A B C D E F G I J K L M N O P Q R S T V W

C

CheckData - Class in gov.nih.nlm.nls.tc.LoadDb

This class is used to check a table from DB.

CheckData() - Constructor for class gov.nih.nlm.nls.tc.LoadDb.CheckData

CheckDatabase(Connection, String, String) - Static method in class gov.nih.nlm.nls.tc.LoadDb.CheckData

Check tables in database by specifing database connection, sql queriey.

CheckMhJdScores - Class in gov.nih.nlm.nls.tc.LoadDb

This class is used to check the MhJd table.

CheckMhJdScores() - Constructor for class gov.nih.nlm.nls.tc.LoadDb.CheckMhJdScores

CheckMustOptions() - Method in class gov.nih.nlm.nls.tc.Tools.StWsd

CheckShJdScores - Class in gov.nih.nlm.nls.tc.LoadDb

This class is used to check the ShJd table.

CheckShJdScores() - Constructor for class gov.nih.nlm.nls.tc.LoadDb.CheckShJdScores

CheckWordJdScores - Class in gov.nih.nlm.nls.tc.LoadDb

This class is used to check the WordJd table.

CheckWordJdScores() - Constructor for class gov.nih.nlm.nls.tc.LoadDb.CheckWordJdScores

CheckWordStScores - Class in gov.nih.nlm.nls.tc.LoadDb

This class is used to check the WordSt table.

CheckWordStScores() - Constructor for class gov.nih.nlm.nls.tc.LoadDb.CheckWordStScores

CitationComparator<T extends java.util.Vector<KeyValueObj<java.lang.String,java.util.Vector<java.lang.String>>>> - Class in gov.nih.nlm.nls.tc.MedLine

This class provides methods to compare citation by specified field.

CitationComparator() - Constructor for class gov.nih.nlm.nls.tc.MedLine.CitationComparator

CitationObj - Class in gov.nih.nlm.nls.tc.MedLine

This class is to convert a citation from an input String to a citation object.

CitationObj() - Constructor for class gov.nih.nlm.nls.tc.MedLine.CitationObj

Create the MEDLINE citation object

CitationObjs - Class in gov.nih.nlm.nls.tc.MedLine

This class is to load Citations from a MEDLINE citation file

CitationObjs(boolean) - Constructor for class gov.nih.nlm.nls.tc.MedLine.CitationObjs

Create the MEDLINE citations List objects by specifying verbose.

CitationObjs(String) - Constructor for class gov.nih.nlm.nls.tc.MedLine.CitationObjs

Create the MEDLINE citations List objects by specifying the input string.

CitationObjs(String, boolean) - Constructor for class gov.nih.nlm.nls.tc.MedLine.CitationObjs

Create the MEDLINE citations List objects by specifying the input file.

CleanUp() - Method in class gov.nih.nlm.nls.tc.Util.LexicalTools

Close() - Method in class gov.nih.nlm.nls.tc.Api.JdiApi

Close JDI database connection.

Close() - Method in class gov.nih.nlm.nls.tc.Api.StiApi

Close STI database connection.

Close() - Method in class gov.nih.nlm.nls.tc.Api.StWsdApi

Close STI database connection.

Close() - Method in class gov.nih.nlm.nls.tc.Tools.Jdi

Close the input file, output file, and database.

Close() - Method in class gov.nih.nlm.nls.tc.Tools.Sti

Close the input file, output file, and database.

Close() - Method in class gov.nih.nlm.nls.tc.Tools.Stri

Close the input file, output file, and database.

Close() - Method in class gov.nih.nlm.nls.tc.Tools.StWsd

Close the input file, output file, and database.

CloseConnection(Connection) - Static method in class gov.nih.nlm.nls.tc.Db.DbBase

Close a specified connection (session) with a database

compare(T, T) - Method in class gov.nih.nlm.nls.tc.Jdi.Count1fJdComparator

This method compare two Count1f objects by the specified compare flag.

compare(T, T) - Method in class gov.nih.nlm.nls.tc.Jdi.Count2fJdComparator

This method compares two Count2f JD scores objects by the specified compare flag.

compare(T, T) - Method in class gov.nih.nlm.nls.tc.Jdi.WordSignalWcDcComparator

This method compare two WordSignalWcDc objects by the following order.

compare(T, T) - Method in class gov.nih.nlm.nls.tc.Lib.Count1fComparator

This method compare two Count1f objects by the specified compare flag.

compare(T, T) - Method in class gov.nih.nlm.nls.tc.Lib.Count2fComparator

This method compares two Count2f objects by the specified compare flag.

compare(T, T) - Method in class gov.nih.nlm.nls.tc.MedLine.CitationComparator

This method compare two citation objects by the specified compare flag.

compare(T, T) - Method in class gov.nih.nlm.nls.tc.Sti.Count2fStComparator

This method compares two Count2f ST scores objects by the specified compare flag.

compare(T, T) - Method in class gov.nih.nlm.nls.tc.Sti.SemanticTypeComparator

This method compares two ST objects by the specified compare flag.

compare(T, T) - Method in class gov.nih.nlm.nls.tc.Stri.Count1fStComparator

This method compares two Count1f ST scores objects by the specified compare flag.

compare(T, T) - Method in class gov.nih.nlm.nls.tc.Stri.StJdComparator

This method compares two StJd objects by St index.

conf_ - Variable in class gov.nih.nlm.nls.tc.Api.JdiApi

conf_ - Variable in class gov.nih.nlm.nls.tc.Api.StiApi

conf_ - Variable in class gov.nih.nlm.nls.tc.Api.StWsdApi

configFile_ - Variable in class gov.nih.nlm.nls.tc.Api.JdiApi

configFile_ - Variable in class gov.nih.nlm.nls.tc.Api.MltApi

configFile_ - Variable in class gov.nih.nlm.nls.tc.Api.StiApi

configFile_ - Variable in class gov.nih.nlm.nls.tc.Api.StWsdApi

Configuration - Class in gov.nih.nlm.nls.tc.Lib

This class provides a way of storing and retrieving configurations through a Configuration object.

Configuration(String, boolean) - Constructor for class gov.nih.nlm.nls.tc.Lib.Configuration

Create a Configuration object.

conn_ - Variable in class gov.nih.nlm.nls.tc.Api.JdiApi

ContainsWord(String) - Method in class gov.nih.nlm.nls.tc.Jdi.WordSignalWcDcs

Check if a string is a word in WordSignalWcDc collection

Contractions - Class in gov.nih.nlm.nls.tc.Jdi

This class is to read contractions and expansion from a flat file.

Contractions(String) - Constructor for class gov.nih.nlm.nls.tc.Jdi.Contractions

Create the Contractions list object by specifying the input file.

Contractions(String, boolean) - Constructor for class gov.nih.nlm.nls.tc.Jdi.Contractions

Create the Contractions list object by specifying the input file.

CONTRACTIONS_FILE - Static variable in class gov.nih.nlm.nls.tc.Lib.Configuration

key for the path of contractions file defined in conf file

ConvertToCitationObj(String) - Static method in class gov.nih.nlm.nls.tc.MedLine.CitationObj

Count1f - Class in gov.nih.nlm.nls.tc.Lib

This class provides count object with 1 score in float format.

Count1f() - Constructor for class gov.nih.nlm.nls.tc.Lib.Count1f

Create a Count1f object (default).

Count1f(String) - Constructor for class gov.nih.nlm.nls.tc.Lib.Count1f

Create a Count1f object by specifying the score.

Count1f(float) - Constructor for class gov.nih.nlm.nls.tc.Lib.Count1f

Create a Count1f object by specifying the score.

Count1f(String, float) - Constructor for class gov.nih.nlm.nls.tc.Lib.Count1f

Create a Count1f object by specifying the name and score.

Count1fComparator<T> - Class in gov.nih.nlm.nls.tc.Lib

This class provides methods to compare Count1f records.

Count1fComparator() - Constructor for class gov.nih.nlm.nls.tc.Lib.Count1fComparator

Count1fJdComparator<T> - Class in gov.nih.nlm.nls.tc.Jdi

This class provides methods to compare Jd Score records (Count1f).

Count1fJdComparator() - Constructor for class gov.nih.nlm.nls.tc.Jdi.Count1fJdComparator

Count1fOperator - Class in gov.nih.nlm.nls.tc.Lib

This class provides Count1f St Score Vector operation

Count1fOperator() - Constructor for class gov.nih.nlm.nls.tc.Lib.Count1fOperator

Create the Count1f ST operator object.

Count1fStComparator<T> - Class in gov.nih.nlm.nls.tc.Stri

This class provides methods to compare St Score records (Count1f).

Count1fStComparator() - Constructor for class gov.nih.nlm.nls.tc.Stri.Count1fStComparator

Count2f - Class in gov.nih.nlm.nls.tc.Lib

This class provides count object with 2 scores in float format.

Count2f() - Constructor for class gov.nih.nlm.nls.tc.Lib.Count2f

Create a Count2f object (default).

Count2f(String) - Constructor for class gov.nih.nlm.nls.tc.Lib.Count2f

Create a Count2f object by specifying the name.

Count2f(float, float) - Constructor for class gov.nih.nlm.nls.tc.Lib.Count2f

Create a Count2f object by specifying two scores.

Count2f(String, float, float) - Constructor for class gov.nih.nlm.nls.tc.Lib.Count2f

Create a Count2f object by specifying the name and two scores.

Count2fComparator<T> - Class in gov.nih.nlm.nls.tc.Lib

This class provides methods to compare Count2f records.

Count2fComparator() - Constructor for class gov.nih.nlm.nls.tc.Lib.Count2fComparator

Count2fJdComparator<T> - Class in gov.nih.nlm.nls.tc.Jdi

This class provides methods to compare Jd Score records (Count2f).

Count2fJdComparator() - Constructor for class gov.nih.nlm.nls.tc.Jdi.Count2fJdComparator

Count2fOperator - Class in gov.nih.nlm.nls.tc.Lib

This class provides Count2f Scores Vector operations

Count2fOperator() - Constructor for class gov.nih.nlm.nls.tc.Lib.Count2fOperator

Create the Count2f operator object.

Count2fStComparator<T> - Class in gov.nih.nlm.nls.tc.Sti

This class provides methods to compare St Score records (Count2f).

Count2fStComparator() - Constructor for class gov.nih.nlm.nls.tc.Sti.Count2fStComparator

Countf - Class in gov.nih.nlm.nls.tc.Lib

This class provides count object with scores in float format.

Countf() - Constructor for class gov.nih.nlm.nls.tc.Lib.Countf

Create a Countf object (default).

Countf(String) - Constructor for class gov.nih.nlm.nls.tc.Lib.Countf

Create a Count2f object by specifying the name.

CreateDb - Class in gov.nih.nlm.nls.tc.LoadDb

This class is used to create database from a specified configuration file.

CreateDb() - Constructor for class gov.nih.nlm.nls.tc.LoadDb.CreateDb