A C D E F G H I K L M N O P Q R S T U V

G

GenDefaultSynonymsFile - Class in gov.nih.nlm.nls.stmt.Synonym

This program is used to read synonyms from 8 synonym files from UMLS-Core project and generate one standard normalized synonym file.

GenSynonymsFileFromAFile - Class in gov.nih.nlm.nls.stmt.Synonym

This program is used to read synonyms from a user'a synonym file to generate a standard normalized synonym file.

GenSynonymsFileFromFiles - Class in gov.nih.nlm.nls.stmt.Synonym

This program is used to add synonyms from a user'a synonym file to a standard * normalized synonym file and then generate a standard normalized synonym file.

GetAbsolutePath(String, String) - Static method in class gov.nih.nlm.nls.stmt.Lib.Configuration

Return the absoluate path of the in file.

GetAllPatterns(String, Vector<Subterm>, boolean) - Static method in class gov.nih.nlm.nls.stmt.Api.SubtermPatternApi

Convert subterms and inTerm to subterm patterns.

GetAllPrefixSubterms(String) - Method in class gov.nih.nlm.nls.stmt.Api.StmtApi

Get the all prefix subterms.

GetChildren() - Method in class gov.nih.nlm.nls.stmt.Corpus.TreeNode

Get children of the node

GetChildrenNo() - Method in class gov.nih.nlm.nls.stmt.Corpus.TreeNode

Get the total number of children of the node

GetConfig() - Method in class gov.nih.nlm.nls.stmt.CmdLine.CmdLineArgsConfig

GetConfig(String, String) - Method in class gov.nih.nlm.nls.stmt.CmdLine.CmdLineArgsConfig

GetConfig() - Method in class gov.nih.nlm.nls.stmt.CmdLine.CmdLineConfig

GetConfig(String, String) - Method in class gov.nih.nlm.nls.stmt.CmdLine.CmdLineConfig

GetConfigBoolean(String) - Method in class gov.nih.nlm.nls.stmt.CmdLine.CmdLineArgsConfig

GetConfigBoolean(String) - Method in class gov.nih.nlm.nls.stmt.CmdLine.CmdLineConfig

GetConfigInfo() - Method in class gov.nih.nlm.nls.stmt.CmdLine.CmdLineArgsConfig

GetConfigInt(String) - Method in class gov.nih.nlm.nls.stmt.CmdLine.CmdLineArgsConfig

GetConfigInt(String) - Method in class gov.nih.nlm.nls.stmt.CmdLine.CmdLineConfig

GetConfigStr(String) - Method in class gov.nih.nlm.nls.stmt.CmdLine.CmdLineArgsConfig

GetConfigStr(String) - Method in class gov.nih.nlm.nls.stmt.CmdLine.CmdLineConfig

GetConfiguration() - Method in class gov.nih.nlm.nls.stmt.Api.StmtApi

Get the configuration object of Stmt Api object.

GetConfiguration(String) - Method in class gov.nih.nlm.nls.stmt.Lib.Configuration

Get a value from configuration file by specifying the key.

GetConnection() - Method in class gov.nih.nlm.nls.stmt.Api.LsfApi

Get the database connection object.

GetConnection() - Method in class gov.nih.nlm.nls.stmt.Api.SmtApi

Get the database connection object.

GetCuis(String, Connection) - Static method in class gov.nih.nlm.nls.stmt.Db.DbCuis

Get all unique CUIs for a specified term from SMT database.

GetCuis(String, Hashtable<String, HashSet<String>>) - Static method in class gov.nih.nlm.nls.stmt.Meta.Cuis

Find unique CUIs for a normalized term from a CUI table.

GetCuisFile - Class in gov.nih.nlm.nls.stmt.Meta

This program is to get non-suppress normTerm|Cui file.

GetDetailString() - Method in class gov.nih.nlm.nls.stmt.Corpus.TreeNode

Convert the node to a string in detail

GetEndIndex() - Method in class gov.nih.nlm.nls.stmt.Pattern.PatternElement

Get the ending position of the pattern element.

GetEndIndex() - Method in class gov.nih.nlm.nls.stmt.Subterm.Subterm

Get the end index (position) of the subterm.

GetEuis(String, Connection) - Static method in class gov.nih.nlm.nls.stmt.Db.DbEuis

Get all unique EUIs for a specified term from STMT database.

GetEuis(String, Hashtable<String, HashSet<String>>) - Static method in class gov.nih.nlm.nls.stmt.Lex.Euis

Find unique EUIs for a normalized term from a EUI table.

GetEuisFile - Class in gov.nih.nlm.nls.stmt.Lex

This program is to get norm-inflvar|EUI file from inflVars.data.

GetEuisFile() - Constructor for class gov.nih.nlm.nls.stmt.Lex.GetEuisFile

GetHashSet(String, boolean, int) - Static method in class gov.nih.nlm.nls.stmt.Meta.NonSuppressCuis

Get the the set of non-suppress CUIs by loading from a file.

GetHashTable(String, boolean, int) - Static method in class gov.nih.nlm.nls.stmt.Lex.Euis

Get the the key-values table of norm-term|EUIs by loading from a file.

GetHashTable(String, boolean, int) - Static method in class gov.nih.nlm.nls.stmt.Meta.Cuis

Get the the key-values table of term|CUIs by loading from a file.

GetHashTable(String, boolean, int) - Static method in class gov.nih.nlm.nls.stmt.Meta.Pts

Get the the key-value table of CUI|PT by loading from a file.

GetHashTable(String, boolean, int) - Static method in class gov.nih.nlm.nls.stmt.Synonym.Synonyms

Get the the key-values table of norm-term|synonym by loading from a file.

GetInformation() - Method in class gov.nih.nlm.nls.stmt.Lib.Configuration

Get system level information from configuration.

GetKey() - Method in class gov.nih.nlm.nls.stmt.Corpus.TreeNode

Get key of the node

GetKeyValuesTable(String, boolean, int) - Static method in class gov.nih.nlm.nls.stmt.Lib.KeyValuesTable

Get the key-values table by loading all key-values pairs from a file with options of verbose and show loading lineNum.

GetKeyValueTable(String, boolean, int) - Static method in class gov.nih.nlm.nls.stmt.Lib.KeyValueTable

Get the key-value table by loading all key-value pairs from a file with options of verbose and show loading lineNum.

GetLastPeEndIndex() - Method in class gov.nih.nlm.nls.stmt.Pattern.SubtermPattern

Get the ending index of the last pattern element.

GetLegalSyntax(OptionItem, Option) - Static method in class gov.nih.nlm.nls.stmt.CmdLine.OptionApi

GetLevel() - Method in class gov.nih.nlm.nls.stmt.Corpus.TreeNode

Get level of the node

GetLongestPrefixSubterm(String) - Method in class gov.nih.nlm.nls.stmt.Api.StmtApi

Get the longest prefix subterm.

GetLvgApi() - Method in class gov.nih.nlm.nls.stmt.Api.LsfApi

Get the LvgApi java object.

GetLvgApi() - Method in class gov.nih.nlm.nls.stmt.Api.SmtHtApi

Get the LvgApi java object.

GetMaxChildrenNoForLevel(Collection<TreeNode>, int) - Static method in class gov.nih.nlm.nls.stmt.Corpus.Corpus

Get the maximum number of children for a specified level and node list

GetMaxLevel(Collection<TreeNode>) - Static method in class gov.nih.nlm.nls.stmt.Corpus.Corpus

Get the maximum level for a specified the node List.

GetNodeList(Corpus) - Static method in class gov.nih.nlm.nls.stmt.Corpus.Corpus

Get list of total nodes for the tree.

GetNodeListForNode(TreeNode, Collection<TreeNode>) - Static method in class gov.nih.nlm.nls.stmt.Corpus.Corpus

Get total nodes list of a branch under a given node.

GetNonSuppressCuiFile - Class in gov.nih.nlm.nls.stmt.Meta

This program is to get all non suppress CUI from MRCONSO.RRF.

GetNonSuppressCuiFile(String, String) - Static method in class gov.nih.nlm.nls.stmt.Meta.GetNonSuppressCuiFile

Get the non-suppress CUI|LUI|SUI file from files.

GetNonSuppressNormTermCuisFromFile(String, String, String) - Static method in class gov.nih.nlm.nls.stmt.Meta.GetCuisFile

Get the non-suppress Norm-terms|CUI file from files.

GetNormInflVarEuiFile(String, String, LvgApi) - Static method in class gov.nih.nlm.nls.stmt.Lex.GetEuisFile

Get the Norm-InflVars|EUI file from a input file.

GetOptions(String) - Static method in class gov.nih.nlm.nls.stmt.CmdLine.CmdLineArgs

GetOutString() - Static method in class gov.nih.nlm.nls.stmt.CmdLine.CmdLineOut

Get the output String

GetPathList(Corpus) - Static method in class gov.nih.nlm.nls.stmt.Corpus.Corpus

Get the total path list in the tree.

GetPathListForNode(TreeNode, Collection<String>, String) - Static method in class gov.nih.nlm.nls.stmt.Corpus.Corpus

Get the total path list in the tree for a given node.

GetPattern() - Method in class gov.nih.nlm.nls.stmt.Pattern.SubtermPattern

Get the subterm pattern - a collection of subterm pattern elements.

GetPattern() - Method in class gov.nih.nlm.nls.stmt.Pattern.SynonymPattern

Get the synonym pattern - a collection of synonym pattern elements.

GetPatternsBySubtermNo(String, Vector<Subterm>, int, boolean) - Static method in class gov.nih.nlm.nls.stmt.Api.SubtermPatternApi

Convert subterms and inTerm to subterm patterns by specifying subterm numbers.

GetPatternsBySubtermNo(int, Vector<SubtermPattern>) - Static method in class gov.nih.nlm.nls.stmt.Api.SubtermPatternApi

Convert subterms and inTerm to subterm patterns by specifying subterm numbers and subterm patterns (include 1 ~ subtermNo).

GetPatternsStr(Vector<SubtermPattern>) - Static method in class gov.nih.nlm.nls.stmt.Api.SubtermPatternApi

Get string representation of subterm patterns.

GetPatternsStr(Vector<SynonymPattern>) - Static method in class gov.nih.nlm.nls.stmt.Api.SynonymPatternApi

Get string representation of synonym patterns.

GetPatternsUpToSubtermNo(String, Vector<Subterm>, int, boolean) - Static method in class gov.nih.nlm.nls.stmt.Api.SubtermPatternApi

Convert subterms and inTerm to subterm patterns by specifying the max subterm numbers.

GetPeEndIndexAt(int) - Method in class gov.nih.nlm.nls.stmt.Pattern.SubtermPattern

Get the ending index of pattern element (index)

GetPermutations(Vector<SynonymPattern>) - Static method in class gov.nih.nlm.nls.stmt.Api.SynonymSubstitutionApi

Get all permutation strings for a collection of synonym patterns.

GetPermutationsPerPattern(SynonymPattern) - Static method in class gov.nih.nlm.nls.stmt.Api.SynonymSubstitutionApi

Get permutation strings for one SynonymPattern.

GetPeStartIndexAt(int) - Method in class gov.nih.nlm.nls.stmt.Pattern.SubtermPattern

Get the starting index of pattern element (index)

GetPrefereredTermFile(String, String) - Static method in class gov.nih.nlm.nls.stmt.Meta.GetPtFile

Get the preferred term from file.

GetPromptFlag() - Method in class gov.nih.nlm.nls.stmt.CmdLine.CmdLine

GetPt(String, Connection) - Static method in class gov.nih.nlm.nls.stmt.Db.DbPts

Get preferred term for a specified CUI from SMT database.

GetPtFile - Class in gov.nih.nlm.nls.stmt.Meta

This program is to get all preferred terms for CUI from MRCONSO.RRF.

GetRoot() - Method in class gov.nih.nlm.nls.stmt.Corpus.Corpus

Get the root node of the corpus tree.

GetSetTabe(String, boolean, int) - Static method in class gov.nih.nlm.nls.stmt.Lib.SetTable

Get the set table by loading all terms from a file with options of verbose and show loading lineNum.

GetSize() - Method in class gov.nih.nlm.nls.stmt.Pattern.SubtermPattern

Get the total number of subterm pattern elements in the subterm pattern.

GetSize() - Method in class gov.nih.nlm.nls.stmt.Pattern.SynonymPattern

Get the total number of subterm pattern elements in the synonym pattern.

GetSortedCuis(String, Connection) - Static method in class gov.nih.nlm.nls.stmt.Db.DbCuis

Get all sorted unique CUIs for a specified term from SMT database.

GetSortedCuis(String, Hashtable<String, HashSet<String>>) - Static method in class gov.nih.nlm.nls.stmt.Meta.Cuis

Find sorted unique CUIs for a normalized term from a CUI table.

GetSortedEuis(String, Connection) - Static method in class gov.nih.nlm.nls.stmt.Db.DbEuis

Get all sorted unique EUIs for a specified term from SMT database.

GetSortedEuis(String, Hashtable<String, HashSet<String>>) - Static method in class gov.nih.nlm.nls.stmt.Lex.Euis

Find sorted unique EUIs for a normalized term from a EUI table.

GetSortedPermutations(Vector<SynonymPattern>) - Static method in class gov.nih.nlm.nls.stmt.Api.SynonymSubstitutionApi

Get all sorted permutation strings for a collection of synonym patterns.

GetSortedSynonyms(String, Hashtable<String, HashSet<String>>) - Static method in class gov.nih.nlm.nls.stmt.Synonym.Synonyms

Find sorted unique synonyms for a normalized term from a synonym table.

GetSortedValues(String, Hashtable<String, HashSet<String>>) - Static method in class gov.nih.nlm.nls.stmt.Lib.KeyValuesTable

Get sorted unique values for a key in the key-values table.

GetStartIndex() - Method in class gov.nih.nlm.nls.stmt.Pattern.PatternElement

Get the starting position of the pattern element.

GetStartIndex() - Method in class gov.nih.nlm.nls.stmt.Subterm.Subterm

Get the start index (position) of the subterm.

GetSubterm() - Method in class gov.nih.nlm.nls.stmt.Pattern.PatternElement

Get the term of the pattern element.

GetSubterm() - Method in class gov.nih.nlm.nls.stmt.Subterm.Subterm

Get the term (word) of the subterm.

GetSubtermFlag() - Method in class gov.nih.nlm.nls.stmt.Pattern.SubtermPatternElement

Get the subterm flag of the subterm pattern element.

GetSubtermNo() - Method in class gov.nih.nlm.nls.stmt.Pattern.SubtermPattern

Get the total number of subterm in the subterm pattern.

GetSubtermNo() - Method in class gov.nih.nlm.nls.stmt.Pattern.SynonymPattern

Get the total number of subterm in the synonym pattern.

GetSubtermsStr(Vector<Subterm>) - Static method in class gov.nih.nlm.nls.stmt.Api.SubtermApi

Get string representation of subterms.

GetSubtermStrs(String) - Method in class gov.nih.nlm.nls.stmt.Api.StmtApi

Get all possible subterms of the input term in the corpus.

GetSynonymPatterns(Vector<SubtermPattern>, Hashtable<String, HashSet<String>>) - Static method in class gov.nih.nlm.nls.stmt.Api.SynonymPatternApi

Convert from subterm pattern to synonym pattern

GetSynonyms() - Method in class gov.nih.nlm.nls.stmt.Pattern.SynonymPatternElement

Get the synonymous terms of the term of synonym pattern element.

GetSynonyms(String, Hashtable<String, HashSet<String>>) - Static method in class gov.nih.nlm.nls.stmt.Synonym.Synonyms

Find unique synonyms for a normalized term from a synonym table.

GetSynonymSubsititution(String) - Method in class gov.nih.nlm.nls.stmt.Api.StmtApi

Get all possible permutation of synonym subterm substitutions.

GetSynonymSubsititutionBySubtermNo(String, int, boolean) - Method in class gov.nih.nlm.nls.stmt.Api.StmtApi

Get all synonym sustitutions (sorted) by specifying the subterm number.

GetSynonymSubsititutionBySubtermNo(String, int) - Method in class gov.nih.nlm.nls.stmt.Api.StmtApi

Get all synonym sustitutions (sorted) by specifying the subterm number.

GetSynTable() - Method in class gov.nih.nlm.nls.stmt.Api.StmtApi

Get the key-values synonym table of Stmt Api object.

GetToolName() - Method in class gov.nih.nlm.nls.stmt.CmdLine.CmdLineArgsConfig

GetTotalNodeNo(Corpus) - Static method in class gov.nih.nlm.nls.stmt.Corpus.Corpus

Get the total number of tree nodes in the corpus tree

GetTotalPathNo(Corpus) - Static method in class gov.nih.nlm.nls.stmt.Corpus.Corpus

Get the total number of branches (paths) in the corpus tree

GetTotalTermNo(Corpus) - Static method in class gov.nih.nlm.nls.stmt.Corpus.Corpus

Get the total number of terms in the corpus

GetTreeString(Corpus) - Static method in class gov.nih.nlm.nls.stmt.Corpus.Corpus

Get the entire corpus tree in a string format

GetTreeStringForNode(TreeNode, String) - Static method in class gov.nih.nlm.nls.stmt.Corpus.Corpus

Get the sub-tree (branch) string for a given node

GetValue(String, Hashtable<String, String>) - Static method in class gov.nih.nlm.nls.stmt.Lib.KeyValueTable

Get the mapping value for the key in the key-value table.

GetValues(String, Hashtable<String, HashSet<String>>) - Static method in class gov.nih.nlm.nls.stmt.Lib.KeyValuesTable

Get unique values for a key in the key-values table.

GetWordCount() - Method in class gov.nih.nlm.nls.stmt.Pattern.SubtermPattern

Get the total words count of pattern.

Globals - Class in gov.nih.nlm.nls.stmt.Lib

This class provides STMT Global Behavior related definition, variables, and methods.

gov.nih.nlm.nls.stmt.Api - package gov.nih.nlm.nls.stmt.Api

Contains STMT API classes.

gov.nih.nlm.nls.stmt.CmdLine - package gov.nih.nlm.nls.stmt.CmdLine

Contains generic classes for command line tool used in STMT.

gov.nih.nlm.nls.stmt.Corpus - package gov.nih.nlm.nls.stmt.Corpus

Contains STMT corpus tree classes.

gov.nih.nlm.nls.stmt.Db - package gov.nih.nlm.nls.stmt.Db

Contains STMT database classes.

gov.nih.nlm.nls.stmt.Lex - package gov.nih.nlm.nls.stmt.Lex

Contains STMT Lexicon classes.

gov.nih.nlm.nls.stmt.Lib - package gov.nih.nlm.nls.stmt.Lib

Contains STMT general library classes.

gov.nih.nlm.nls.stmt.Meta - package gov.nih.nlm.nls.stmt.Meta

Contains STMT MetaThesaurus classes.

gov.nih.nlm.nls.stmt.Norm - package gov.nih.nlm.nls.stmt.Norm

Contains STMT normalization classes.

gov.nih.nlm.nls.stmt.Pattern - package gov.nih.nlm.nls.stmt.Pattern

Contains STMT pattern classes.

gov.nih.nlm.nls.stmt.Post - package gov.nih.nlm.nls.stmt.Post

Contains STMT post-process classes.

gov.nih.nlm.nls.stmt.Subterm - package gov.nih.nlm.nls.stmt.Subterm

Contains STMT sub-term classes.

gov.nih.nlm.nls.stmt.Synonym - package gov.nih.nlm.nls.stmt.Synonym

Contains STMT synonym classes.

gov.nih.nlm.nls.stmt.Tools - package gov.nih.nlm.nls.stmt.Tools

Contains STMT Tools classes.

A C D E F G H I K L M N O P Q R S T U V