| National Library of Medicine

Lu C, Aronson, AR, Shooshan SE, Demner-Fushman D. Spell checker for consumer language (CSpell). J Am Med Inform Assoc. 2019 Jan 21. doi: 10.1093/jamia/ocy171. [Epub ahead of print]

Abstract | PMID: 30668712

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Bhupatiraju R, Huser V, Fung K. Phenotype modelling tools utilizing standardized EHR data in a Common Data Model format [Poster]. NIH Research Festival 2017.

Abstract | pub9631.pdf

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Collins H, Calvo SC, Greenberg K, Forman NL, Morrison SM. Using Genetics Home Reference to Reinforce Patient Education [Poster]. American College of Medical Genetics Annual Meeting, Phoenix, AZ, March 21-25, 2017.

Abstract | pub9564.pdf

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Kilicoglu H. Dataset: Consumer Health Spelling Error Dataset

Abstract | URL: https://ceb.nlm.nih.gov/ridem/infobot_docs/CHQA_SpellCorrection_Dataset.zip

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Deardorff A, Masterton K, Roberts K, Kilicoglu H, Demner-Fushman D. A protocol-driven approach to automatically finding authoritative answers to consumer health questions in online resources. JASIST, 68(7): 1724-1736. doi: 10.1002/asi.23806.

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Greenberg K, Calvo SC, Collins H, Foreman NL, Morrison SM. Genetics Home Reference: A point of care resource in the genomic medicine era [Poster]. American Society of Human Genetics Annual Meeting, Vancouver, British Columbia, Canada, November 18-22, 2016.

Abstract | pub9563.pdf

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Demner-Fushman D, Elhadad N. Aspiring to Unintended Consequences of Natural Language Processing: A Review of Recent Developments in Clinical and Consumer-Generated Text Processing. IMIA Yearbook of Medical Informatics 2016.

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Mrabet Y, Kilicoglu H, Demner-Fushman D. Unsupervised Ranking of Knowledge Bases for Named Entity Recognition. ECAI 2016, The Hague, The Netherlands, 1248-1255.

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Kilicoglu H, Ben Abacha A, Mrabet Y, Roberts K, Rodriguez L, Shooshan SE, Demner-Fushman D. Annotating named entities in consumer health questions. LREC,23-28 May 2016, Portorož.

Abstract | pub9349.pdf

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Collins H, Calvo SC, Greenberg K, Forman, NL, Morrison SM. Information Needs in the Precision Medicine Era: How Genetics Home Reference Can Help. Interact J Med Res 2016;5(2):e13 DOI: 10.2196/ijmr.5199

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Kilicoglu H, Fiszman M, Roberts K, Demner-Fushman D. An Ensemble Method for Spelling Correction in Consumer Health Questions. AMIA Annu Symp Proc. 2015 Nov 5;2015:727-36. eCollection 2015.

Abstract | PMID: 26958208 | PMCID: PMC4765565

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Gopal AD, Desai NR, Tse T, Ross JS. Reporting of noninferiority trials in ClinicalTrials.gov and corresponding publications. JAMA. 2015 Mar 17;313(11):1163-5. doi: 10.1001/jama.2015.1697.

Abstract | PMID: 25781447

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Kilicoglu H, Demner-Fushman D. Coreference Resolution for Structured Drug Product Labels Proceedings of BioNLP 2014. pp. 44-53.

Abstract | pub8919.pdf

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Roberts K, Masterton K, Kilicoglu H, Fiszman M, Demner-Fushman D. Annotating Question Decomposition on Complex Medical Questions. LREC 2014.

Abstract | pub7076.pdf

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Roberts K, Masterton K, Fiszman M, Kilicoglu H, Demner-Fushman D. Annotating Question Types for Consumer Health Questions. LREC 2014, BioTxtM workshop.

Abstract | pub7077.pdf

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Roberts K, Kilicoglu H, Fiszman M, Demner-Fushman D. Decomposing consumer health questions. BioNLP 2014.

Abstract | pub7078.pdf

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Hartung DM, Zarin D, Guise JM, McDonagh M, Paynter R, Helfand M. Reporting discrepancies between the ClinicalTrials.gov results database and peer-reviewed publications. Ann Intern Med. 2014 Apr 1;160(7):477-83. doi: 10.7326/M13-0480.

Abstract | PMID: 24687070 | PMCID: PMC4617780

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Kilicoglu H, Fiszman M, Demner-Fushman D. Interpreting Consumer Health Questions: The Role of Anaphora and Ellipsis. Proceedings of BioNLP 2013. Pages 54-62.

Abstract | pub7057.pdf

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Zarin D. Participant-level data and the new frontier in trial transparency [Letter]. N Engl J Med. 2013 Aug 1;369(5):468-9. doi: 10.1056/NEJMe1307268.

Abstract | PMID: 23902488

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Winnenburg R, Rodriguez L, Callaghan F, Sorbello A, Szarfman A, Bodenreider O. Aligning Pharmacologic Classes Between MeSH and ATC. 4th International Conference on Biomedical Ontology · ICBO 2013

Abstract | pub9580.pdf

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Zarin D, Tse T. Trust but verify: trial registration and determining fidelity to the protocol [Letter]. Ann Intern Med. 2013 Jul 2;159(1):65-7. doi: 10.7326/0003-4819-159-1-201307020-00011.

Abstract | PMID: 23817705

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Ross JS, Mocanu M, Lampropulos JF, Tse T, Krumholz HM. Time to publication among completed clinical trials. JAMA Intern Med. 2013 May 13;173(9):825-8. doi: 10.1001/jamainternmed.2013.136.

Abstract | PMID: 23460252 | PMCID: PMC3691813

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Zarin D, Tse T. Clarification about ClinicalTrials.gov [Letter]. IRB. 2013 May-Jun;35(3):19.

Abstract | PMID: 23822048

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Zarin DA, Tse T. Unambiguous identification of obesity trials [Letter]. N Engl J Med. 2013 Feb 7;368(6):580-1. doi: 10.1056/NEJMc1215018.

Abstract | nejmc1215018.pdf | PMID: 23388022 | URL: http://www.nejm.org/doi/full/10.1056/NEJMc1215018

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Williams RJ. Tutorial: ClinicalTrials.gov: Registration and Results Submission Requirements

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Gallagher ME. Improving Software Sustainability: Lessons Learned from Profiles in Science. Archiving. 2013;2013:74-79.

Abstract | a2013001.pdf | PMID: 25267934 | PMCID: PMC4176707

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Gallagher ME, Moffatt C. The Profiles in Science Digital Library: Behind the Scenes. Proc ACM/IEEE Joint Conf Digit Libr. 2012: 433–434. doi: 10.1145/2232817.2232928.

Abstract | pub2012016.pdf | PMCID: PMC3609548

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Morrison SM, Cheh M, Calvo SC, Collins H, Fun J, Greenberg K, Forman-Neall L. Genetics Home Reference, Ten Years In: Where We Are Now [Poster]. American Society of Human Genetics, November 9, 2012, San Francisco, CA.

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Huston M, Williams RJ, Bergeris A, Fun J, Tse T. New style and new content for ClinicalTrials.gov. NLM Tech Bull. 2012 Jul-Aug;(387):e5.

Abstract | URL: http://www.nlm.nih.gov/pubs/techbull/ja12/ja12_clinicaltrials.html

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Tse T, Zarin D, Williams R, Ide N. The role and importance of clinical trial registries and results databases In: Gallin JI, Ognibene FP, eds, Principles and Practice of Clinical Research. 3rd ed. Amsterdam: Academic Press; 2012: 171-81.

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Califf RM, Zarin DA, Kramer JM, Sherman RE, Aberle LH, Tasneem A. Characteristics of clinical trials registered in ClinicalTrials.gov, 2007-2010. JAMA. 2012 May 2;307(17):1838-47. doi: 10.1001/jama.2012.3424.

Abstract | PMID: 22550198 | URL: http://jama.jamanetwork.com/article.aspx?articleid=1150093

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Ross JS, Tse T, Zarin DA, Xu H, Zhou L, Krumholz HM. Publication of NIH funded trials registered in ClinicalTrials.gov: cross sectional analysis. BMJ. 2012 Jan 3;344:d7292. doi: 10.1136/bmj.d7292.

Abstract | bmj.d7292.pdf | PMID: 22214755 | PMCID: PMC3623605

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Ripple AM, Mork JG, Humphreys BL, Knecht LS. A retrospective cohort study of structured abstracts in MEDLINE, 1992-2006. J Med Libr Assoc. 2011 Apr;99(2):160-3. doi: 10.3163/1536-5050.99.2.009.

Abstract | PMID: 21464855 | PMCID: PMC3066587

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Zarin DA, Tse T, Williams RJ, Califf RM, Ide NC. The ClinicalTrials.gov results database--update and key issues. N Engl J Med. 2011 Mar 3;364(9):852-60. doi: 10.1056/NEJMsa1012065.

Abstract | PMID: 21366476 | PMCID: PMC3066456

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Zarin D, Tse T. The effect of funding source on outcome reporting among drug trials [Letter]. Ann Intern Med. 2011 Jan 18;154(2):137-8; author reply 138. doi: 10.7326/0003-4819-154-2-201101180-00020.

Abstract | PMID: 21242372

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Beaudoin DE, Longo N, Logan RA, Jones JP, Mitchell JA. Using information prescriptions to refer patients with metabolic conditions to the Genetics Home Reference website. J Med Libr Assoc. 2011 Jan;99(1):70-6. doi: 10.3163/1536-5050.99.1.012.

Abstract | pub2011004.pdf | PMID: 21243058 | PMCID: PMC3016649

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Willams RJ, Tse T, Harlan WR, Zarin DA. Registration of observational studies: is it time? CMAJ. 2010 Oct 19;182(15):1638-42. doi: 10.1503/cmaj.092252. Epub 2010 Jul 19.

Abstract | PMID: 20643833 | PMCID: PMC2952011

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Williams R, Tse T. ClinicalTrials.gov: A public database of clinical research. Presented at: American Public Health Association 137th Annual Meeting and Expo; November 2009; Philadelphia, PA.

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Williams R, Tse T, Zarin D. Characterizing sponsor-imposed restrictions on disclosing results of clinical trials. Presented at: Sixth International Congress on Peer Review and Biomedical Publication; September 2009; Vancouver, BC, Canada.

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Zarin D, Tse T, Williams R. Frequency and nature of changes in primary outcome measures. Presented at: Sixth International Congress on Peer Review and Biomedical Publication; September 2009; Vancouver, BC, Canada.

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Tse T, Williams RJ, Zarin DA. Reporting "basic results" in ClinicalTrials.gov. Chest. 2009 Jul;136(1):295-303. doi: 10.1378/chest.08-3022.

Abstract | PMID: 19584212 | PMCID: PMC2821287

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Tse T, Williams RJ, Zarin DA. Update on Registration of Clinical Trials in ClinicalTrials.gov. Chest. 2009 Jul;136(1):304-5. doi: 10.1378/chest.09-1219.

Abstract | PMID: 19584213 | PMCID: PMC2821288

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Tse T, Zarin DA. Clinical Trial Registration and Results Reporting: ClinicalTrials.gov and FDAAA FDLI Update. 2009 Jan/Feb;1:18-22

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Zarin DA, Tse T. Moving Towards Transparency of Clinical Trials Science. 2008 Mar 7;319(5868):1340-2.

Abstract | PMID: 18323436 | PMCID: PMC2396952

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Gallagher ME. Keeping the Promises Associated with Your Digital Assets: Is it Possible? In: Archiving 2007 Final Program and Proceedings, pp.146-149, 2007.

Abstract | pub2007007.pdf

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Logan RA, Tse T. A Multidiscipline Conceptual Framework for Consumer Health Informatics Stud Health Technol Inform. 2007;129(Pt 2):1169-73

Abstract | pub2007030.pdf | PMID: 17911899

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Walker FL, Gallagher ME, Thoma GR. PDF File Migration to PDF/A: Technical Considerations. Proc IS&T Archiving 2007. Arlington, Virginia, May 2007; 6-11.

Abstract | pub2007020.pdf

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Zarin DA, Ide NC, Tse T, Harlan WR, West JC, Lindberg DA. Issues in the registration of clinical trials. JAMA. 2007 May 16;297(19):2112-20

Abstract | pub2007017.pdf | PMID: 17507347

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Zarin DA, Keselman A. Registering a Clinical Trial in ClinicalTrials.gov Chest. 2007 Mar;131(3):909-12. Epub 2007 Feb 15

Abstract | pub2007018.pdf | PMID: 17303677

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Fomous C, Mitchell JA, McCray A. Genetics Home Reference: Helping Patients Understand the Role of Genetics in Health and Disease Community Genet. 2006;9(4):274-8

Abstract | pub2006027.pdf

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Siegel ER, Wood FB, Dutcher GA, Ruffin A, Logan RA, Scott J. Assessment of the National Library of Medicine's Health Disparities Plan: A Focus on Native American Outreach J Med Libr Assoc. 2005 Oct;93(4 Suppl):S10-20

Abstract | pub2005070.pdf | PMID: 16239954 | PMCID: PMC1255749

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Wood FB, Siegel ER, Dutcher GA, Ruffin A, Logan RA. The National Library of Medicine's Native American Outreach Portfolio: A Descriptive Overview J Med Libr Assoc. 2005 Oct;93(4 Suppl):S21-34

Abstract | pub2005069.pdf | PMID: 16239955 | PMCID: PMC1255750

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Morrison SM. Web Interface: Genetics Home Reference

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Mitchell JA, Fomous C, Fun J. Challenges and strategies of the Genetics Home Reference J Med Libr Assoc. 2006 Jul;94(3):336-42

Abstract | pub2006026.pdf | PMID: 16888669 | PMCID: PMC1525308

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Gallagher ME, Moffatt C. Surviving Change: The First Step Toward Sustaining Your Digital Library In: J. Trant and D. Bearman (eds.). Museums and the Web 2006: Proceedings, Toronto: Archives & Museum Informatics, published March 1, 2006.

Abstract | pub2006006.pdf

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Graham L, Tse T, Keselman A. Exploring User Navigation during Online Health Information Seeking AMIA Annu Symp Proc. 2006:299-303

Abstract | pub2006065.pdf | PMID: 17238351 | PMCID: PMC1839467

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Bakker TA, Ryce AN, Logan RA, Tse T, Hutcherson LY. A Consumer Health Informatics (CHI) Toolbox: Challenges and Implications AMIA Annu Symp Proc. 2005:21-5

Abstract | pub2005071.pdf | PMID: 16778994 | PMCID: PMC1479846

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Beaudoin DE, Rocha RA, Tse T. Enhancing Access to Patient Education Information: A Pilot Usability Study AMIA Annu Symp Proc. 2005:892

Abstract | pub2005045.pdf | PMID: 16779179 | PMCID: PMC1560886

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Zarin DA, Tse T, Ide NC. Trial Registration at ClinicalTrials.gov between May and October 2005 N Engl J Med. 2005 Dec 29;353(26):2779-87

Abstract | pub2005040.pdf | PMID: 16382064 | PMCID: PMC1568386

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Zeng Q, Kin E, Crowell J, Tse T. A Text Corpora-Based Estimation of the Familiarity of Health Terminology ISBMD, Aveiro, Portugal, 10-11 November 2005:184-92.

Abstract | pub2005041.pdf

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Rosemblat G, Tse T, Gemoets D, Gillen JE, Ide NC. Supporting Access to Consumer Health Information Across Languages Proc ICML-9, September 20-23, 2005; Salvador, Bahia, Brazil.

Abstract | pub2005017.pdf

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Rosemblat G, Tse T, Gemoets D. Adapting A Monolingual Consumer Health System for Cross-Language Information Retrieval Advances in Knowledge Organization, Proceedings of the Eighth International ISKO Conference. 2004 July;9:315-321.

Abstract | pub2004013.pdf

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McCray AT, Gallagher ME. Principles for Digital Library Development Communications of the ACM. 2001 May; 44(5): 48-54.

Abstract | pub2001017.pdf

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Rosemblat G, Gemoets D, Browne AC, Tse T. Machine Translation-Supported Cross Language Information Retrieval for a Consumer Health Resource AMIA Annu Symp Proc. 2003:564-8.

Abstract | pub2003028.pdf | PMID: 14728236 | PMCID: PMC1480254

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McCray AT, Dorfman E, Ripple A, Ide NC, Jha M, Katz DG, Loane RF, Tse T. Usability Issues in Developing a Web-Based Consumer Health Site Proc AMIA Symp. 2000:556-60.

Abstract | pub2000022.pdf | PMID: 11079945 | PMCID: PMC2244083

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McCray AT. Better access to information about clinical trials. Ann Intern Med. 2000 Oct 17;133(8):609-14.

Abstract | pub2000020.pdf | PMID: 11033590

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McCray AT, Ide NC. Design and implementation of a national clinical trials registry. J Am Med Inform Assoc. 2000 May-Jun;7(3):313-23.

Abstract | pub2000019.pdf | PMID: 10833169 | PMCID: PMC61435

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McCray AT, Gallagher ME, Flannick MA. Extending the role of metadata in a digital library system. In: Proceedings of the IEEE Forum on Research and Technology Advances in Digital Libraries, pp. 190-9, 1999.

Abstract | A1999001.pdf

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