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  • Yu Z, Nguyen T, Dhombres F, Johnson T, Bodenreider O. "Hybrid Topics" - Facilitating the Interpretation of Topics Through the Addition of MeSH Descriptors to Bags of Words. Stud Health Technol Inform. 2017;245:662-666.
  • Jimeno-Yepes A, Wilkowski B, Mork J, van Lenten E, Demner-Fushman D, Aronson AR. A bottom-up approach to MEDLINE indexing recommendations. AMIA Annu Symp Proc. 2011;2011:1583-92. Epub 2011 Oct 22.
  • Kilicoglu H, Rosemblat G, Cairelli M, Rindflesch TC. A Compositional Interpretation of Biomedical Event Factuality. Proc of the Second Workshop on Extra-Propositional Aspects of Meaning in Computational Semantics (ExProM 2015).
  • Bakker TA, Ryce AN, Logan RA, Tse T, Hutcherson LY. A Consumer Health Informatics (CHI) Toolbox: Challenges and Implications AMIA Annu Symp Proc. 2005:21-5
  • Sharp M, Bodenreider O, Wacholder N. A Framework for Characterizing Drug Information Sources AMIA Annu Symp Proc. 2008 Nov 6:662-6
  • Bodenreider O, Burgun A. A framework for comparing phenotype annotations of orthologous genes. Stud Health Technol Inform. 2010;160(Pt 2):1309-13.
  • Chachra S, Ben Abacha A, Shooshan SE, Rodriguez L, Demner-Fushman D. A Hybrid Approach to Generation of Missing Abstracts in Biomedical Literature. Proceedings of COLING 2016, the 26th International Conference on Computational Linguistics: Technical Papers: 1093-1100.
  • Kilicoglu H, Rogers W. A Hybrid System for Extracting Chemical-Disease Relationships from Scientific Literature. 2015. BioCreative 5 Proceedings.
  • Fiszman M, Shin D, Sneiderman CA, Jin H, Rindflesch TC. A Knowledge Intensive Approach to Mapping Clinical Narrative to LOINC. AMIA Annu Symp Proc. 2010 Nov 13;2010:227-31.
  • Workman TE, Rosemblat G, Fiszman M, Rindflesch TC. A literature-based assessment of concept pairs as a measure of semantic relatedness. AMIA Annu Symp Proc. 2013 Nov 16;2013:1512-21. eCollection 2013.
  • Rodgers RPC, Sherwin Z. A Management System for Network Sharable Locally Installed Software: Merging RPM and the Depot Scheme under Solaris LISA XV: Proceedings of the Fifteenth Systems Administration Conference. 2001 Dec;: 267-272.
  • Lu C, Humphrey SM, Browne AC. A method for verifying a vector-based text classification system AMIA Annu Symp Proc. 2008 Nov 6:1030.
  • Bashyam V, Divita G, Bennett DB, Browne AC, Taira RK. A normalized lexical lookup approach to identifying UMLS concepts in free text. Stud Health Technol Inform. 2007;129(Pt 1):545-9.
  • Rosemblat G, Graham L. A Pragmatic Approach to Summary Extraction in Clinical Trials Proc HLT-NAACL 06, pages 124-125, New York City, June 2006
  • Bodenreider O, Coban ZH, Doganay MC, Erdem E, Kosucu H. A preliminary report on answering complex queries related to drug discovery using answer set programming. Proceedings of the 3rd International Workshop on Applications of Logic Programming to the (Semantic) Web and Web Services (ALPSWS2008), 2008: p. 85-90 (electronic proceedings: http://ceur-ws.org/Vol-434/).
  • Osborne R, Aronson A, Cohen K. A repository of semantic types in the MIMIC II database clinical notes. BioNLP 2014. pp. 93-97.
  • Bodenreider O. A Semantic Navigation Tool for the UMLS AMIA Annu Symp Proc. 2000;: 971.
  • Nelson SJ, Brown SH, Erlbaum MS, Olson N, Powell T, Carlsen B, Carter J, Tuttle MS, Hole WT. A semantic normal form for clinical drugs in the UMLS: early experiences with the VANDF. Proc AMIA Symp. 2002:557-61.
  • Abhyankar S, Demner-Fushman D. A simple method to extract key maternal data from neonatal clinical notes. AMIA Annu Symp Proc. 2013 Nov 16;2013:2-9. eCollection 2013.
  • Leroy G, Rindflesch TC, Libbus B, Kilicoglu H, Chen H. A Syntactic Parser with Semantic Filtering for Biomedical Text. Proceedings of Pacific Symposium on Biocomputing.
  • Zeng Q, Kin E, Crowell J, Tse T. A Text Corpora-Based Estimation of the Familiarity of Health Terminology ISBMD, Aveiro, Portugal, 10-11 November 2005:184-92.
  • Crowell J, Zeng QT, Tse T. A Web Application to Support Consumer Health Vocabulary Development AMIA Annu Symp Proc. 2005:932
  • Hole WT, Carlsen BA, Tuttle MS, Srinivasan S, Lipow SS, Olson NE, Sheretz DD, Humphreys BL. Achieving "source transparency" in the UMLS Metathesaurus. Stud Health Technol Inform. 2004;107(Pt 1):371-5.
  • Fung K, Xue Z, Ameye F, Gutierrez AR, D'Have A. Achieving Logical Equivalence between SNOMED CT and ICD-10-PCS Surgical Procedures. AMIA Annu Symp Proc. 2018 Apr 16;2017:724-733. eCollection 2017.
  • Rosemblat G, Tse T, Gemoets D. Adapting A Monolingual Consumer Health System for Cross-Language Information Retrieval Advances in Knowledge Organization, Proceedings of the Eighth International ISKO Conference. 2004 July;9:315-321.
  • Xiaocheng L, Prettyman M, Antonucci R. Agent-based system expansion and integration in HSTAT. Proceedings of the Fourth World Multiconference on Systemics, Cybernetics, and Informatics (SCI2000). July 2000.
  • Winnenburg R, Rodriguez L, Callaghan F, Sorbello A, Szarfman A, Bodenreider O. Aligning Pharmacologic Classes Between MeSH and ATC. 4th International Conference on Biomedical Ontology · ICBO 2013
  • Zhang S, Bodenreider O. Aligning Representations of Anatomy Using Lexical and Structural Methods AMIA Annu Symp Proc. 2003 Nov;:753-757.
  • Mrabet Y, Vougiouklis P, Kilicoglu H, Gardent C, Demner-Fushman D, Hare J, Simperl E. Aligning Texts and Knowledge Bases with Semantic Sentence Simplification. WebNLG 2016.
  • Zhang S, Bodenreider O. Alignment of Multiple Ontologies of Anatomy: Deriving Indirect Mappings from Direct Mappings to a Reference AMIA Annu Symp Proc 2005:864-868
  • Peters L, Kapusnik-Uner JE, Nguyen T, Bodenreider O. An approximate matching method for clinical drug names. AMIA Annu Symp Proc. 2011;2011:1117-26. Epub 2011 Oct 22.
  • Kilicoglu H, Fiszman M, Roberts K, Demner-Fushman D. An Ensemble Method for Spelling Correction in Consumer Health Questions. AMIA Annu Symp Proc. 2015 Nov 5;2015:727-36. eCollection 2015.
  • Lynch P, Luan X, Prettyman M, Mericle L, Borkmann E, Schlaifer J. An evaluation of new and old similarity ranking algorithms. Proceedings of the International Conference on Information Technology: Coding and Computing (ITCC’04). 2004;2:148.
  • Sahoo S, Bodenreider O, Zeng K, Sheth AP. An Experiment in Integrationg Large Biomedical Knowledge Resources with RDF: Application to Associating Genotype and Phenotype Information Proc Workshop on Health Care and Life Sciences Data Integration for the Semantic Web at WWW2007 (electronic proceedings: http://www2007.org/workshops/paper_149.pdf)
  • Resnick MP, Ripple AM, Auston I, Rindflesch TC. An Ontology for Public Health to Support Enhanced Information Retrieval AMIA Annu Symp Proc. 2010
  • Bergun A, Bodenreider O. An ontology of chemical entities helps identify dependence relations among Gene Ontology terms Proc SMBM-2005
  • Callaghan F, Jackson MT, Demner-Fushman D, Abhyankar S, McDonald C. Analysis of data that has been extracted from free-text using natural language processing: a likelihood model for misclassification with an application to medical informatics. International Conference on Advances in Interdisciplinary Statistics and Combinatorics (AISC2012), Greensboro, NC, October 2012
  • Kury F, Baik SH, McDonald CJ. Analysis of Healthcare Cost and Utilization in the First Two Years of the Medicare Shared Savings Program Using Big Data from the CMS Enclave. AMIA Annu Symp Proc. 2017 Feb 10;2016:724-733. eCollection 2016.
  • Bodenreider O, Rodriguez L. Analyzing U.S. prescription lists with RxNorm and the ATC/DDD Index. AMIA Annu Symp Proc. 2014 Nov 14;2014:297-306. eCollection 2014.
  • Kilicoglu H, Ben Abacha A, Mrabet Y, Roberts K, Rodriguez L, Shooshan SE, Demner-Fushman D. Annotating named entities in consumer health questions. LREC,23-28 May 2016, Portorož.
  • Roberts K, Masterton K, Kilicoglu H, Fiszman M, Demner-Fushman D. Annotating Question Decomposition on Complex Medical Questions. LREC 2014.
  • Roberts K, Masterton K, Fiszman M, Kilicoglu H, Demner-Fushman D. Annotating Question Types for Consumer Health Questions. LREC 2014, BioTxtM workshop.
  • Demner-Fushman D, Shooshan SE, Rodriguez L, Antani SK, Thoma GR. Annotation of Chest Radiology Reports for Indexing and Retrieval. Multimodal Retrieval in the Medical Domain 2015 (MRMD 2015), Vienna, Austria, March 29, 2015
  • Bodenreider O. API: NDF-RT
  • Bodenreider O. API: Prescribable
  • Fung KW. API: RxTerms
  • Aronson AR. API: Semantic Knowledge Representation
  • Peters LB, Bodenreider O. Approaches to Supporting the Analysis of Historical Medication Datasets with RxNorm. AMIA Annu Symp Proc. 2015 Nov 5;2015:1034-41. eCollection 2015.
  • Rindflesch TC, Bean CA, Sneiderman CA. Argument Identification for Arterial Branching Predications Asserted in Cardiac Catheterization Reports Proc AMIA Symp. 2000:704-8.
  • Ruch P, Tbahriti I, Bobeill J, Aronson AR. Argumentative Feedback: A Linguistically-motivated Term Expansion for Information Retrieval Proc COLING/ACL 2006, 675-82
  • Kilicoglu H, Fiszman M, Rosemblat G, Marimpietri S, Rindflesch TC. Arguments of Nominals in Semantic Interpretation of Biomedical Text BioNLM Workshop Proc, Assoc. for Computational Linguistics 2010
  • Wang Y, Wei D, Xu J, Elhanan G, Perl Y, Halper M, Chen Y, Spackman KA, Hripcsak G. Auditing complex concepts in overlapping subsets of SNOMED. AMIA Annu Symp Proc. November 2008:273-7.
  • Mougin F, Bodenreider O. Auditing the NCI Thesaurus with Semantic Web Technologies AMIA Annu Symp Proc. 2008 Nov 6:500-4
  • Jimeno-Yepes A, Mork J, Demner-Fushman D, Aronson AR. Automatic algorithm selection for MeSH Heading indexing based on meta-learning. International Symposium on Languages in Biology and Medicine, Singapore, December, 2011.
  • Bangalore AK, Divita G, Humphrey SM, Browne AC, Thorn KE. Automatic Categorization of Google Search Results for Medical Queries using JDI Medinfo 2007: Proc. of the 11th World Congress on Health (Medical) Informatics
  • Rodriguez LM, Fushman DD. Automatic Classification of Structured Product Labels for Pregnancy Risk Drug Categories, a Machine Learning Approach. AMIA Annu Symp Proc. 2015 Nov 5;2015:1093-102. eCollection 2015.
  • Bodenreider O, Mougin F, Burgun A. Automatic Determination of Anti-coagulation Status with NDF-RT Proceedings of the 13th ISMB'2010 SIG meeting Bio-ontologies 2010:140-143
  • Roberts K, Rodriguez L, Shooshan SE, Demner-Fushman D. Automatic Extraction and Post-coordination of Spatial Relations in Consumer Language. AMIA Annu Symp Proc. 2015 Nov 5;2015:1083-92. eCollection 2015.
  • Névéol A, Mork JG, Aronson AR. Automatic indexing of specialized documents: using generic vs. domain-specific document representations. Proc 2007 Workshop BioNL'07, 183-92.
  • Humphrey S, Rindflesch TC, Aronson AR. Automatic Journal Descriptor Indexing Extended to Indexing by UMLS Semantic Type Using the Cosine Document Similarity Measure. Proc. of the 11th SIG/CR Classification Research Workshop. 2000;103-16.
  • Mougin F, Burgun A, Bodenreider O, Chabalier J, Loreal O, Le Beux P. Automatic Methods for Integrating Biomedical Data Sources in a Mediator-Based System Proc DILS 2008. Berlin Heidelberg New York: Springer; 2008. p. 61-76
  • Jaeger S, Karargyris A, Candemir S, Folio L, Siegelman J, Callaghan FM, Xue Z, Palaniappan K, Singh RK, Antani SK, Thoma GR, Wang Y, Lu P, McDonald CJ. Automatic tuberculosis screening using chest radiographs. IEEE Trans Med Imaging. 2014 Feb;33(2):233-45. doi: 10.1109/TMI.2013.2284099. Epub 2013 Oct 1.
  • Roberts K, Kilicoglu H, Fiszman M, Demner-Fushman D. Automatically classifying question types for consumer health questions. AMIA Annu Symp Proc. 2014 Nov 14;2014:1018-27. eCollection 2014.
  • Mishra R, Del Fiol G, Kilicoglu H, Jonnalagadda S, Fiszman M. Automatically extracting clinically useful sentences from UpToDate to support clinicians' information needs. AMIA Annu Symp Proc. 2013 Nov 16;2013:987-92. eCollection 2013.
  • Jonnalagadda SR, Del Fiol G, Medlin R, Weir C, Fiszman M, Mostafa J, Liu H. Automatically extracting sentences from Medline citations to support clinicians' information needs. J Am Med Inform Assoc. 2013 Sep-Oct;20(5):995-1000. doi: 10.1136/amiajnl-2012-001347. Epub 2012 Oct 25.
  • Kayaalp M. Bayesian Methods for Diagnosing Physiological Conditions of Human Subjects from Multivariate Time Series Biosensor Data Physiological Data Modeling Contest, the Twenty-First International Conference on Machine Learning (ICML), 2004 July.
  • Névéol A, Zeng K, Bodenreider O. Besides precision & recall: exploring alternative approaches to evaluating an automatic indexing tool for MEDLINE. AMIA Annu Symp Proc. 2006:589-93.
  • Kim H, Goryachev S, Rosemblat G, Browne A, Keselman A, Zeng-Treitler Q. Beyond Surface Characteristics: A New Health Text-specific Readability Measurement AMIA Annu Symp Proc. 2007 Oct 11:418-22
  • He Y, Kayaalp M. Biological Entity Recognition with Conditional Random Fields AMIA Annu Symp Proc. 2008 Nov 6:293-7
  • Bodenreider O, Peters L, Nguyen T. Browser and application programming interfaces for drug information sources. AMIA Annu Symp Proc, 2011: p. 2129.
  • Divita G, Rosemblat G, Browne AC. Building a medical Spanish lexicon. AMIA Annu Symp Proc. 2007 Oct 11:941.
  • Campbell JR, Xu J, Fung K. Can SNOMED CT fulfill the vision of a compositional terminology? Analyzing the use case for problem list. AMIA Annu Symp Proc. 2011;2011:181-8. Epub 2011 Oct 22.
  • Kury F, Baik SH, McDonald CJ. Cardioprotective Drugs and Incident Dementias in Medicare's Big Data. AMIA 2017.
  • McKnight L, Srinivasan P. Categorization of sentence types in medical abstracts. AMIA Annu Symp Proc. 2003:440-4.
  • Kayaalp M, Browne AC, Sagan P, McGee T, McDonald CJ. Challenges and Insights in Using HIPAA Privacy Rule for Clinical Text Annotation. AMIA Annu Symp Proc. 2015 Nov 5;2015:707-16. eCollection 2015.
  • Bodenreider O. Circular hierarchical relationships in the UMLS: etiology, diagnosis, treatment, complications and prevention. Proc AMIA Symp. 2001:57-61.
  • Morid MA, Jonnalagadda S, Fiszman M, Raja K, Del Fiol G. Classification of Clinically Useful Sentences in MEDLINE. AMIA Annu Symp Proc. 2015 Nov 5;2015:2015-24. eCollection 2015.
  • Lu C, Payne A, Demner-Fushman D. Classification Types: A New Feature in the SPECIALIST Lexicon MIA 2019 Annual Symposium, Washington, DC, November 16-20, 2019.
  • Bergun A, Bodenreider O, Mougin F. Classifying diseases with respect to anatomy: a study in SNOMED CT AMIA Annu Symp Proc. 2005:91-5
  • Mrabet Y, Kilicoglu H, Roberts K, Demner-Fushman D. Combining Open-domain and Biomedical Knowledge for Topic Recognition in Consumer Health Questions. AMIA Annu Symp Proc. 2017 Feb 10;2016:914-923. eCollection 2016.
  • Fiszman M, Bray B, Shin D, Kilicoglu H, Bennett GC, Bodenreider O, Rindflesch TC. Combining relevance assignment with quality of the evidence to support guideline development. Stud Health Technol Inform. 2010;160(Pt 1):709-13.
  • Demner-Fushman D, Humphrey SM, Ide NC, Loane RF, Mork J, Ruch P, Ruiz ME, Smith LH, Wilbur WJ, Aronson AR. Combining Resources to Find Answers to Biomedical Questions Proc TREC 2007, 205-14
  • Bodenreider O. Comment les Usagers Accedent a l'Information Medicale Aux USA: l'Exemple de MEDLINEplus [How Consumers Access Health Information in the USA: The MEDLINEplus Example] Innovation et Technologie en Biologie et Medecine. 2000;21(5):286-90.
  • Mougin F, Burgun A, Bodenreider O. Comparing Drug-class Membership in ATC and NDF-RT Proc IHI 2012 2012:437-443
  • Geller J, Morrey CP, Xu J, Halper M, Elhanan G, Perl Y, Hripcsak G. Comparing inconsistent relationship configurations indicating UMLS errors. AMIA Annu Symp Proc. 2009 Nov 14;2009:193-7.
  • Mortensen J, Bodenreider O. Comparing Pharmacologic Classes in NDF-RT and SNOMED CT. Proc SMBM 2010:119-124.
  • Bodenreider O. Comparing SNOMED CT and the NCI Thesaurus through Semantic Web Technologies Proc. KR-MED 2008
  • Bodenreider O, Zhang S. Comparing the Representation of Anatomy in the FMA and SNOMED CT AMIA Annu Symp Proc. 2006:46-50
  • Mougin F, Bodenreider O. Comparing Two Approaches to Eliminating Cycles in Terminological Systems Proc RFIA 2006
  • Yepes AJ, Mork JG, Demner-Fushman D, Aronson AR. Comparison and combination of several MeSH indexing approaches. AMIA Annu Symp Proc. 2013 Nov 16;2013:709-18. eCollection 2013.
  • Wei D, Wang Y, Perl Y, Xu J, Halper M, Spackman KA. Complexity measures to track the evolution of a SNOMED hierarchy. AMIA Annu Symp Proc. 2008 Nov 6:778-82.
  • Lu C, Browne AC. Converting Unicode Lexicon and Lexical Tools for ASII NLP Applications AMIA Annu Symp Proc 2011:1870.
  • Kilicoglu H, Demner-Fushman D. Coreference Resolution for Structured Drug Product Labels Proceedings of BioNLP 2014. pp. 44-53.
  • Winnenburg R, Bodenreider O. Coverage of phenotypes in standard terminologies. Joint Bio-Ontologies and BioLINK ISMB'2014 SIG session "Phenotype Day" 2014:41-44. 
  • Fung KW, Richesson R, Bodenreider O. Coverage of rare disease names in standard terminologies and implications for patients, providers, and research. AMIA Annu Symp Proc. 2014 Nov 14;2014:564-72. eCollection 2014.
  • Buchanan BG, Chapman W, Cooper GF, Hanbury P, Kayaalp M, Ramachandran M, Saul M. Creating a Software Tool for the Clinical Researcher -- the IPS System Proc AMIA Symp. 2002: : 1210.
  • Rosemblat G, Graham L. Cross-Language Search in a Monolingual Health Information System: Flexible Designs and Lexical Processes Proc ISKO, pages 173-182, Vienna, Austria, July 2006.
  • McDonald CJ, Abhyankar S, Taft L. Dataset: common units of measure - subset of the Unified Code for Units of Measure.
  • Fung KW. Dataset: CORE problem list of SNOMED CT.
  • Fung KW. Dataset: ICD-9-CM to SNOMED CT Map
  • Abhyankar S, Goodwin RM, Zuckerman AE, McDonald CJ. Dataset: newborn screening LOINC codes (AHIC panel).
  • Abhyankar S, Goodwin RM, Zuckerman AE, McDonald CJ. Dataset: Newborn screening LOINC panel.
  • Abhyankar S, Goodwin RM, Zuckerman A, McDonald CJ. Dataset: newborn screening results annotated example HL7 electronic message guidance (v 5.2).
  • Fung KW. Dataset: Nursing Problem List Subset of SNOMED CT
  • Fung KW. Dataset: SNOMED CT route of administration subset.
  • Fung K. Dataset: SNOMED CT to ICD-10 Cross Map
  • Fung K. Dataset: SNOMED CT to ICD-10-CM Map
  • Kilicoglu H. Dataset: Sortal Anaphora Dataset
  • Kilicoglu H. Dataset: Structured Drug Product Label (SPL) Coreference Dataset
  • Botti G, Bodenreider O, Burgun A, Le Beux P, Fieschi M. De la Classification à la Connaissance des Maladies: Une Réflexion à Partir de la Classification Internationale des Maladies [From Classification to Knowledge About Diseases: Thoughts about the International Classification of Diseases] Innovation et Technologie en Biologie et Médecine. 2000;21(5):291-97.
  • Kayaalp M, Browne AC, Dodd Z, Sagan P, McDonald CJ. De-identification of Address, Date, and Alphanumeric Identifiers in Narrative Clinical Reports. AMIA Annu Symp Proc. 2014 Nov 14;2014:767-76. eCollection 2014.
  • Fung K, Gutierrez A, Ameye F, D’Have A, Ariel B. Demonstrating the Benefits of Mapping SNOMED CT to ICD-10-PCS through a Prototype Application for End User Implementation. SNOMED Expo Oct 2017, Bratislava, Slovakia pp. 0
  • Winnenburg R, Bodenreider O. Desiderata for an authoritative Representation of MeSH in RDF. AMIA Annu Symp Proc. 2014 Nov 14;2014:1218-27. eCollection 2014.
  • Winnenburg R, Bodenreider O. Desiderata for an authoritative representation of MeSH in RDF. AMIA Annu Symp Proc 2014:1218-1227.
  • Bodenreider O, Burgun A. Desiderata for an Ontology of Diseases for the Annotation of Biological Datasets Proc ICBO 2009:39-42
  • Kury F, Bodenreider O. Desiderata for drug classification systems for their use in analyzing large drug prescription datasets. Proceedings of the 3rd Workshop on Data Mining for Medical Informatics (DMMI 2016), 2016.
  • Zeng K, Bodenreider O, Nelson SJ. Design and Implementation of a Personal Medication Record - MyMedicationList AMIA Annu Symp Proc. 2008 Nov 6:844-8
  • Bernhardt PJ, Humphrey SM, Rindflesch TC. Determining Prominent Subdomains in Medicine. AMIA Annu Symp Proc. 2005:46-50.
  • Weeber M, Mork JG, Aronson AR. Developing a Test Collection for Biomedical Word Sense Disambiguation Proc AMIA Symp. 2001:746-50.
  • Lu CJ, Bangalore A, Tse T. Developing Web Browser Recording Tools Using Server-Side Programming Technology. Proc. of WebNet 2000, World conference on WWW and Internet: Association for the Advancement of Computing in Education. 2000;:372-7.
  • Madani S, Henderson J, Fung K. Development of an oncology subset of SNOMED CT based on patient notes. AMIA Annu Symp Proc 2016: 91-92.
  • Lu C, Browne AC. Development of Sub-Term Mapping Tools (STMT) AMIA 2012 Annual Symposium, Chicago, IL, November 3-7, 2012
  • Lu C, Divita G, Browne AC. Development of Visual Tagging Tool AMIA Annu Symp Proc 2010:1156.
  • Workman E, Weir, C, Rindflesch TC. Differentiating Sense through Semantic Interaction Data. AMIA Annu Symp Proc. 2017 Feb 10;2016:1238-1247. eCollection 2016.
  • Hole WT, Srinivasan S. Discovering Missed Synonymy in a Large Concept-Orientated Methathesaurus AMIA Annu Symp Proc. 2000;():354-8.
  • Nguyen V, Bodenreider O, Sheth AP. Don't Like RDF Reification? Making Statements about Statements Using Singleton Property. Proc Int World Wide Web Conf. 2014 Apr 11;2014:759-770.
  • Divita G, Browne AC, Loanne R. dTagger: A POS Tagger AMIA Annu Symp Proc. 2006:200-3
  • Prettyman, M, Antonucci, R, Lynch P, Mericle L. Electronic Publication of Health Information in an Objected-Oriented Environment. Proceedings of the 62nd Annual Meeting of the American Society for Information Science. Washington, DC, October 1999.
  • Bahr NJ, Nelson SD, Winnenburg R, Bodenreider O. Eliciting the Intension of Drug Value Sets - Principles and Quality Assurance Applications. Stud Health Technol Inform. 2017;245:843-847.
  • Beaudoin DE, Rocha RA, Tse T. Enhancing Access to Patient Education Information: A Pilot Usability Study AMIA Annu Symp Proc. 2005:892
  • Vizenor L, Bodenreider O, Peters L, McCray AT. Enhancing Biomedical Ontologies through Alignment of Semantic Relationships: Exploratory Approaches AMIA Annu Symp Proc. 2006:804-8.
  • Lu C, Tormey D, McCreedy L, Browne AC. Enhancing LexSynonym Features in the Lexical Tools AMIA 2017 Annual Symposium, Washington, DC, November 04-08, 2017, p. 2090
  • Winnenburg R, Bodenreider O. Evaluating the consistency of inferred drug-class membership relations in NDF-RT. Proc 17th ISMB'2014 SIG meeting "Bio-Ontologies" 2014
  • Névéol A, Mork JG, Aronson AR, Darmoni SJ. Evaluation of French and English MeSH indexing systems with a parallel corpus. AMIA Annu Symp Proc. 2005:565-9.
  • Cohen T, Widdows D, Rindflesch TC. Expansion-by-analogy: A vector symbolic approach to semantic search. AAAI-Fall 2014 Symposium on Quantum Informatics for Cognitive, Social, and Semantic Processes.
  • Zhang S, Bodenreider O, Golbreich C. Experience in Reasoning with the Foundational Model of Anatomy in OWL DL Pac Symp Biocomput. 2006:200-11
  • Hristovski D, Friedman C, Rindflesch TC. Exploiting Semantic Relations for Literature-Based Discovery AMIA Annu Symp Proc. 2006:349-53
  • Erdogan H, Erdem E, Bodenreider O. Exploiting UMLS semantics for checking semantic consistency among UMLS concepts. Stud Health Technol Inform. 2010;160(Pt 1):749-53.
  • Graham L, Tse T, Keselman A. Exploring User Navigation during Online Health Information Seeking AMIA Annu Symp Proc. 2006:299-303
  • Fu GE, Bolton NQ, Rosinach LI, Furlong V, Nguyen AP, Sheth O, Bodenreider O, Dumontier M. Exposing provenance metadata using different RDF models. Proceedings of the International Conference on Semantic Web Applications and Tools for Life Sciences (SWAT4LS 2015), 2015: p. (electronic proceedings: http://www.swat4ls.org/wp-content/uploads/2015/10/SWAT4LS_2015_paper_11.pdf).
  • McCray AT, Gallagher ME, Flannick MA. Extending the role of metadata in a digital library system. In: Proceedings of the IEEE Forum on Research and Technology Advances in Digital Libraries, pp. 190-9, 1999.
  • Demner-Fushman D, Mork JG. Extracting Characteristics of the Study Subjects from Full-Text Articles. AMIA Annu Symp Proc. 2015 Nov 5;2015:484-91. eCollection 2015.
  • Rindflesch TC, Rajan J, Hunter L. Extracting Molecular Binding Relationships from Biomedical Text Proc. of the 6th Applied Natural Language Processing Conference. 2000;: 188-95.
  • Ahlers C, Fiszman M, Demner-Fushman D, Lang F, Rindflesch TC. Extracting Semantic Predications from MEDLINE Citations for Pharmacogenomics Pacific Symposium on Biocomputing 2007 12:209-220
  • Rosemblat G, Graham L, Tse T. Extractive Summarization in Clinical Trials Protocol Summaries: A Case Study Proc IICAI-2007, pp. 1824-1837
  • Demner-Fushman D, Humphrey SM, Ide NC, Loane RF, Ruch P, Ruiz ME, Smith LH, Tanabe LK, Wilbur WJ, Aronson AR. Finding Relevant Passages in Scientific Articles: Fusion of Automatic Approaches vs. an Interactive Team Effort. Proc TREC 2006, 569-76.
  • Névéol A, Shooshan SE, Mork JG, Aronson AR. Fine-grained indexing of the biomedical literature: MeSH subheading attachment for a MEDLINE indexing tool. AMIA Annu Symp Proc. 2007 Oct 11:553-7.
  • Zarin D, Tse T, Williams R. Frequency and nature of changes in primary outcome measures. Presented at: Sixth International Congress on Peer Review and Biomedical Publication; September 2009; Vancouver, BC, Canada.
  • Bodenreider O, Aubry M, Burgun A. From Functional Similarity Among Gene Products to Dependence Relations Among Gene Ontology Terms Proc SOFG, 2004:53.
  • Aronson AR, Bodenreider O, Demner-Fushman D, Fung KW, Lee VK, Mork JG, Névéol A, Peters L, Rogers WJ. From indexing the biomedical literature to coding clinical text: experience with MTI and machine learning approaches. Proc 2007 Workshop BioNL'07, June 2007, pp. 105-112, Prague, Czech Republic.
  • Aronson AR, Demner-Fushman D, Humphrey SM, Lin J, Liu H, Ruch P, Ruiz ME, Smith LH, Tanabe LK, Wilbur WJ. Fusion of Knowledge-intensive and Statistical Approaches for Retrieving and Annotating Textual Genomics Documents Proc TREC 2005, 36-45
  • Wang H, Azuaje F, Bodenreider O, Dopazo J. Gene Expression Correlation and Gene Ontology-Based Similarity: An Assessment of Quantitative Relationships Proceedings of the 2004 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB'2004) 2004:25-31.
  • Mitchell JA, Aronson AR, Mork JG, Folk LC, Humphrey SM, Ward JM. Gene Indexing: Characterization and Analysis of NLM's GeneRIFs. AMIA Annu Symp Proc. 2003:460-4.
  • Azuaje FJ, Bodenreider O, Wang H, Dopazo J. Gene Ontology-Driven Similarity for Gene Expression Correlation Analysis Proceedings of the second conference on Standards and Ontologies for Functional Genomics (SOFG 2) 2004:47.
  • Sehgal AK, Srinivasan P, Bodenreider O. Gene Terms and English Words: An Ambiguous Mix Proc of the SIGIR 2004 Workshop on Search and Discovery in Bioinformatics 2004.
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  • Xu J, Fung KW. Handling age specification in the SNOMED CT to ICD-10-CM cross-map. AMIA Annu Symp Proc. 2012;2012:1014-22. Epub 2012 Nov 3.
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  • Jimeno Yepes AJ, Mork JG, Aronson A. Identifying Publication Types Using Machine Learning. BioASQ Workshop 2013.
  • Fiszman M, Rosemblat G, AhlersCB, Rindflesch TC. Identifying Risk Factors for Metabolic Syndrome in Biomedical Text AMIA Annu Symp Proc. 2007 Oct 11:249-53
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  • Lu C, Demner-Fushman D. Improving Spelling Correction with Consumer Health Terminology . AMIA 2018 Annual Symposium, San Francisco, CA, November 3-7, 2018, p. 2053.
  • Bodenreider O, Azuaje F. Incorporating Ontology-Driven Similarity Knowledge Into Functional Genomics: An Exploratory Study Proceedings of the 2004 IEEE Fourth Symposium on Bioinformatics and Bioengineering (BIBE-2004) 2004:317-324.
  • Kilicoglu H. Inferring Implicit Causal Relationships in Biomedical Literature. Proc 15th Workshop on Biomedical Natural Language Processing. Pages 46-55. 2016.
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  • Doughty E, Kirk B, Kann MG, Bodenreider O. Integrating Drug-gene Associations Mined from the Literature with Drug Information Sources - A Comparison with PharmGKB Proceedings of the 2011 PSB Workshop on Mining the Pharmacogenomics Literature 2011
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  • Dhombres F, Bodenreider O. Investigating the lexico-syntactic properties of phenotype terms – Application to interoperability between HPO and SNOMED CT. Proc Joint Bio-Ontologies and BioLINK ISMB'2015 SIG session "Phenotype Day" 2015:8-11.
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  • Aronson AR, Demner-Fushman D, Humphrey SM, Ide NC, Kim W, Liu H, Loane RF, Mork JG, Smith LH, Tanabe LK, Wilbur WJ, Xie N. Knowledge-intensive and statistical approaches to the retrieval and annotation of genomics MEDLINE citations. The Thirteenth Text Retrieval Conference (TREC 2004). 2004:503-11.
  • Boyce RD, Voss EA, Huser V, Evans L, Reich C, Duke JD, Tatonetti NP, Lorberbaum T, Dumontier M, Hauben M, Wallberg M. LAERTES: An open scalable architecture for linking pharmacovigilance evidence sources with clinical data. Proc International Conference on Biomedical Ontology and BioCreative (ICBO BioCreative 2016). http://icbo2016.cgrb.oregonstate.edu/node/354.
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  • Zhang S, Mork P, Bodenreider O. Lessons Learned from Aligning two Representations of Anatomy Proc of the First International Workshop on Formal Biomedical Knowledge Representation (KR-MED 2004); 2004. p. 102-108.
  • Zhang S, Bodenreider O. Lessons Learned from Cross-Validating Alignments Between Large Anatomical Ontologies Stud Health Technol Inform. 2007;129(Pt 1):822-6
  • Hurdle JF, Botkin J, Rindflesch TC. Leveraging Semantic Knowledge in IRB Databases to Improve Translation Science AMIA Annu Symp Proc. 2007 Oct 11:349-53
  • Bodenreider O. Lexical, Terminological and Ontological Resources for Biological Text Mining Ananiadou S, McNaught J, editors. Text mining for biology and biomedicine: Artech House; 2006. p. 43-66.
  • Kastrin A, Rindflesch TC, Hristovski D. Link prediction on the Semantic MEDLINE Network. Proceedings of the 17th International conference on Discovery Science.
  • Bodenreider O, Burgun A. Linking the Gene Ontology to other biological ontologies Proc ISMB'2005 SIG meeting on Bio-ontologies 2005:17-18
  • Cohen T, Widdows D, Schvaneveldt RW, Rindflesch TC. Logical Leaps and Quantum Connectives: Forging Paths through Predication Space AAAI-Fall 2010 Symposium on Quantum Informatics for Cognitive, Social, and Semantic Processes
  • Mougin F, Bodenreider O, Burgun A. Looking for Anemia (and Other Disorders) in SNOMED CT: Comparison of Three Approaches and Practical Implications. AMIA Annu Symp Proc. 2010 Nov 13;2010:527-31.
  • Rosemblat G, Gemoets D, Browne AC, Tse T. Machine Translation-Supported Cross Language Information Retrieval for a Consumer Health Resource AMIA Annu Symp Proc. 2003:564-8.
  • Zhang GQ, Zhu W, Sun M, Tao S, Bodenreider O, Cui L. MaPLE: A MapReduce Pipeline for Lattice-based Evaluation and Its Application to SNOMED CT. Proc IEEE Int Conf Big Data. 2014 Oct;2014:754-759.
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  • Jimeno-Yepes A, Mork JG, Wilkowski B, Demner-Fushman D, Aronson AR. MEDLINE MeSH indexing: lessons learned from machine learning and future directions. Proc IHI 2012, 737-742.
  • Jimeno-Yepes A, Wilkowski B, Mork JG, Demner-Fushman D, Aronson AR. MeSH indexing: machine learning and lessons learned. ACM SIGHIT International Health Informatics Symposium, Miami, FL, USA, 2012.
  • Mork J, Peters L, Jimeno-Yepes A, Aronson AR, Bodenreider O. MetaMap in the CALBC Workshop II. CALBC Workshop II, March 2011.
  • Bhupatiraju R, Fung K, Bodenreider O. MetaMapLite in Excel: Biomedical named-entity recognition for non-technical users. Stud Health Technol Inform (Proc Medinfo): 1252.
  • Aronson AR, Mork JG, Neveol A, Shooshan SE, Demner-Fushman D. Methodology for Creating UMLS Content Views Appropriate for Biomedical Natural Language Processing AMIA Annu Symp Proc. 2008 Nov 6:21-5
  • Kayaalp M, Aronson AR, Humphrey SM, Ide NC, Tanabe LK, Smith LH, Demner-Fushman D, Loane RF, Mork JG, Bodenreider O. Methods for accurate retrieval of MEDLINE citations in functional genomics. The Twelfth Text Retrieval Conference (TREC 2003). 2003:441-50.
  • Peters L, Kapusnik-Uner JE, Bodenreider O. Methods for managing variation in clinical drug names. AMIA Annu Symp Proc. 2010 Nov 13;2010:637-41.
  • Winnenburg R, Bodenreider O. Metrics for assessing the quality of value sets in clinical quality measures. AMIA Annu Symp Proc. 2013 Nov 16;2013:1497-505. eCollection 2013.
  • Golbreich C, Zhang S, Bodenreider O. Migrating the FMA from Protege to OWL Proc of the Eighth International Protege Conference 2005:108-111.
  • An L, Obradovic Z, Smith D, Bodenreider O, Megalooikonomou V. Mining Association Rules among Gene Functions in Clusters of Similar Gene Expression Maps. Workshop proceedings of the IEEE International Conference on Bioinformatics and Biomedicine (BIBM09) -- Workshop on Data Mining in Functional Genomics 2009: p. 254-259
  • Demner-Fushman D, Mork JG, Aronson AR. Mining MEDLINE for problems associated with vitamin D. AMIA Annu Symp Proc. 2013 Nov 16;2013:300-8. eCollection 2013.
  • Rodriguez L, Morrison SM, Greenberg K, Demner-Fushman D. Mining the literature for genes associated with placenta-mediated maternal diseases. AMIA Annu Symp Proc. 2018 Apr 16;2017:1498-1506. eCollection 2017.
  • Altemus AR. Mobile App: Native Voices: Native Peoples' Concepts of Health and Illness
  • Jacquelinet C, Bodenreider O, Burgun A. Modelling Syllepse in Medical Knowledge Bases with Application in the Domain of Organ Failure and Transplantation Proc. of OntoLex; Workshop on Ontologies and Lexical Knowledge Bases 2000.
  • Kayaalp M. Modes of De-identification. AMIA Annu Symp Proc. 2018 Apr 16;2017:1044-1050. eCollection 2017.
  • Bodenreider O. Multi-lingual features of the Unified Medical Language System. Proc. CLEF-ER 2013 workshop 2013.
  • Névéol A, Shooshan SE, Humphrey SM, Rindflesch TC, Aronson AR. Multiple approaches to fine-grained indexing of the biomedical literature. Pac Symp Biocomput. 2007:292-303.
  • Callaghan F, Chang CCH. Multivariate Survival Trees for Competing Risks. Joint Statistical Meeting Proceedings, Denver CO, 2008.
  • Nelson SJ, Zeng K, Bodenreider O. MyMedicationList: Integrating Personal Medication Records with Resources AMIA Annu Symp Proc. 2008 Nov 6:1228
  • Ben Abacha A, de Herrera A, Wang Ke, Long LR, Antani SK, Demner-Fushman D. Named entity recognition in functional neuroimaging literature. 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Kansas City, MO, 2017, pp. 2218-2220.
  • Le T, Rance B, Bodenreider O. Network visualization of UMLS source vocabularies using semantic groups. AMIA Annu Symp Proc, 2013: p. 90
  • Goodwin RM, Abhyankar S, Zuckerman AE, Copeland SM, Sarkar D, Cuthbert C, Therrell BL, Ojodu J, Lloyd-Puryear MA, Jenders RA, McDonald CJ. Newborn screening health information exchange: updated guidance for coding and HL7 electronic messaging. APHL Newborn Screening and Genetics Testing Symposium. 2011 Nov 7.
  • Zhang S, Bodenreider O. NLM Anatomical Ontology Alignment system: Results of the 2006 ontology alignment contest Proc OAEI 2006 2006:145-156
  • Mork JG, Bodenreider O, Demner-Fushman D, Doagan RI, Lang F-M, Lu Z, Névéol A, Peters L, Shooshan SE, Aronson AR. NLM's I2B2 tool system description. Third i2b2 Workshop on Natural Language Processing Challenges for Clinical Records, November, San Francisco, 2009
  • Callaghan F, Jackson MT, Demner-Fushman D, Abhyankar S, McDonald CJ. NLP-derived information improves the estimates of risk of disease compared to estimates based on manually extracted data alone. 5th International Symposium on Semantic Mining in Biomedicine (SMBM 2012), 2012 Sept 3-4, Zurich, Switzerland.
  • Bodenreider O, Aubry M, Burgun A. Non-Lexical Approaches to Identifying Associative Relations in the Gene Ontology Pac Symp Biocomput. 2005:91-102
  • Bodenreider O, Hayamizu TF, Ringwald M, De Coronado S, Zhang S. Of mice and men: aligning mouse and human anatomies. AMIA Annu Symp Proc. 2005:61-5.
  • Bodenreider O, Burgun A. Oncologic Pathology in Biomedical Terminologies: Challenges for Data Integration Proc APIII conference on "Anatomic Pathology Informatics and Imaging Support for Translational Medicine", Pittsburgh, Pennsylvania, September 9-12, 2007:Abstract 342.
  • Bodenreider O. Ontologies and Data Integration in Biomedicine: Success Stories and Challenging Issues In: Bairoch A, Cohen-Boulakia S, Froidevaux C, editors. Proceedings of the Fifth International Workshop on Data Integration in the Life Sciences (DILS 2008); Berlin Heidelberg New York: Springer; 2008. p. 1-4
  • Walker FL, Gallagher ME, Thoma GR. PDF File Migration to PDF/A: Technical Considerations. Proc IS&T Archiving 2007. Arlington, Virginia, May 2007; 6-11.
  • Huser, V, Kayaalp M, Dodd Z, Cimino J. Piloting a deceased subject integrated data repository and protecting privacy of relatives. AMIA Annu Symp Proc. 2014 Nov 14;2014:719-28. eCollection 2014.
  • Huser V, Cimino JJ. Precision and negative predictive value of links between ClinicalTrials.gov and PubMed. AMIA Annu Symp Proc. 2012;2012:400-8. Epub 2012 Nov 3.
  • Cohen T, Schvaneveldt R, Rindflesch TC. Predication-based semantic indexing: permutations as a means to encode predications in semantic space. AMIA Annu Symp Proc. 2009 Nov 14;2009:114-8.
  • Kayaalp M, Cooper GF, Clemont G. Predicting ICU mortality: a comparison of stationary and nonstationary temporal models. Proc AMIA Symp. 2000:418-22.
  • Azuaje F, Wang H, Zheng H, Bodenreider O, Chesneau A. Predictive Integration of Gene Ontology-Driven Similarity and Functional Interactions Proc ICDM 2006, Workshop on Data Mining in Bioinformatics: IEEE Computer Society Press; 2006. p. 114 - 119
  • Logan RA, Shin JH, Park J. Prevailing Impressions of Social Actors in Korean News Coverage of a Public Health Crisis Science Communication. 25:4:399-418 (June 2004)
  • Sahoo SS, Bodenreider O, Hitzler P, Sheth A, Thirunarayan K. Provenance Context Entity (PaCE): Scalable Provenance Tracking for Scientific RDF Data SSDBM: Springer, 2010. p. 461-470
  • Bodenreider O. Provenance information in biomedical knowledge repositories – A use case. Proceedings of the First International Workshop on the role of Semantic Web in Provenance Management (SWPM 2009), 2009: p. (electronic proceedings: http://ceur-ws.org/Vol-526/).
  • Adamusiak T, Bodenreider O. Quality assurance in LOINC using Description Logic. AMIA Annu Symp Proc. 2012;2012:1099-108. Epub 2012 Nov 3.
  • Jimeno-Yepes A, Aronson AR. Query expansion for UMLS Metathesaurus disambiguation based on automatic corpus extraction. ICMLA 2010, Dec 2010.
  • Wei W, Demner-Fushman D, Wang S, Jiang X, Ohno-Machado L. Ranking Medical Subject Headings using a factor graph model. AMIA Jt Summits Transl Sci Proc. 2015 Mar 23;2015:56-63. eCollection 2015.
  • Mork JG, Demner-Fushman D, Schmidt SC, Aronson A. Recent Enhancements to the NLM Medical Text Indexer. BioASQ 2014.
  • Kury F, Huser V, Cimino JJ. Reproducing a Prospective Clinical Study as a Computational Retrospective Study in MIMIC-II. AMIA Annu Symp Proc. 2015 Nov 5;2015:804-13. eCollection 2015.
  • Roberts K, Rodriguez L, Shooshan SE, Demner-Fushman D. Resource Classification for Medical Questions. AMIA Annu Symp Proc. 2017 Feb 10;2016:1040-1049. eCollection 2016.
  • Zeng K, Bodenreider O, Nelson SJ. RxNav: A Progress Report AMIA Annu Symp Proc 2005:1168
  • Zeng K, Bodenreider O, Kilbourne J, Nelson SJ. RxNav: A Web Service for Standard Drug Information AMIA Annu Symp Proc. 2006:1156
  • Zeng K, Bodenreider O, Kilbourne J, Nelson SJ. RxNav: An Integrated View on Drug Information Proc AMIA Annu Symp; 2007:1202
  • Zeng K, Bodenreider O, Kilbourne J, Nelson S. RxNav: Towards an Integrated View on Drug Information MEDINFO 2007:386.
  • Fung KW, McDonald C, Bray BE. RxTerms - a drug interface terminology derived from RxNorm. AMIA Annu Symp Proc. 2008 Nov 6:227-31
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  • Bangalore AK, Sood AK. Securing web servers using self-cleansing intrusion tolerance (SCIT). 2009 Second International Conference on Dependability. 2009:60-5.
  • Jimeno-Yepes A, Aronson AR. Self-training and co-training in biomedical word sense disambiguation. BioNLP 2011 Workshop, June 2011, 182-183.
  • Sneiderman C, Demner-Fushman D, Fiszman M, Rindflesch TC. Semantic Characteristics of MEDLINE Citations Useful for Therapeutic Decision-making AMIA Annu Symp Proc. 2005:1117.
  • Cairelli MJ, Miller CM, Fiszman M, Workman TE, Rindflesch TC. Semantic MEDLINE for discovery browsing: using semantic predications and the literature-based discovery paradigm to elucidate a mechanism for the obesity paradox. AMIA Annu Symp Proc. 2013 Nov 16;2013:164-73. eCollection 2013.
  • Kilicoglu H, Fiszman M, Rodriguez A, Shin D, Ripple AM, Rindflesch TC. Semantic MEDLINE: A Web Application for Managing the Results of PubMed Searches Proc. Third Int'l Symposium for Semantic Mining in Biomedicine, 69-76
  • Cameron D, Kavuluru R, Bodenreider O, Mendes PN, Sheth AP, Thirunarayan K. Semantic predications for complex information needs in biomedical literature BIBM 2011:512-519.
  • Sneiderman C, Demner-Fushman D, Fiszman M, Rosemblat G, Lang FM, Norwood D, Rindflesch TC. Semantic Processing to Enhance Retrieval of Diagnosis Citations from Medline AMIA Annu Symp Proc. 2006:1104
  • Culbertson A, Fiszman M, Shin D, Rindflesch TC. Semantic processing to identify adverse drug event information from black box warnings. AMIA Annu Symp Proc. 2014 Nov 14;2014:442-8. eCollection 2014.
  • Fiszman M, Ortiz E, Bray BE, Rindflesch TC. Semantic Processing to Support Clinical Guideline Development AMIA Annu Symp Proc. 2008 Nov 6:187-91
  • Rindflesch TC, Libbus B, Hristovski D, Aronson AR, Kilicoglu H. Semantic Relations Asserting the Etiology of Genetic Diseases AMIA Annu Symp Proc. 2003:554-8.
  • Hristovski D, Kastrin A, Peterlin P, Rindflesch TC. Semantic relations for interpreting DNA microarray data. AMIA Annu Symp Proc. 2009 Nov 14;2009:255-9.
  • Gay CW, Kayaalp M, Aronson AR. Semi-Automatic Indexing of Full Text Biomedical Articles AMIA Annu Symp Proc. 2005:271-5
  • Fung K, Berglund D, Scichilone R, Brear H, Giannangelo K. SNOMED CT to ICD-10 mapping project update - a joint task for IHTSDO and WHO-FIC. Meeting of the WHO Collaborating Centers for the Family of International Classifications. October 2009.
  • Rogers J, Bodenreider O. SNOMED CT: Browsing the Browsers Proc of the Third International Conference on Knowledge Representation in Medicine (KR-MED 2008) 2008:30-36
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  • Bodenreider O, Zweigenbaum P. Strategies d'Identification des Noms Propres a Partir de Nomenclatures Medicales Paralleles Traitement Automatique des Langues. 2000;41(3):727-757.
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  • Demner-Fushman D, Abhyankar S. Syntactic-semantic question frames for cohort identification. The 2012 Joint Summits on Translational Science. San Francisco, CA. March 2012.
  • Xiaocheng L, Prettyman M, Antonucci R. System Expansion and Integration with Agents in HSTAT Proc. of the World Multiconference on Systemics, Cybernetics, and Informatics. 2000 Jul.
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  • Mrabet Y, Kilicoglu H, Demner-Fushman D. TextFlow: A Text Similarity Measure based on Continuous Sequences. Proceedings of the 55th Annual Meeting of the Association for Computational Linguistics, 2017, Vancouver, Canada, July 30 - August 4, Volume
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  • Rosemblat G, Logan R. The Consumers' Perspective: Text Features and Readability of Consumer Health Text Mednet 2007: Germany. 12 Oct 2007
  • Homer ML, Palmer NP, Bodenreider O, Cami A, Chadwick L, Mandl KD. The Drug Data to Knowledge Pipeline: Large-Scale Claims Data Classification for Pharmacologic Insight. AMIA Jt Summits Transl Sci Proc. 2016 Jul 20;2016:105-11. eCollection 2016.
  • Kwok CK, Cheung NT, Fung KW, et al.. The electronic patient record in the hospital authority. APAMI – MIC 2000 Conference. September 2000.
  • Aronson AR, Lang FM. The Evolution of MetaMap, a Concept Search Program for Biomedical Text AMIA Annu Symp Proc. 2009 Nov:22
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  • Leroy G, Fiszman M, Rindflesch TC. The Impact of Directionality in Predications on Text Mining Hawaii International Conference on System Sciences (HICSS-41), January 2008
  • Smith LH, Rindflesch TC, Wilbur WJ. The Importance of the Lexicon in Tagging Biological Text Natural Language Engineering 2005.
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