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Yu Z, Nguyen T, Dhombres F, Johnson T, Bodenreider O."Hybrid Topics" - Facilitating the Interpretation of Topics Through the Addition of MeSH Descriptors to Bags of Words. Stud Health Technol Inform. 2017;245:662-666.
Lin MC, Vreeman DJ, McDonald CJ, Huff SM.A characterization of local LOINC mapping for laboratory tests in three large institutions. Methods Inf Med. 2011;50(2):105-14. doi: 10.3414/ME09-01-0072. Epub 2010 Aug 20.
Rahman MM, Antani SK, Thoma GR.A Classification-Driven Similarity Matching Framework For Retrieval of Biomedical Images. 11th ACM International Conference on Multimedia Information Retrieval (MIR 2010). 2010:147-154.
Thomas SM, Overhage JM, Warvel J, McDonald CJ.A comparison of a printed patient summary document with its electronic equivalent: early results. Proc AMIA Symp. 2001:701-5.
Hunt S, Cimino J, Koziol DE.A comparison of clinicians' access to online knowledge resources using two types of information retrieval applications in an academic hospital setting. J Med Libr Assoc. 2013 Jan;101(1):26-31. doi: 10.3163/1536-5050.101.1.005.
Vreeman DJ, McDonald CJ.A comparison of Intelligent Mapper and document similarity scores for mapping local radiology terms to LOINC. AMIA Annu Symp Proc. 2006:809-13.
Overhage JM, Grannis S, McDonald CJ.A comparison of the completeness and timeliness of automated electronic laboritory reporting and spontaneous reporting of notifiable conditions. Am J Public Health. 2008 Feb;98(2):344-50. Epub 2008 Jan 2
Kroth PJ, Dexter PR, Overhage JM, Knipe C, Hui SL, Belsito A, McDonald CJ.A computerized decision support system improves the accuracy of temperature capture from nursing personnel at the bedside. AMIA Annu Symp Proc. 2006:444-8.
Dexter PR, Perkins S, Overhage JM, Maharry K, Kohler RB, McDonald CJ.A computerized reminder system to increase the use of preventive care for hospitalized patients. N Engl J Med. 2001 Sep 27;345(13):965-70.
Bakker TA, Ryce AN, Logan RA, Tse T, Hutcherson LY.A Consumer Health Informatics (CHI) Toolbox: Challenges and Implications AMIA Annu Symp Proc. 2005:21-5
Lau JJ, Gayen S, Ben Abacha A, Demner-Fushman D.A dataset of clinically generated visual questions and answers about radiology images. Sci Data. 2018 Nov 20;5:180251. doi: 10.1038/sdata.2018.251.
Winnenburg R, Bodenreider O.A framework for assessing the consistency of drug classes across sources. J Biomed Semantics. 2014 Jul 9;5:30. doi: 10.1186/2041-1480-5-30. eCollection 2014.
Biondich PG, Overhage JM, Dexter PR, Downs SM, Lemmon L, McDonald CJ.A modern optical character recognition system in a real world clinical setting: some accuracy and feasibility observations. Proc AMIA Symp. 2002:56-60.
Weiner M, Stump TE, Callahan CM, Lewis JN, McDonald CJ.A practical method of linking data from Medicare claims and a comprehensive electronic medical records system. Int J Med Inform. 2003 Aug;71(1):57-69.
Bodenreider O, Coban ZH, Doganay MC, Erdem E, Kosucu H.A preliminary report on answering complex queries related to drug discovery using answer set programming. Proceedings of the 3rd International Workshop on Applications of Logic Programming to the (Semantic) Web and Web Services (ALPSWS2008), 2008: p. 85-90 (electronic proceedings: http://ceur-ws.org/Vol-434/).
Deardorff A, Masterton K, Roberts K, Kilicoglu H, Demner-Fushman D.A protocol-driven approach to automatically finding authoritative answers to consumer health questions in online resources. JASIST, 68(7): 1724-1736. doi: 10.1002/asi.23806.
Demner-Fushman D, Seckman C, Fisher C, Hauser SE, Clayton J, Thoma GR.A prototype system to support evidence-based practice AMIA Annu Symp Proc. 2008 Nov 6:151-5.