Engineering and
Computer Science Department, Cleveland, Ohio,
May 28, 2009.
[download PDF]
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Bodenreider O.
Ontologies and data integration in biomedicine
Seminar at Kno.e.sis, College of Engineering and Computer Science,
Wright State university, Dayton, Ohio,
May 27, 2009.
[download PDF]
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Bodenreider O.
From biomedical informatics to translational research
Seminar at the Wright State
university Biomedical Sciences Ph.D. Program retreat, Dayton, Ohio,
May 27, 2009.
[download PDF]
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Bodenreider O.
UMLS and semantic integration
LifeWatch WP5 workshop on
"Semantic Data Integration", Amsterdam, The Netherlands,
May 18, 2009.
[download PDF]
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Bodenreider O.
Building Ontologies -- Best practices, pitfalls and positives
Invited keynote presentation at the 2009 NIGMS Cell Behavior Ontology Workshop, National
Institutes of Health Campus, Bethesda, MD,
May 4, 2009.
[download PDF]
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Bodenreider O.
Reconciling annotations made to different terminologies
Second Workshop
on "Semantic Enrichment of Scientific Literature" (SESL 2009) at the European Biomedical Institute, Wellcome Trust
Genome Campus, Hinxton, UK,
March 31, 2009.
[download PDF]
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Bodenreider O.
Yes We Can: From biomedical informatics to translational research
Inserm U936 "Modélisation des
connaissances biomédicales" inaugural event, Rennes, France,
February 6, 2009.
[download PDF]
2008
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Burgun A, Mougin F, Bodenreider O.
UMLS and phenotype coding
One Medicine
One Pathology: The Second Annual CASIMIR symposium on Human and Mouse Disease Informatics, CASIMIR - Coordination and Sustainability of
International Mouse Informatics Resources,
December 2, 2008.
[download PDF]
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Bodenreider O.
Ontologies and data integration in biomedicine: What is in there for Public
Health?
Webcast organized by the Public
Health Informatics Fellowship Program, Centers for Disease Control and Prevention, Atlanta,
Georgia,
November 21, 2008.
[download PDF]
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Bodenreider O.
Ontologies for mining biomedical data
Invited keynote presentation at the 2nd IEEE International Conference on Bioinformatics and Biomedicine (BIBM
2008), Philadelphia, Pennsylvania,
November 5, 2008.
[download PDF]
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Bodenreider O.
The UMLS and the Semantic Web
BioRDF
Teleconference, W3C Semantic Web Health Care
and Life Sciences Interest Group,
September 22, 2008.
[download PDF]
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Bodenreider O.
RxNav: Interfaces to drug information sources
Presentation at the Lister Hill
National Center for Biomedical Communications Brown Bag Lunch series,
August 1, 2008.
[download PDF]
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Bodenreider O.
Drug vocabulary integration at the National Library of Medicine
Seminar at the SPIM (Laboratoire de
Santé Publique et Informatique Médicale) / INSERM (UMRS 872, équipe 20),
University of Paris 5, Paris, France,
June 30, 2008.
[download PDF]
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Bodenreider O.
Ontologies and data integration in biomedicine: Success stories and challenging
issues
Invited keynote presentation at the 5th
International Workshop on Data Integration in the Life Sciences (DILS 2008), Evry,
France,
June 26, 2008.
[download PDF]
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Bodenreider O.
Using Semantic Web technologies for terminology integration
Seminar at the Medical
Informatics Laboratory, University of Rennes, France,
June 24, 2008.
[download PDF]
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Bodenreider O.
Biomedical ontologies in practice
Short course at the University of
Utah, Department of Biomedical Informatics, Salt Lake City, Utah,
June 9-11, 2008.
[download PDF]
[download PDF (B&W slides)]
[download PDF (handouts)]
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Bodenreider O.
UMLS Semantic Network
Webcast from the UMLS Webcasts series,
February 29, 2008.
[download PDF (color slides)]
[download PDF (B&W slides)]
[watch webcast (requires Flash Player)]
2007
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Bodenreider O.
Terminological systems in biomedicine: From terminology integration to information
integration
Invited keynote presentation at the 2nd International Symposium on Languages in Biology and Medicine (LBM
2007), Matrix, Biopolis, Singapore,
December 6, 2007.
[download PDF]
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Bodenreider O.
The Unified Medical Language System: What is it and how to use it?
Seminar at the Natural Language
Processing and Computational Linguistics Research Lab, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic
of Korea,
December 4, 2007.
[download PDF]
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Bodenreider O.
Aligning relationships in the UMLS: Methods and preliminary results
Seminar of the Department of Computer
Science, New Jersey's Science and Technology
University (NJIT), Newark, New Jersey,
October 23, 2007.
[download PDF]
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Bodenreider O.
Integrating biomedical information through Semantic Web technologies
Industry
Programme Workshop on "Bridging Ontologies and Text Mining" at the European Biomedical Institute, Wellcome Trust
Genome Campus, Hinxton, UK,
September 14, 2007.
[download PDF]
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Bodenreider O.
Biolexicon, bioterminologies and related resources
Workshop on "Bridging Ontologies and Text Mining" at the European Biomedical Institute, Wellcome Trust
Genome Campus, Hinxton, UK,
September 12, 2007.
[download PDF]
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Bodenreider O.
The Unified Medical Language System: What is it and how to use it?
Tutorial at Medinfo 2007,
Brisbane, Australia,
August 19, 2007.
[download PDF]
[download PDF (B&W slides)]
[download PDF (B&W handouts)]
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Bodenreider O, Rindflesch TC.
NLM Resources for Mining Biomedical Text
Presentation to the Research, Condition, and Disease Categorization (RCDC) project team, Bethesda,
Maryland,
July 17, 2007.
[download PDF]
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Bodenreider O.
ICF, UMLS, and NLM
Panel presentation at the ICDR
Conference on New Federal Applications of the ICF, Arlington, Virginia,
July 11, 2007.
[download PDF]
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Bodenreider O, Rindflesch TC.
Biomedical Knowledge Repository and Semantic Medline
National Institute of Allergy and
Infectious Diseases (NIAID), Bethesda, Maryland,
June 25, 2007.
[download PDF]
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Bodenreider O.
Bio-ontologies: The cream in the Semantic Web layer cake
Invited keynote presentation at NETTAB 2007 "A Semantic Web for Bioinformatics", Pisa, Italy,
June 14, 2007.
[download PDF]
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Bodenreider O.
The Unified Medical Language System (UMLS) and the Semantic Web
Tutorial at NETTAB 2007 "A
Semantic Web for Bioinformatics", Pisa, Italy,
June 12, 2007.
[download PDF]
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Bodenreider O, Rindflesch TC, Ahlers C.
Integrating Biomedical Information in NLM's Biomedical Knowledge Repository
National Institute on Drug Abuse,
Division of Basic Neuroscience and Behavior Research, Bethesda, Maryland,
May 11, 2007.
[download PDF]
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Bodenreider O.
Unified Medical Language System: The graph behind the forest.
Workshop on
Associating Semantics with Graphs, Center
for Dynamic Data Analysis (DynDAn), Center for Discrete Mathematics and Theoretical Computer Science (DIMACS),
Rutgers University, Piscataway, New Jersey,
April 16, 2007.
[download PDF]
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Bodenreider O, Rindflesch TC.
Advanced library services: Developing a biomedical knowledge repository to support advanced
information management applications
NCI Center for Bioinformatics
Operations Meeting, NCI, Bethesda, Maryland,
April 13, 2007.
[download PDF]
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Rindflesch TC, Bodenreider O.
Semantic Medline: Overview and Demo
NINDS, Bethesda, Maryland,
March 16, 2007.
[download PDF]
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Bodenreider O.
Public health ontology vs. Ontology for public health.
Public Health Informatics Fellowship
Program, Centers for Disease Control and Prevention, Atlanta, Georgia,
February 23, 2007.
[download PDF]
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Bodenreider O.
Evaluation of vocabulary review criteria: Application to the NCI Thesaurus
caBIG™
2007 Annual Meeting (Session on "Evaluation of Vocabulary as caBIG™ Standards"),
Washington, D.C.,
February 7, 2007.
[download PDF]
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Bodenreider O, Rindflesch TC.
Advanced library services: Developing a biomedical knowledge repository to support advanced
information management applications
Biomedical Information Science and
Technology Initiative (BISTI) and Roadmap Implementation Working Group (RIWG), NIH, Bethesda,
Maryland,
February 1, 2007.
[download PDF]
2006
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Bodenreider O.
Session 1: Information representation - Panel remarks
NIH Conference on Knowledge Environments for Biomedical Research (KEBR), Bethesda,
Maryland,
December 11, 2006.
[download PDF]
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Bodenreider O.
Biomedical Ontologies: What are they good for?
Department of Computer Science,
University of Missouri-Columbia,
November 30, 2006.
[download PDF]
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Bodenreider O.
Unified Medical Language System Semantic Navigator
Demonstration at the AMIA 2006 Symposium, Washington, DC,
November 14, 2006.
[download PDF]
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Zeng K, Bodenreider O, Kilbourne J, Nelson SJ.
RxNav: Providing Standard Drug Information
Theater-style demonstration at the AMIA 2006 Symposium, Washington, DC,
November 13, 2006.
[download PDF]
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Bodenreider O, Kashyap V, Neumann E.
Semantic Web for Health Care and Life Sciences
Tutorial at the AMIA 2006 Symposium, Washington, DC,
November 11, 2006.
[download PDF]
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Bodenreider O, Rindflesch TC.
Advanced library services: Developing a biomedical knowledge repository to support advanced
information management applications
Forum on Informatics Solutions, NIH/NCRR, Bethesda, Maryland,
November 3, 2006.
[download PDF]
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Bodenreider O, Sahoo SS, Zeng K.
Integrating Biomedical Knowledge: Experience with Entrez Gene
NIH Research Festival,
Bethesda, Maryland,
October 17, 2006.
[download PDF]
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Bodenreider O.
Ontologies for Data Integration: The Unified Medical Language System
Manufacturing
Metrology and Standards for the Health Care Enterprise Program, National Institute of Standards and Technology (NIST), Gaithersburg,
Maryland,
July 24, 2006.
[download PDF]
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Bodenreider O.
From terminology integration to information integration: Unified Medical Language System
(UMLS)
BioRDF
Teleconference, W3C Semantic Web Health Care
and Life Sciences Interest Group,
June 5, 2006.
[download PDF]
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Bodenreider O.
Visualization Tools for Biomedical Knowledge
Workshop on Humans and the Semantic Web, Human-Computer Interaction Laboratory, University of Maryland, College Park,
Maryland,
June 2, 2006.
[download PDF]
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Bodenreider O.
Ontologies for data integration: A Semantic Web perspective
Training Course in
Biomedical Ontology, Schloß Dagstuhl, Wadern, Germany,
May 24, 2006.
[download PDF]
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Bodenreider O.
Experience in aligning anatomical ontologies
Training Course in
Biomedical Ontology, Schloß Dagstuhl, Wadern, Germany,
May 23, 2006.
[download PDF]
-
Bodenreider O.
Enhancing ontologies through annotations
Training Course in
Biomedical Ontology, Schloß Dagstuhl, Wadern, Germany,
May 22, 2006.
[download PDF]
-
Bodenreider O.
Biomedical ontology and drug information
PharmaDiscovery 2006, Bethesda, Maryland,
May 11, 2006.
[download PDF]
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Bodenreider O.
Biomedical terminology and beyond: Ontology and terminology services
Invited keynote presentation at the Workshop on Foundations
of Clinical Terminologies and Classifications (FCTC 2006), Timisoara, Romania,
April 8, 2006.
[download PDF]
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Bodenreider O.
UMLS and Semantic Web
Workshop on ontology "Focus on Immunology" organized by the Division of Allergy,
Immunology and Transplantation, NIAID,
NIH,
March 21, 2006.
[download PDF]
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Bodenreider O.
Ontological resources for the translational researcher
Workshop on "Navigating the Translational Researcher Through A Complex of Animal and
Biological Resources", National Center for
Research Resources (NCRR), NIH,
March 6, 2006.
[download PDF]
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Bodenreider O.
Biomedical resources for text mining
National Center for Text Mining,
University of Manchester, UK,
February 23, 2006.
[download PDF]
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Bodenreider O.
Towards advanced library services
Workshop on "Semantic Enrichment of Scientific Literature" at the European Biomedical Institute, Wellcome Trust
Genome Campus, Hinxton, UK,
February 21, 2006.
[download PDF]
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Bodenreider O.
NLM resources for semantic enrichment
Mini-symposium on "Semantic Enrichment of Scientific Literature" at the European Biomedical Institute, Wellcome Trust
Genome Campus, Hinxton, UK,
February 20, 2006.
[download PDF]
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Bodenreider O.
Acquiring ontological relations from biomedical resources
Intelligent Systems Program,
University of Pittsburgh, Pennsylvania,
February 3, 2006.
[download PDF]
-
Bodenreider O.
Biomedical resources for text mining
Center for Biomedical
Informatics, University of Pittsburgh, Pennsylvania,
February 3, 2006.
[download PDF]
2005
-
Bodenreider O.
Introduction to the Unified Medical Language System
Department of Health Sciences Informatics, Johns Hopkins University, Baltimore,
Maryland,
November 29, 2005.
[download PDF]
-
Bodenreider O.
Biomedical resources for text mining.
Panel on "Ontological research and its applications to the biomedical domain" at
ASIS&T 2005, Charlotte, North
Carolina,
November 1, 2005.
[download PDF]
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Bodenreider O.
Enriching bio-ontologies with non-hierarchical relations.
Workshop on Bio-ontologies, National Center for
Ontological Research, University at Buffalo, New York,
October 28, 2005.
[download PDF]
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Bodenreider O.
Lexical and statistical approaches to acquiring ontological relations.
Workshop on Ontological Foundations of Biomedical Terminology Systems at the AMIA 2005
Annual Symposium, Washington, DC,
October 22, 2005.
[download PDF]
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Bodenreider O.
The Unified Medical Language System: Integrating biomedical terminology.
Public Health Informatics Fellowship
Program, Centers for Disease Control and Prevention, Atlanta, Georgia,
October 14, 2005.
[download PDF]
-
Bodenreider O.
The Unified Medical Language System: An overview.
Ontology and Taxonomy Coordinating (ONTAC), Working Group, MITRE, McLean, Virginia,
October 5, 2005.
[download PDF]
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Bodenreider O.
Biomedical resources for text mining.
Workshop on Terminologies and ontologies in biomedicine: "Can text mining help?",
Medical Informatics Europe 2005, Geneva,
Switzerland,
August 30, 2005.
[download PDF]
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Bodenreider O.
The Unified Medical Language System: What is it and how to use it?
Tutorial at Medical Informatics Europe
2005, Geneva, Switzerland,
August 28, 2005.
[download PDF]
[download PDF (handouts)]
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Bodenreider O.
Mapping new vocabularies to the UMLS: Experience with ICF.
New Freedom Initiative, ICF
Subcommittee, HHS,
July 21, 2005.
[download PDF]
-
Bodenreider O.
Mapping new vocabularies to the UMLS: Experience with ICF.
11th Annual North American Collaborating Center (NACC) Conference on the International
Classification of Functioning, Disability and Health (ICF), Mayo Clinic, Rochester, MN,
June 21, 2005.
[download PDF]
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Bodenreider O.
From terminology integration to information integration: An example in the domain of
genomics.
Biomedical Computing Interest Group,
NIH,
May 19, 2005.
[download PDF]
-
Bodenreider O.
Lexical and statistical approaches to acquiring ontological relations.
Conference on Ontology and
Biomedical Informatics, Rome, Italy,
May 1, 2005.
[download PDF]
-
Bodenreider O.
Analyzing anatomical ontologies with the RCC-8 model
Conference on Mapping
the Human Body, University at Buffalo, NY,
April 17, 2005.
[download PDF]
-
Bodenreider O.
Consistency between Metathesaurus and Semantic Network
Conference on The Future of the
UMLS Semantic Network, National Library of Medicine,
April 8, 2005.
[download PDF]
2004
-
Bodenreider O.
Introduction to the Unified Medical Language System
School of Nursing, Johns Hopkins University, Baltimore, Maryland,
December 16, 2004.
[download PDF]
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Bodenreider O.
The Unified Medical Language System: Identifying relations among biomedical
terms
Workshop on Knowledge, Language and Informatics, Laboratoire d'Informatique de Paris-Nord,
Villetaneuse, France,
December 7, 2004.
[download PDF]
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Bodenreider O.
The Unified Medical Language System: A two-level structure
INSERM ERM 202, Paris, France,
December 6, 2004.
[download PDF]
-
Bodenreider O.
From terminology integration to information integration: An example in the domain of
genomics.
Forum on Informatics Solutions, NIH/NCRR, Bethesda, Maryland,
December 3, 2004.
[download PDF]
-
Bodenreider O.
What do biomedical terminologies tell us about biomedicine?
Conference on Medicine and Metaphysics, University at Buffalo, NY,
November 13, 2004.
[download PDF]
-
Bodenreider O.
Large formal ontologies for biomedicine.
Panel at MedInfo 2004, San Francisco, California,
September 10, 2004.
[download PDF]
-
Bodenreider O.
Foundational issues in biomedical ontologies.
Workshop at MedInfo 2004, San Francisco, California,
September 9, 2004.
[download PDF]
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Bodenreider O, Willis J, and Hole WT.
The Unified Medical Language System: What is it and how to use it?
Tutorial at MedInfo 2004, San Francisco, California,
September 8, 2004.
[download PDF (presentation)]
[download PDF (handouts)]
-
Bodenreider O.
Biomedical knowledge visualization.
Second Workshop on Visualizing Information in Knowledge Engineering (VIKE'04),
July 6, 2004.
[download PDF]
-
Bodenreider O.
Medical knowledge representation: Issues, challenges, and new directions.
Panel on "Medical knowledge representation" at the First International Workshop
on Formal Biomedical Knowledge Representation (KR-MED 2004),
June 1, 2004.
[download PDF]
2003
-
Bodenreider O.
Information integration through terminology integration.
AMIA 2003 Panel "NLP for Biomedical Applications: Bridging Basic and Clinical
Science",
November 12, 2003.
[download PDF]
-
Bodenreider O.
From terminology integration to information integration: An example in the domain of
genetics.
School of Information and Library Science, University of North Carolina at Chapel
Hill,
October 27, 2003.
[download PDF]
-
Bodenreider O.
From biomedical language to biomedical knowledge: Uncovering relations expressed through
reification and other linguistic phenomena
Workshop on Ontologies in Medicine, Rome, Italy,
October 8, 2003.
[download PDF]
-
Bodenreider O.
Issues and perspectives for medical text indexing
Workshop on the Semantic Web at the MIE 2003 Conference, St-Malo, France,
May 6, 2003.
[download PDF]
-
Bodenreider O.
The Unified Medical Language System: What is it and how to use it?
Tutorial at the MIE 2003 Conference, St-Malo, France,
May 4, 2003.
[download PDF]
-
Bodenreider O.
The Unified Medical Language System (UMLS): Between Terminology and Ontology
Columbia University, Department of Medical Informatics,
April 29, 2002.
[download PDF]
-
Bodenreider O.
Integrating GO into UMLS
Pacific Symposium on Biocomputing, Kauai, Hawaii,
January 7, 2003.
[download PDF]
2002
-
Bodenreider O, Hole WT, Humphreys BL, Roth LA, Srinivasan S.
Customizing the UMLS Metathesaurus for your applications
Tutorial at the AMIA 2002 Symposium, San Antonio, Texas,
November 9, 2002.
[download PDF]
-
Bodenreider O.
From terminology integration to interoperability
Workshop on "Information Technologies for Healthcare: Barriers to Implementation", National
Institute of Standards and Technology,
August 1, 2002.
[download PDF]
-
Bodenreider O.
Issues in the visualization and navigation of biomedical knowledge
New Jersey Institute of Technology, College of Computing Sciences, Computer Science
Department,
April 29, 2002.
[download PDF]
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Bodenreider O, Burgun A.
From UMLS concept spaces to a biomedical ontology.
Ontological Spring: An Introductory Workshop in Ontology, Institute for Formal Ontology and
Medical Information Science, Naumburg, Germany,
April 20, 2002.
[download PDF]
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Bodenreider O, Burgun A.
What needs to be represented in a biomedical ontology?
Ontological Spring: An Introductory Workshop in Ontology, Institute for Formal Ontology and
Medical Information Science, Naumburg, Germany,
April 20, 2002.
[download PDF]
-
Burgun A, Bodenreider O.
Ontologies, Terminologies and Knowledge Bases in the Biomedical Domain
Ontological Spring: An Introductory Workshop in Ontology, Institute for Formal Ontology and
Medical Information Science, Naumburg, Germany,
April 19, 2002.
[download PDF]
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Burgun A, Bodenreider O.
Examples of ontologies in the biomedical domain.
Ontological Spring: An Introductory Workshop in Ontology, Institute for Formal Ontology and
Medical Information Science, Naumburg, Germany,
April 19, 2002.
[download PDF]
-
Bodenreider O.
The U.S. National Library of Medicine. [French]
Journées ÉMOIS,
March 21, 2002.
[download PDF]
2001
-
Bodenreider O.
Issues in the organization of biomedical knowledge.
School of Information and Library Science, University of North Carolina at Chapel
Hill,
December 3, 2001.
[download PDF]
-
Bodenreider O, Hole WT, Humphreys BL, Roth LA, Srinivasan S.
Customizing the UMLS Metathesaurus for your applications
Tutorial at the AMIA 2001 Symposium, Washington, D.C.,
November 3, 2001.
[download PDF]
