TC Java
2011 Version
A B C D E F G I J K L M N O P Q R S T V W

S

SemanticType - Class in gov.nih.nlm.nls.tc.Sti
This class is the Semantic Type Java object
SemanticType() - Constructor for class gov.nih.nlm.nls.tc.Sti.SemanticType
Create a Semantic Type object (defualt).
SemanticType(String, String) - Constructor for class gov.nih.nlm.nls.tc.Sti.SemanticType
Create a Semantic Type object by specifying TUI and ST name.
SemanticType(int, String, String) - Constructor for class gov.nih.nlm.nls.tc.Sti.SemanticType
Create a Semantic Type object by specifying index, TUI, and ST name.
SemanticType(int, String, String, String) - Constructor for class gov.nih.nlm.nls.tc.Sti.SemanticType
Create a Semantic Type object by specifying index, tui, ST abbreviation, and ST name.
SemanticTypeComparator<T> - Class in gov.nih.nlm.nls.tc.Sti
This class provides methods to compare Semantic Type.
SemanticTypeComparator() - Constructor for class gov.nih.nlm.nls.tc.Sti.SemanticTypeComparator
 
SemanticTypes - Class in gov.nih.nlm.nls.tc.Sti
This class is to load Semantic Types from a flat file.
SemanticTypes(String) - Constructor for class gov.nih.nlm.nls.tc.Sti.SemanticTypes
Create the Semantic Types list object by specifying the input file.
SemanticTypes(String, boolean) - Constructor for class gov.nih.nlm.nls.tc.Sti.SemanticTypes
Create the Semantic Types list object by specifying the input file and flag of verbose.
SentenceTokenizer - Class in gov.nih.nlm.nls.tc.FilterApi
This class provides methods to tokenize sentence.
SentenceTokenizer() - Constructor for class gov.nih.nlm.nls.tc.FilterApi.SentenceTokenizer
 
SetAbbr(String) - Method in class gov.nih.nlm.nls.tc.Sti.SemanticType
Set the ST abbreviation
SetAbbreviation(String) - Method in class gov.nih.nlm.nls.tc.Jdi.Subheading
Set MeSH subheading abbreviation
SetCandidates(Vector<String>) - Method in class gov.nih.nlm.nls.tc.FilterApi.OutputFilterOption
Set the candidate for display
SetClusterInc(float) - Method in class gov.nih.nlm.nls.tc.FilterApi.OutputFilterOption
Set the value of the increment of cluster
SetClusterNum(int) - Method in class gov.nih.nlm.nls.tc.FilterApi.OutputFilterOption
Set the value of the number of cluster
SetCompareField(String) - Method in class gov.nih.nlm.nls.tc.MedLine.CitationComparator
Set the comparing flag
SetCompareFlag(int) - Method in class gov.nih.nlm.nls.tc.Jdi.Count1fJdComparator
Set the comparing flag
SetCompareFlag(int) - Method in class gov.nih.nlm.nls.tc.Jdi.Count2fJdComparator
Set the comparing flag
SetCompareFlag(int) - Method in class gov.nih.nlm.nls.tc.Lib.Count1fComparator
Set the comparing flag
SetCompareFlag(int) - Method in class gov.nih.nlm.nls.tc.Lib.Count2fComparator
Set the comparing flag
SetCompareFlag(int) - Method in class gov.nih.nlm.nls.tc.Sti.Count2fStComparator
Set the comparing flag
SetCompareFlag(int) - Method in class gov.nih.nlm.nls.tc.Sti.SemanticTypeComparator
Set the comparing flag
SetCompareFlag(int) - Method in class gov.nih.nlm.nls.tc.Stri.Count1fStComparator
Set the comparing flag
SetCompareLengthFlag(boolean) - Method in class gov.nih.nlm.nls.tc.MedLine.CitationComparator
Set the flag of copareing length
SetCount1(float) - Method in class gov.nih.nlm.nls.tc.Lib.Count1f
Set the score of the Count1f object.
SetCount1(float) - Method in class gov.nih.nlm.nls.tc.Lib.Count2f
Set the count1 of the Count2f object.
SetCount2(float) - Method in class gov.nih.nlm.nls.tc.Lib.Count2f
Set the count2 of the Count2f object.
SetDc(int) - Method in class gov.nih.nlm.nls.tc.Jdi.WordSignalWcDc
Set document count
SetFieldSeparator(String) - Static method in class gov.nih.nlm.nls.tc.Util.GlobalVars
Set field separator
SetFullName(String) - Method in class gov.nih.nlm.nls.tc.Jdi.Subheading
Set MeSH subheading abbreviation
SetId(String) - Method in class gov.nih.nlm.nls.tc.Sti.SemanticType
Set the ST id
SetIndex(int) - Method in class gov.nih.nlm.nls.tc.Jdi.JournalDescriptor
Set the JD index
SetIndex(int) - Method in class gov.nih.nlm.nls.tc.Sti.SemanticType
Set the ST index
SetJdid(String) - Method in class gov.nih.nlm.nls.tc.Jdi.JournalDescriptor
Set the JD id
SetJds(Vector<String>) - Method in class gov.nih.nlm.nls.tc.Jdi.JidTaJd
Set journal descriptors.
SetJdScores(Vector<Count2f>) - Method in class gov.nih.nlm.nls.tc.Stri.StJd
Set the Jd scores
SetJid(String) - Method in class gov.nih.nlm.nls.tc.Jdi.JidTaJd
Set journal id.
SetJid(String) - Method in class gov.nih.nlm.nls.tc.MedLine.MltObj
Set Journal id of the tokenized MEDLINE citation
SetJournalDescriptors(JournalDescriptors) - Method in class gov.nih.nlm.nls.tc.Jdi.Count1fJdComparator
Set the Journal Descriptors
SetJournalDescriptors(JournalDescriptors) - Method in class gov.nih.nlm.nls.tc.Jdi.Count2fJdComparator
Set the Journal Descriptors
SetKey(K) - Method in class gov.nih.nlm.nls.tc.Lib.KeyValueObj
Set key to a key-value object.
SetLegalWordsOption(LegalWordsOption) - Method in class gov.nih.nlm.nls.tc.FilterApi.InputFilterOption
Set options of legal words
SetMaxSignal(int) - Method in class gov.nih.nlm.nls.tc.FilterApi.LegalWordsOption
Set value of max.
SetMaxSignal(String) - Method in class gov.nih.nlm.nls.tc.FilterApi.LegalWordsOption
 
SetMinDc(int) - Method in class gov.nih.nlm.nls.tc.FilterApi.LegalWordsOption
Set value of min.
SetMinLength(int) - Method in class gov.nih.nlm.nls.tc.FilterApi.LegalWordsOption
Set value of min.
SetMinSignal(int) - Method in class gov.nih.nlm.nls.tc.FilterApi.LegalWordsOption
Set value of min.
SetMinWc(int) - Method in class gov.nih.nlm.nls.tc.FilterApi.LegalWordsOption
Set value of min.
SetName(String) - Method in class gov.nih.nlm.nls.tc.Jdi.JournalDescriptor
Set the JD name
SetName(String) - Method in class gov.nih.nlm.nls.tc.Lib.Countf
Set the name of the Count1f object.
SetName(String) - Method in class gov.nih.nlm.nls.tc.Sti.SemanticType
Set the ST name
SetNoOutputMsg(String) - Method in class gov.nih.nlm.nls.tc.FilterApi.OutputFilterOption
Set the message for no output.
SetOutputFieldList(Vector<Integer>) - Method in class gov.nih.nlm.nls.tc.FilterApi.OutputFilterOption
Set the output fields list
SetOutputNum(int) - Method in class gov.nih.nlm.nls.tc.FilterApi.OutputFilterOption
Set the number of output result to display.
SetPmid(String) - Method in class gov.nih.nlm.nls.tc.MedLine.MltObj
Set pmid of the tokenized MEDLINE citation
SetPropertiesInConfig(String) - Method in class gov.nih.nlm.nls.tc.Lib.TcSystemOption
 
SetRemoveStopWord(boolean) - Method in class gov.nih.nlm.nls.tc.FilterApi.LegalWordsOption
Set flag of removing stopwords
SetResultType(int) - Method in class gov.nih.nlm.nls.tc.FilterApi.OutputFilterOption
Set the value of type for the overall result pick.
SetRoundOffDecimals(int) - Method in class gov.nih.nlm.nls.tc.FilterApi.OutputFilterOption
Set the decimals to round off
SetScoreMultiplyFactor(int) - Method in class gov.nih.nlm.nls.tc.FilterApi.OutputFilterOption
Set the value of score multiply factor.
SetSemanticTypes(SemanticTypes) - Method in class gov.nih.nlm.nls.tc.Sti.Count2fStComparator
Set the Semantic Types
SetSemanticTypes(SemanticTypes) - Method in class gov.nih.nlm.nls.tc.Stri.Count1fStComparator
Set the Semantic Types
SetShortName(String) - Method in class gov.nih.nlm.nls.tc.Jdi.Subheading
Set MeSH subheading abbreviation
SetShowResult(int) - Method in class gov.nih.nlm.nls.tc.FilterApi.OutputFilterOption
Set the value of type for the shown result.
SetSignal(double) - Method in class gov.nih.nlm.nls.tc.Jdi.WordSignalWcDc
Set normalized signal
SetStatus(String) - Method in class gov.nih.nlm.nls.tc.Jdi.JournalDescriptor
Set the JD status
SetTa(String) - Method in class gov.nih.nlm.nls.tc.Jdi.JidTaJd
Set journal title.
SetTokenizedText(String) - Method in class gov.nih.nlm.nls.tc.MedLine.MltObj
Set tokenized text of the tokenized MEDLINE citation
SetTui(String) - Method in class gov.nih.nlm.nls.tc.Stri.StJd
Set the St index
SetUseAcronymFilter(boolean) - Method in class gov.nih.nlm.nls.tc.FilterApi.InputFilterOption
Set flag of using acronym filter
SetUseCluster(boolean) - Method in class gov.nih.nlm.nls.tc.FilterApi.OutputFilterOption
Set the boolean flag to display results in cluster.
SetUseDebugMsg(boolean) - Method in class gov.nih.nlm.nls.tc.FilterApi.InputFilterOption
Set flag of using Debug Message
SetUseLegalWordsMsg(boolean) - Method in class gov.nih.nlm.nls.tc.FilterApi.InputFilterOption
Set flag of using legal wrods in debug Message
SetUseMaxSignal(boolean) - Method in class gov.nih.nlm.nls.tc.FilterApi.LegalWordsOption
Set flag of using max.
SetUseMinDc(boolean) - Method in class gov.nih.nlm.nls.tc.FilterApi.LegalWordsOption
Set flag of using min.
SetUseMinLength(boolean) - Method in class gov.nih.nlm.nls.tc.FilterApi.LegalWordsOption
Set flag of using min.
SetUseMinSignal(boolean) - Method in class gov.nih.nlm.nls.tc.FilterApi.LegalWordsOption
Set flag of using min.
SetUseMinWc(boolean) - Method in class gov.nih.nlm.nls.tc.FilterApi.LegalWordsOption
Set flag of using min.
SetUseNoOutputMsg(boolean) - Method in class gov.nih.nlm.nls.tc.FilterApi.OutputFilterOption
Set the boolean flag to show no output message.
SetUseRestrictWord(boolean) - Method in class gov.nih.nlm.nls.tc.FilterApi.LegalWordsOption
Set flag of using restrictwords only
SetUseUniqueWord(boolean) - Method in class gov.nih.nlm.nls.tc.FilterApi.InputFilterOption
Set flag of using word extraction filter
SetUseWordExtractionFilter(boolean) - Method in class gov.nih.nlm.nls.tc.FilterApi.InputFilterOption
Set flag of using word extraction filter
SetValue(V) - Method in class gov.nih.nlm.nls.tc.Lib.KeyValueObj
Set value to a key-value object.
SetVerbose(boolean) - Method in class gov.nih.nlm.nls.tc.Jdi.Count2fJdComparator
Set verbose flag for reading in JD file
SetVerbose(boolean) - Method in class gov.nih.nlm.nls.tc.MedLine.CitationObjs
Set verbose flag for message.
SetVerbose(boolean) - Method in class gov.nih.nlm.nls.tc.Sti.Count2fStComparator
Set verbose flag for reading in ST file
SetVerbose(boolean) - Method in class gov.nih.nlm.nls.tc.Sti.SemanticTypeComparator
Set verbose flag for reading in ST file
SetVerbose(boolean) - Method in class gov.nih.nlm.nls.tc.Stri.Count1fStComparator
Set verbose flag for reading in ST file
SetWc(int) - Method in class gov.nih.nlm.nls.tc.Jdi.WordSignalWcDc
Set word count
SetWord(String) - Method in class gov.nih.nlm.nls.tc.Jdi.WordSignalWcDc
Set word
ShowJds(BufferedWriter, boolean) - Method in class gov.nih.nlm.nls.tc.Jdi.JournalDescriptors
Show index, id, and name of all Journal descriptors.
ShowSts(BufferedWriter, boolean) - Method in class gov.nih.nlm.nls.tc.Sti.SemanticTypes
Show index, abbreviation, and full name of all Semantic Types.
shs_ - Variable in class gov.nih.nlm.nls.tc.Api.JdiApi
 
SimilarityApi - Class in gov.nih.nlm.nls.tc.Api
This class provides APIs for calculate similarity value for JD vectors and ST vectors.
SimilarityApi() - Constructor for class gov.nih.nlm.nls.tc.Api.SimilarityApi
Creates an SimilarityApi object.
ST_FILE - Static variable in class gov.nih.nlm.nls.tc.Lib.Configuration
key for the path of STs file defined in conf file
ST_JD_FILE - Static variable in class gov.nih.nlm.nls.tc.Lib.Configuration
key for the path of ST-JD file defined in conf file
Standardize(Vector<Count1f>, SemanticTypes) - Static method in class gov.nih.nlm.nls.tc.Lib.Count1fOperator
Standardize the order of ST scores.
Standardize(Vector<Count1f>, JournalDescriptors) - Static method in class gov.nih.nlm.nls.tc.Lib.Count1fOperator
Standardize the Count1f Vector by rearrnging the vector in index order and fill 0 in empty elements.
Standardize(Vector<Count2f>, SemanticTypes) - Static method in class gov.nih.nlm.nls.tc.Lib.Count2fOperator
Standardize the order of ST scores.
Standardize(Vector<Count2f>, JournalDescriptors) - Static method in class gov.nih.nlm.nls.tc.Lib.Count2fOperator
Standardize the Count2f Vector by rearrnging the vector in index order and fill 0 in empty elements.
Sti - Class in gov.nih.nlm.nls.tc.Tools
This class provides St index tool
Sti() - Constructor for class gov.nih.nlm.nls.tc.Tools.Sti
Create a STI tool object (default).
Sti(String) - Constructor for class gov.nih.nlm.nls.tc.Tools.Sti
Create a STI tool object by specifying option string.
StiApi - Class in gov.nih.nlm.nls.tc.Api
This class provides Semantic Type Indexing API.
StiApi(Configuration) - Constructor for class gov.nih.nlm.nls.tc.Api.StiApi
Creates an StiApi object and initiate related data, using a specified configuration object.
StiApi(String) - Constructor for class gov.nih.nlm.nls.tc.Api.StiApi
Creates an StiApi object and initiate related data, using a specified configuration file.
StiApi(Connection) - Constructor for class gov.nih.nlm.nls.tc.Api.StiApi
Creates an StiApi object and initiate related data, using a specified database connection object.
StiApi(Hashtable<String, String>) - Constructor for class gov.nih.nlm.nls.tc.Api.StiApi
Creates an StiApi object and initiate related data, using a specified properties to be overwritten in configuration.
StiApi(Configuration, SemanticTypes) - Constructor for class gov.nih.nlm.nls.tc.Api.StiApi
Creates an StiApi object and initiate related data, using a specified configuration object and semantic types object.
StiApi(Connection, SemanticTypes) - Constructor for class gov.nih.nlm.nls.tc.Api.StiApi
Creates an StiApi object and initiate related data, using a specified database connection object and semantic types object.
StiHelp - Class in gov.nih.nlm.nls.tc.Tools
This class is to print out ST index help menu.
StiHelp() - Constructor for class gov.nih.nlm.nls.tc.Tools.StiHelp
 
StiHelp(BufferedWriter, boolean) - Static method in class gov.nih.nlm.nls.tc.Tools.StiHelp
Print out Sti system help menu.
StJd - Class in gov.nih.nlm.nls.tc.Stri
This class provides St-Jd score object
StJd() - Constructor for class gov.nih.nlm.nls.tc.Stri.StJd
Create a St-Jd score (Count2f) object (defualt).
StJdComparator<T> - Class in gov.nih.nlm.nls.tc.Stri
This class provides methods to compare StJd object.
StJdComparator() - Constructor for class gov.nih.nlm.nls.tc.Stri.StJdComparator
 
StJds - Class in gov.nih.nlm.nls.tc.Stri
This class provides St-Jd scores Objects from a flat file
StJds(String) - Constructor for class gov.nih.nlm.nls.tc.Stri.StJds
Create the St-Jd scores (Count2f) objects (default).
StJds(String, boolean) - Constructor for class gov.nih.nlm.nls.tc.Stri.StJds
Create the St-Jd scores (Count2f) objects by specifying the StJd file and flag of verbose.
StJds(Configuration, boolean) - Constructor for class gov.nih.nlm.nls.tc.Stri.StJds
Create the St-Jd scores (Count2f) objects by specifying the configuration object and flag of verbose.
StJds(SemanticTypes, JournalDescriptors, String, boolean) - Constructor for class gov.nih.nlm.nls.tc.Stri.StJds
Create the St-Jd scores (Count2f) objects by specifying the semantic types list object, journal descriptors list object, and flag of verbose.
STOP_WORDS_FILE - Static variable in class gov.nih.nlm.nls.tc.Lib.Configuration
key for the path of stopwords file defined in conf file
Str - Class in gov.nih.nlm.nls.tc.Util
This class provides methods of string related operations.
Str() - Constructor for class gov.nih.nlm.nls.tc.Util.Str
 
Stri - Class in gov.nih.nlm.nls.tc.Tools
This class provides ST real-time index tool
Stri() - Constructor for class gov.nih.nlm.nls.tc.Tools.Stri
Create a STRI tool object (default).
Stri(String) - Constructor for class gov.nih.nlm.nls.tc.Tools.Stri
Create a STRI tool object by specifying option string.
StriApi - Class in gov.nih.nlm.nls.tc.Api
This class provides Semantic Type Realtime Indexing API.
StriApi(Configuration) - Constructor for class gov.nih.nlm.nls.tc.Api.StriApi
Creates an StriApi object and initiate related data, using a specified configuration object.
StriApi(String) - Constructor for class gov.nih.nlm.nls.tc.Api.StriApi
Creates an StriApi object and initiate related data, using a specified configuration file.
StriApi(Connection) - Constructor for class gov.nih.nlm.nls.tc.Api.StriApi
Creates an StriApi object and initiate related data, using a specified database connection object.
StriApi(Hashtable<String, String>) - Constructor for class gov.nih.nlm.nls.tc.Api.StriApi
Creates an StriApi object and initiate related data, using a specified properties to be overwritten in configuration.
StriApi(Configuration, JournalDescriptors, Subheadings) - Constructor for class gov.nih.nlm.nls.tc.Api.StriApi
Creates an StriApi object and initiate related data, using a specified configuration object, journal descritor object, and subHeadings object.
StriApi(Configuration, JournalDescriptors, Subheadings, SemanticTypes) - Constructor for class gov.nih.nlm.nls.tc.Api.StriApi
Creates an StriApi object and initiate related data, using a specified configuration object, journal descritor object, subHeadings object, and semantic types object.
StriApi(Connection, JournalDescriptors, Subheadings) - Constructor for class gov.nih.nlm.nls.tc.Api.StriApi
Creates an StriApi object and initiate related data, using a specified db connection object, journal descritor object, and subHeadings object.
StriHelp - Class in gov.nih.nlm.nls.tc.Tools
This class is to print out ST real-time index help menu.
StriHelp() - Constructor for class gov.nih.nlm.nls.tc.Tools.StriHelp
 
StriHelp(BufferedWriter, boolean) - Static method in class gov.nih.nlm.nls.tc.Tools.StriHelp
Print out LexAccess system help menu.
sts_ - Variable in class gov.nih.nlm.nls.tc.Api.StiApi
 
sts_ - Variable in class gov.nih.nlm.nls.tc.Api.StWsdApi
 
StWsd - Class in gov.nih.nlm.nls.tc.Tools
This class provides St-Wsd tool
StWsd() - Constructor for class gov.nih.nlm.nls.tc.Tools.StWsd
Create a STI tool object (default).
StWsd(String) - Constructor for class gov.nih.nlm.nls.tc.Tools.StWsd
Create a STI tool object by specifying option string.
StWsdApi - Class in gov.nih.nlm.nls.tc.Api
This class provides Word Sense Disambiguation Tool API using STI.
StWsdApi(Configuration) - Constructor for class gov.nih.nlm.nls.tc.Api.StWsdApi
Creates an WsdApi object and initiate related data, using a specified configuration object.
StWsdApi(String) - Constructor for class gov.nih.nlm.nls.tc.Api.StWsdApi
Creates an WsdApi object and initiate related data, using a specified configuration file.
StWsdApi(Connection) - Constructor for class gov.nih.nlm.nls.tc.Api.StWsdApi
Creates an WsdApi object and initiate related data, using a specified database connection object.
StWsdApi(Hashtable<String, String>) - Constructor for class gov.nih.nlm.nls.tc.Api.StWsdApi
Creates an WsdApi object and initiate related data, using a specified properties to be overwritten in configuration.
StWsdApi(Configuration, SemanticTypes, JournalDescriptors) - Constructor for class gov.nih.nlm.nls.tc.Api.StWsdApi
Creates an WsdApi object and initiate related data, using a specified configuration object and semantic types object.
StWsdApi(Connection, SemanticTypes, JournalDescriptors) - Constructor for class gov.nih.nlm.nls.tc.Api.StWsdApi
Creates an WsdApi object and initiate related data, using a specified database connection object and semantic types object.
StWsdHelp - Class in gov.nih.nlm.nls.tc.Tools
This class is to print out ST-WSD Tool help menu.
StWsdHelp() - Constructor for class gov.nih.nlm.nls.tc.Tools.StWsdHelp
 
StWsdHelp(BufferedWriter, boolean) - Static method in class gov.nih.nlm.nls.tc.Tools.StWsdHelp
Print out StWsd system help menu.
SUB_HEADINGS_FILE - Static variable in class gov.nih.nlm.nls.tc.Lib.Configuration
key for the path of Subheadings file defined in conf file
Subheading - Class in gov.nih.nlm.nls.tc.Jdi
This class is the Subheading Java object
Subheading() - Constructor for class gov.nih.nlm.nls.tc.Jdi.Subheading
Create a MeSH subheading object (default).
Subheading(String, String, String) - Constructor for class gov.nih.nlm.nls.tc.Jdi.Subheading
Create a MeSH subheading object by specifying abbreviation, short name, and full name.
Subheadings - Class in gov.nih.nlm.nls.tc.Jdi
This class is to load MeSH Subheadings from a flat file.
Subheadings(String) - Constructor for class gov.nih.nlm.nls.tc.Jdi.Subheadings
Create the MeSH Subheadings List object by specifying the input file.
Subheadings(String, boolean) - Constructor for class gov.nih.nlm.nls.tc.Jdi.Subheadings
Create the MeSH Subheadings List object by specifying the input file and flag of verbose.

TC Java
2011 Version
A B C D E F G I J K L M N O P Q R S T V W
Submit a bug or feature

Copyright © 2011 National Library of Medicine