A C D E F G H I K L M N O P Q R S T U V

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SetChildren(HashMap<String, TreeNode>) - Method in class gov.nih.nlm.nls.stmt.Corpus.TreeNode

Set the value of children.

SetCorpusFile(String) - Method in class gov.nih.nlm.nls.stmt.Api.StmtApi

Set the corpus file for Stmt Api object.

SetCuiFile(String) - Method in class gov.nih.nlm.nls.stmt.Api.SmtHtApi

Set the CUI mapping file.

SetDefaultConfigFile(String) - Method in class gov.nih.nlm.nls.stmt.CmdLine.CmdLineArgsConfig

SetDefaultConfigFile(String) - Method in class gov.nih.nlm.nls.stmt.CmdLine.CmdLineConfig

SetEndIndex(int) - Method in class gov.nih.nlm.nls.stmt.Subterm.Subterm

Set the end index (position) of the subterm.

SetLocalDefaultOption() - Method in class gov.nih.nlm.nls.stmt.CmdLine.CmdLineArgs

SetLocalDefaultOption() - Method in class gov.nih.nlm.nls.stmt.Tools.Lsf

SetLocalDefaultOption() - Method in class gov.nih.nlm.nls.stmt.Tools.MapTool

SetLocalDefaultOption() - Method in class gov.nih.nlm.nls.stmt.Tools.NormTool

SetLocalDefaultOption() - Method in class gov.nih.nlm.nls.stmt.Tools.Smt

SetLocalDefaultOption() - Method in class gov.nih.nlm.nls.stmt.Tools.Stmt

SetLocalFlagStr() - Method in class gov.nih.nlm.nls.stmt.CmdLine.CmdLineArgs

SetLocalFlagStr() - Method in class gov.nih.nlm.nls.stmt.Tools.Lsf

SetLocalFlagStr() - Method in class gov.nih.nlm.nls.stmt.Tools.MapTool

SetLocalFlagStr() - Method in class gov.nih.nlm.nls.stmt.Tools.NormTool

SetLocalFlagStr() - Method in class gov.nih.nlm.nls.stmt.Tools.Smt

SetLocalFlagStr() - Method in class gov.nih.nlm.nls.stmt.Tools.Stmt

SetLocalOptions() - Method in class gov.nih.nlm.nls.stmt.CmdLine.CmdLineArgs

SetLocalOptions() - Method in class gov.nih.nlm.nls.stmt.Tools.Lsf

SetLocalOptions() - Method in class gov.nih.nlm.nls.stmt.Tools.MapTool

SetLocalOptions() - Method in class gov.nih.nlm.nls.stmt.Tools.NormTool

SetLocalOptions() - Method in class gov.nih.nlm.nls.stmt.Tools.Smt

SetLocalOptions() - Method in class gov.nih.nlm.nls.stmt.Tools.Stmt

SetLvgConfigFile(String) - Method in class gov.nih.nlm.nls.stmt.Api.SmtHtApi

Set configuration file of LvgApi object.

SetOptionFlags() - Method in class gov.nih.nlm.nls.stmt.CmdLine.CmdLineArgs

SetOptionFlags() - Method in class gov.nih.nlm.nls.stmt.CmdLine.CmdLineArgsConfig

SetPrompStr(String) - Method in class gov.nih.nlm.nls.stmt.CmdLine.CmdLine

SetStartIndex(int) - Method in class gov.nih.nlm.nls.stmt.Subterm.Subterm

Set the start index (position) of the subterm.

SetSubterm(String) - Method in class gov.nih.nlm.nls.stmt.Pattern.PatternElement

Set the term of the pattern element.

SetSubterm(String) - Method in class gov.nih.nlm.nls.stmt.Subterm.Subterm

Set the term (word) of the subterm.

SetSubtermFlag(boolean) - Method in class gov.nih.nlm.nls.stmt.Pattern.SubtermPatternElement

Set the subterm flag of the subterm pattern element.

SetSynonymFile(String) - Method in class gov.nih.nlm.nls.stmt.Api.StmtApi

Set the synonym file for Stmt Api object.

SetSynonyms(Vector<String>) - Method in class gov.nih.nlm.nls.stmt.Pattern.SynonymPatternElement

Set the synonymous terms of the term of synonym pattern element.

SetSystemOptionFullName(String, String) - Method in class gov.nih.nlm.nls.stmt.CmdLine.CmdLineArgs

SetTable - Class in gov.nih.nlm.nls.stmt.Lib

This program is to used to load Strings to a Set table from a file.

SetToolDescription(String) - Method in class gov.nih.nlm.nls.stmt.CmdLine.CmdLineArgsConfig

SetToolInfo() - Method in class gov.nih.nlm.nls.stmt.CmdLine.CmdLine

SetToolInfo() - Method in class gov.nih.nlm.nls.stmt.Tools.Lsf

SetToolInfo() - Method in class gov.nih.nlm.nls.stmt.Tools.MapTool

SetToolInfo() - Method in class gov.nih.nlm.nls.stmt.Tools.NormTool

SetToolInfo() - Method in class gov.nih.nlm.nls.stmt.Tools.Smt

SetToolInfo() - Method in class gov.nih.nlm.nls.stmt.Tools.Stmt

SetToolName(String) - Method in class gov.nih.nlm.nls.stmt.CmdLine.CmdLineArgsConfig

SetToolVersion(String) - Method in class gov.nih.nlm.nls.stmt.CmdLine.CmdLineArgsConfig

SetValues() - Method in class gov.nih.nlm.nls.stmt.CmdLine.CmdLine

SetValues() - Method in class gov.nih.nlm.nls.stmt.CmdLine.CmdLineArgs

SetValues() - Method in class gov.nih.nlm.nls.stmt.CmdLine.CmdLineArgsConfig

SetValues() - Method in class gov.nih.nlm.nls.stmt.CmdLine.CmdLineConfig

SetValuesByCmdLineOptions() - Method in class gov.nih.nlm.nls.stmt.CmdLine.CmdLineArgs

SetValuesByDefault() - Method in class gov.nih.nlm.nls.stmt.CmdLine.CmdLine

Smt - Class in gov.nih.nlm.nls.stmt.Tools

This class is the command line tool for Synonym Mapping Tool (SMT).

Smt() - Constructor for class gov.nih.nlm.nls.stmt.Tools.Smt

Create a LSF tool object (default).

SmtApi - Class in gov.nih.nlm.nls.stmt.Api

This class includes high level APIs for Synonym Mapping Tool (SMT).

SmtApi() - Constructor for class gov.nih.nlm.nls.stmt.Api.SmtApi

Create Smt Api object by default values.

SmtApi(String) - Constructor for class gov.nih.nlm.nls.stmt.Api.SmtApi

Create Smt Api object by specifying configuration file.

SmtApi(Configuration) - Constructor for class gov.nih.nlm.nls.stmt.Api.SmtApi

Create Smt Api object by specifying configuration object.

SmtHtApi - Class in gov.nih.nlm.nls.stmt.Api

This class includes high level APIs for Synonym Mapping Tool (SMT) uses HashTable for concpet mapping.

SmtHtApi() - Constructor for class gov.nih.nlm.nls.stmt.Api.SmtHtApi

Create Smt Api object by default values.

SmtHtApi(String) - Constructor for class gov.nih.nlm.nls.stmt.Api.SmtHtApi

Create Smt Api object by specifying synonym file.

SPACE_STR - Static variable in class gov.nih.nlm.nls.stmt.Lib.Globals

space string

Stmt - Class in gov.nih.nlm.nls.stmt.Tools

This class is the command line tool for Sub-Term Mapping Tool (STMT).

Stmt() - Constructor for class gov.nih.nlm.nls.stmt.Tools.Stmt

StmtApi - Class in gov.nih.nlm.nls.stmt.Api

This class includes high level core APIs for STMT.

StmtApi() - Constructor for class gov.nih.nlm.nls.stmt.Api.StmtApi

Create Stmt Api object by default values.

StmtApi(String) - Constructor for class gov.nih.nlm.nls.stmt.Api.StmtApi

Create Stmt Api object by specifying the configuration file.

StmtApi(Configuration) - Constructor for class gov.nih.nlm.nls.stmt.Api.StmtApi

Create Stmt Api object by specifying the configuration object.

StmtApi(String, String) - Constructor for class gov.nih.nlm.nls.stmt.Api.StmtApi

Create Stmt Api object by specifying the synonym and corpus files.

stmtApi_ - Variable in class gov.nih.nlm.nls.stmt.Tools.Stmt

StmtApiApp - Class in gov.nih.nlm.nls.stmt.Api

This class is the command line tool for Sub-Term Mapping Tool (STMT).

StmtApiApp() - Constructor for class gov.nih.nlm.nls.stmt.Api.StmtApiApp

Create Stmt Api object by default values.

StmtApiApp(Configuration) - Constructor for class gov.nih.nlm.nls.stmt.Api.StmtApiApp

Create Stmt Api object by specifying the configuration object.

StrReplace(String, String, String) - Static method in class gov.nih.nlm.nls.stmt.Lib.Globals

Replace a source subString with a target string in an input string.

Subterm - Class in gov.nih.nlm.nls.stmt.Subterm

This program is Java Object for Subterm.

Subterm() - Constructor for class gov.nih.nlm.nls.stmt.Subterm.Subterm

Create a subterm object using default value.

Subterm(String, int, int) - Constructor for class gov.nih.nlm.nls.stmt.Subterm.Subterm

Create a subterm object by specifying subterm, stand and end position.

SubtermApi - Class in gov.nih.nlm.nls.stmt.Api

This class includes all sub-term related static methods.

SubtermComparator<T> - Class in gov.nih.nlm.nls.stmt.Subterm

This program is Java class for Subterm comparator.

SubtermComparator() - Constructor for class gov.nih.nlm.nls.stmt.Subterm.SubtermComparator

SubtermPattern - Class in gov.nih.nlm.nls.stmt.Pattern

This program is Java Object for subterm pattern.

SubtermPattern() - Constructor for class gov.nih.nlm.nls.stmt.Pattern.SubtermPattern

Create a subterm pattern by default value.

SubtermPattern(Vector<SubtermPatternElement>) - Constructor for class gov.nih.nlm.nls.stmt.Pattern.SubtermPattern

Create a subterm pattern by specifying the subterm pattern.

SubtermPatternApi - Class in gov.nih.nlm.nls.stmt.Api

This class includes static methods to convert subterms to subtermPatterns.

SubtermPatternElement - Class in gov.nih.nlm.nls.stmt.Pattern

This program is Java Object for subterm pattern element.

SubtermPatternElement() - Constructor for class gov.nih.nlm.nls.stmt.Pattern.SubtermPatternElement

Create subterm pattern element with default value.

SubtermPatternElement(String) - Constructor for class gov.nih.nlm.nls.stmt.Pattern.SubtermPatternElement

Create subterm pattern element by specifying subterm.

SubtermPatternElement(String, int, boolean) - Constructor for class gov.nih.nlm.nls.stmt.Pattern.SubtermPatternElement

Create subterm pattern element by specifying subterm, starting position, and subterm flag.

synFile_ - Variable in class gov.nih.nlm.nls.stmt.Api.StmtApi

file name of synonyms, the keySet is used for terms of corpus

SYNONYM_FILE - Static variable in class gov.nih.nlm.nls.stmt.Lib.Configuration

key for the path of synonym file defined in configuration file

SynonymNorm - Class in gov.nih.nlm.nls.stmt.Norm

This program is a java class to nomalized synonyms.

SynonymPattern - Class in gov.nih.nlm.nls.stmt.Pattern

This program is Java Object for synonym pattern.

SynonymPattern() - Constructor for class gov.nih.nlm.nls.stmt.Pattern.SynonymPattern

Create a synonym pattern by default value.

SynonymPattern(Vector<SynonymPatternElement>) - Constructor for class gov.nih.nlm.nls.stmt.Pattern.SynonymPattern

Create a synonym pattern by specifying the synonym pattern.

SynonymPatternApi - Class in gov.nih.nlm.nls.stmt.Api

This class provides static method to convert subterm patterns to synonym patterns.

SynonymPatternElement - Class in gov.nih.nlm.nls.stmt.Pattern

This program is Java Object for synonym pattern element.

SynonymPatternElement() - Constructor for class gov.nih.nlm.nls.stmt.Pattern.SynonymPatternElement

Create a synonym pattern element by default value.

SynonymPatternElement(String) - Constructor for class gov.nih.nlm.nls.stmt.Pattern.SynonymPatternElement

Create a synonym pattern element by specifying subterm.

SynonymPatternElement(String, int) - Constructor for class gov.nih.nlm.nls.stmt.Pattern.SynonymPatternElement

Create a synonym pattern element by specifying subterm and start position.

SynonymPatternElement(String, int, Vector<String>) - Constructor for class gov.nih.nlm.nls.stmt.Pattern.SynonymPatternElement

Create a synonym pattern element by specifying subterm, start position, and synonymous terms of the subterm.

SynonymPatternElement(SubtermPatternElement) - Constructor for class gov.nih.nlm.nls.stmt.Pattern.SynonymPatternElement

Create a synonym pattern element by specifying subterm pattern element.

Synonyms - Class in gov.nih.nlm.nls.stmt.Synonym

This program is used to read normalized term (key) and synonyms (values) from normTermSynonym.data (no duplicates) and load in to a hashtable Hashtable<String, HashSet<String>>.

SynonymsTable - Class in gov.nih.nlm.nls.stmt.Synonym

This program is used to load synonyms to synonoym table from files including normalization.

SynonymSubstitutionApi - Class in gov.nih.nlm.nls.stmt.Api

This class includes static methods of synonym substitution permutation.

synTable_ - Variable in class gov.nih.nlm.nls.stmt.Api.StmtApi

Hashtable for synonyms mapping

systemOption_ - Variable in class gov.nih.nlm.nls.stmt.CmdLine.CmdLineArgs

A C D E F G H I K L M N O P Q R S T U V