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Computer-aided TB Screening on Chest X-rays

banner image collage showing 4 pictures: portable x-ray device, mobile x-ray truck, chest-xray, and map of Kenya
Project information

We are collaborating with AMPATH (Academic Model Providing Access to Healthcare), an organization supported by USAID that runs the largest AIDS treatment program in the world. This project uses LHNCBC’s imaging research and system development to fulfill NIH global health policy objectives. Our objective is to leverage in-house expertise in image processing to screen HIV-positive patients in rural Kenya for evidence of pulmonary tuberculosis (TB) in chest x-rays. Since chest radiography is important to the detection of TB and other pulmonary infections prevalent in HIV-positive patients, we have provided AMPATH with lightweight digital x-ray units readily transportable in rural areas. Their staff will take chest x-rays (CXR) of the population and screen them for the presence of disease. These x-ray units are already on site in the Moi University Hospital in Eldoret, Kenya and are being readied for deployment. The team completed design of vehicles to transport the x-ray units – one vehicle is being outfitted as a mobile x-ray truck.

Since the lack of sufficient radiological services in the area suggests the utility of automation to perform the screening, our in-house research effort focuses on developing software to automatically screen for disease in the CXR images. Our researchers are developing algorithms to automatically segment the lungs, detect and remove ribs, heart, aorta and other structures and then detect texture features characteristic of pulmonary disease,. At present, the algorithms distinguish between 2 cases: abnormal vs. normal. After receiving IRB exemption, we obtained chest x-ray images to use as test and training sets: 400 from Montgomery County’s TB Control Program, 850 from a source in India, and 8,200 from Indiana University. We also acquired an open-source Japanese set containing about 250 x-ray images. We are in the process of receiving a few hundred images from China.

Using these x-rays for training and testing, we have developed algorithms for detecting lungs and ribs focusing on region-based features such as log Gabor wavelets that exploit the orientation of anatomical structures. For lung segmentation, we have developed algorithms using region-based level sets and a novel graph-cut segmentation method, yielding an accuracy of about 95%. A robust identification of lung shape plays a role in detecting TB in CXR since many abnormalities (e.g., pleural effusion) exhibit deformation in lung shape. After extracting the lung fields, the algorithm measures various geometric features that discriminate between normal and effused cases. Ongoing work is in identifying the most successful geometric features.

In parallel, we are developing a binary support vector machine (SVM) classifier that uses several features extracted from the x-rays as input, such as histograms of intensity, gradient magnitude and orientation, shape and curvature. Based on these input features, the SVM returns a confidence value, allowing an operator to inspect cases in which the classifier is uncertain. This initial classifier, showing an accuracy of about 80%, serves as our starting point for ongoing optimization.

Publications/Tools: 
Lure F, Jaeger S, Antani SK. Automated Systems for microscopic and radiographic tuberculosis screening. Electronic Journal of Emerging Infectious Diseases, Vol. 2, No. 1, pp. 5-9, February 2017. [In Chinese]
Karargyris A, Siegelman J, Tzortzis D, Jaeger S, Candemir S, Xue Z, KC S, Vajda S, Antani SK, Folio L, Thoma GR. Combination of texture and shape features to detect pulmonary abnormalities in digital chest X-rays. Int J Comput Assist Radiol Surg. 2016 Jan;11(1):99-106. doi: 10.1007/s11548-015-1242-x. Epub 2015 Jun 20.
Xue Z, Candemir S, Antani SK, Long LR, Jaeger S, Demner-Fushman D, Thoma GR. Foreign Object Detection in Chest X-rays. Proc IEEE International Conference on Bioinformatics and Biomedicine (BIBM) 2015, International Workshop on Biomedical and Health Informatics, Bethesda, Maryland, Nov. 9-12, 2015, pp: 56-61.
Antani SK. Automatic x-ray screening for tuberculosis. SPIE Newsroom. October 2015. DOI: 10.1117/2.1201509.006128
Folio, L, Sigelman, J, Wang, Y, Lu, P, Antani SK, Jaeger S. Automatic Identification and Classification of Tuberculosis Findings on Chest Radiographs for Global Surveillance Programs. Annual Meeting of the American Roentgen Ray Society (ARRS)
KC S, Vajda S, Antani SK, Thoma GR. Automatic Pulmonary Abnormality Screening using Thoracic Edge Map. IEEE, 28th International Symposium on Computer-Based Medical Systems (CBMS), pp. 360-361, 2015.
KC S, Antani SK, Thoma GR. Stitched Multipanel Biomedical Figure Separation. IEEE, 28th International Symposium on Computer-Based Medical Systems (CBMS), pp. 54-59, 2015.
Xue Z, You D, Candemir S, Jaeger S, Antani SK, Long LR, Thoma GR. Chest X-ray Image View Classification The 28th IEEE International Symposium on Computer-Based Medical Systems
Antani SK. Automated Detection of Lung Diseases in Chest X-Rays April 2015 Technical Report to the LHNCBC Board of Scientific Counselors
KC S, Candemir S, Jaeger S, Folio L, Karargyris A, Antani SK, Thoma GR. Automatically detecting rotation in chest radiographs using principal rib-orientation measure for quality control. Int. J. Patt. Recogn. Artif. Intell, Vol 29 No. 2. DOI: 10.1142/S021800141.5570013

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