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  • Rajaraman S, Candemir S, Xue Z, Alderson P, Thoma G, Antani SK. A Novel Stacked Model Ensemble for Improved TB Detection in Chest Radiographs. In Santosh KC et al. (Eds.). Medical Imaging: Artificial Intelligence, Image Recognition, and Machine Learning Techniques. (pp. 1-26). New York, NY: CRC Press, Taylor & Francis Group.
  • Peters TM, Linte CA, Yaniv Z, Williams J. Mixed and Augmented Reality in Medicine. CRC Press.
  • Yaniv Z, Güler Ö, Gong RH. Cost Effective Simulation; A Mixed Reality Approach. Ch. 10 in Mixed and Augmented Reality in Medicine.
  • McDonald CJ, Maglott D, Abhyankar S, Goodwin RM, Kanduru A, Lu S, Lynch P, Vreeman D, Wang Y, Wood G. US Realm, Chapter 14, Use Case – Clinical Genomics Code Systems. in HL7 Version 2.5.1 Implementation Guide: Lab Results Interface (LRI), DTSU3. HL7 International (Ann Arbor).
  • McDonald CJ, Maglott D, Abhyankar S, Goodwin RM, Kanduru A, Lu S, Lynch P, Vreeman D, Wang Y, Wood G. US Realm, Chapter 5, Use Case – Clinical Genomics Results Reporting in HL7 Version 2.5.1 Implementation Guide: Lab Results Interface (LRI), DTSU3. HL7 International (Ann Arbor).
  • McDonald CJ. Logical Observation Identifiers Names and Codes for In Vitro Diagnostic Test; Guidance for Industry and Food and Drug Administration Staff. Silver Spring, Md: Center for Devices and Radiological Health, FDA, 2018.
  • Yao S, Yu H, AliAkbarpour H, Seetharaman G, Palaniappan K. EpiX: A 3D Measurement Tool for Heritage, Archeology, and Aerial Photogrammetry Heritage Preservation, pp. 47-66, 2018.
  • Vreeman DJ, Abhyankar S, McDonald CJ. Re: Unit conversions between LOINC codes Published June 19, 2017 [Letter]. J Am Med Inform Assoc. 2018 May 1;25(5):614-615. doi: 10.1093/jamia/ocx087.
  • Almubarak H, Guo P, Stanley RJ, Long LR, Antani SK, Thoma GR. Algorithm Enhancements for Improvement of Localized Classification of Uterine Cervical Cancer Digital Histology Images. in Handbook of Research on Emerging Perspectives on Healthcare Information Systems and Informatics,. IGI Global (Hershey, PA).
  • Tang P, McDonald CJ. Computer-Based Patient-Record Systems - Chapter 9. In Shortliffe E, Perreault L, eds. Medical Informatics. New York: springer. 2001:327-358. DOI: 10.1007/978-0-387-21721-5_9.
  • Thamizhvani TR, Lakshmanan S, Rajaraman S. Computer Aided Diagnosis of Skin Tumours from Dermal Images. Hemanth D., Smys S. (eds) Computational Vision and Bio Inspired Computing. Lecture Notes in Computational Vision and Biomechanics, vol 28. Springer, Cham
  • Zweigenbaum P, Demner-Fushman D. Advanced Literature-Mining Tools. In Edwards D, Stajich J, and Hansen D. (Editors). Bioinformatics: Tools and Applications. Springer 2009.
  • McDonald CJ. Top LOINC Codes – Orders and Observations
  • Moallem G, Poostchi M, Yu H, Palaniappan N, Silamut K, Maude RJ, Hossain Md Amir, Jaeger S, Antani SK, Thoma GR. Detecting and Segmenting White Blood Cells in Microscopy Images of Thin Blood Smears [Poster]. Annual Meeting of the American Society of Tropical Medicine & Hygiene (ASTMH), Poster, 2017
  • Raje S, Bhupatiraju R, Abdelrahman H, Busby B. MeSHgram: An Open Source Tool to Visually Browse Co-occurrence of MeSH Terms in PubMed [Poster]. AMIA 2017 Symposium Proceedings.
  • Fallavollita P, Kersten M, Linte CA, Pratt P, Yaniv Z. Guest Editors' Foreword: Special Issue on Augmented Environments for Computer-Assisted Interventions CAI systems enable more precise, safer, and less invasive interventional treatments [Letter]. Healthc Technol Lett. 2017 Oct 27;4(5):149. doi: 10.1049/htl.2017.0078. eCollection 2017 Oct.
  • Bhupatiraju R, Huser V, Fung K. Phenotype modelling tools utilizing standardized EHR data in a Common Data Model format [Poster]. NIH Research Festival 2017.
  • Moallem G, Jaeger S, Poostchi M, Palaniappan N, Yu H, Silamut K, Maude RJ, Antani SK, Thoma GR. White Blood Cell Detection and Segmentation in Microscopy Images of Thin Blood Smears [Poster]. NIH Research Festival, Poster, 2017
  • Abhyankar S, Vreeman DJ, Westra BL, Delaney CW. Comments on the Use of LOINC and SNOMED CT for Representing Nursing Data [Letter]. Int J Nurs Knowl. 2017 Aug 30. doi: 10.1111/2047-3095.12183. [Epub ahead of print]
  • Jaeger S. Malaria Datasets
  • Vreeman DJ, Abhyankar S, McDonald CJ. Unit conversions between LOINC codes Published June 19, 2017 [Letter]. Journal of the American Medical Informatics Association, 1–3. http://doi.org/10.1093/jamia/ocx087.
  • McDonald CJ, Maglott D, Abhyankar S, Goodwin R, Kanduru A, Lu S, Lynch P, Vreeman D, Wang Y, Wood G. HL7 Version 2.5.1 Implementation Guide: Lab Results Interface (LRI), Release 1, STU Release 4. US Realm, Chapter 5, Clinical Genomics Results Reporting. Published for May 2017 Ballot.
  • Ash J, Sittig D. Everything Electronic Medical Records: Systems, Standards and Studies Conversations with Medical Informatics Pioneers: An oral history project.
  • Jaeger S. Chest X-ray Screening System: Segmentation Module – v3
  • Collins H, Calvo SC, Greenberg K, Forman NL, Morrison SM. Using Genetics Home Reference to Reinforce Patient Education [Poster]. American College of Medical Genetics Annual Meeting, Phoenix, AZ, March 21-25, 2017.
  • Borovikov E, Vajda S. FaceMatch: real-world face image retrieval. In: Santosh K., Hangarge M., Bevilacqua V., Negi A. (eds) Recent Trends in Image Processing and Pattern Recognition. RTIP2R 2016. Communications in Computer and Information Science, vol 709. Springer, Singapore. 405-419.
  • Greenberg K, Calvo SC, Collins H, Foreman NL, Morrison SM. Genetics Home Reference: A point of care resource in the genomic medicine era [Poster]. American Society of Human Genetics Annual Meeting, Vancouver, British Columbia, Canada, November 18-22, 2016.
  • Narum R, Zou J, Antani SK. Semi-Automated Ground-Truth Data Collection and Annotation for Journal Figure Analysis [Poster]. 2016 NIH Research Festival
  • Wang Y, Lynch P, Kanduru A, Hook J, Mericle L, Ludet C, Vreeman D, McDonald CJ. LHC-Forms and Related Widgets for Capturing and Tuning Health Data [Poster] AMIA Annual Symposium, Chicago IL
  • Jaeger S, Silamut K, Yu H, Poostchi Mohammadabadi M, Ersoy I, Powell A, Liang Z, Hossain M, Antani SK, Palaniappan K, Maude R, Thoma GR. Reducing the Diagnostic Burden of Malaria Using Microscopy Image Analysis and Machine Learning in the Field [Poster]. Annual Meeting of the American Society of Tropical Medicine & Hygiene (ASTMH), Atlanta, USA, 2016.
  • Rodriguez L, Morrison SM, Greenberg K, Demner-Fushman D. Towards Automatic Discovery of Genes Related to Human Placenta [Poster]. Poster Fall AMIA 2016.
  • De Herrera A, Long LR, Antani SK. Content–based fMRI activation maps retrieval [Poster]. BIH 2016: Brain Informatics and Health pp 173-180, October 13-16, 2016.
  • Demner-Fushman D, Elhadad N. Aspiring to Unintended Consequences of Natural Language Processing: A Review of Recent Developments in Clinical and Consumer-Generated Text Processing. IMIA Yearbook of Medical Informatics 2016.
  • Borovikov E, Vajda S, Lingappa G, Bonifant MC. Parallel Computing in Face Image Retrieval: Practical Approach to the Real-World Image Search. Multi-Core Computer Vision and Image Processing for Intelligent Applications. IGI Global, 2017. 155-189. Web. 12 Sep. 2016. doi:10.4018/978-1-5225-0889-2.ch006
  • Borovikov E, Bonifant MC, Lingappa G, Gill MJ, Thoma GR. FaceMatch: a visual search system for family reunification during disasters [Poster]. NIH Research Festival, September 2016
  • James E. McDonald, MD, Ron Fishman, MD (Editor), McDonald CJ (Editor). FOCUS Eye Care in Haiti and Nigeria from 1961-1996 E-book (1st edition 2010, 2nd edition 2014).
  • Demner-Fushman D, Kilicoglu H. Dataset: CHQA Named Entity Dataset
  • Kilicoglu H. Software: Bio-SCoRes
  • Kilicoglu H. Dataset: Sortal Anaphora Dataset
  • Kilicoglu H. Dataset: Structured Drug Product Label (SPL) Coreference Dataset
  • Lu C, Tormey D, McDreedy L, Browne AC. Multiword frequency analysis based on MEDLINE N - gram set [Poster]. AMIA 2016 Annual Symposium, Chicago, IL, November 12-16, 2016.
  • Lu C, Tormey D, McDreedy L, Browne AC. Generating SD-Rules in the SPECISLIST Lexical Tools - Optimization for suffix derivation rule set [Poster]. BIOSTEC 2016), Vol(5): HEALTHINF, Rome, Italy, February 21-23, 2016, p. 353-358 (9th International Conference on Health Informatics, HEALTHINF/BIOSTEC, 2016 Best Poster Award
  • Yaniv Z. Registration for Orthopaedic Interventions. Chapter 3 in: Zheng G, Li S, editors. Computational Radiology for Orthopaedic Interventions: Lecture Notes in Computational Vision and Biomechanics. Springer International Publishing; c2016. p. 41-70.
  • Demner-Fushman D, Roberts K. Dataset: Question Decomposition Data
  • Demner-Fushman D, Roberts K. Dataset: Question Type Data
  • Lu C, Tormey D, MCreedy L, Browne AC. Generating the MEDLINE N-Gram Set [Poster]. AMIA 2015 Annual Symposium, San Francisco, CA, November 14-18, 2015, p. 1569.
  • Kayaalp M, Browne AC, Dodd ZA, Sagan P, McDonald CJ. An Easy-to-Use Clinical Text De-identification Tool for Clinical Scientists: NLM Scrubber [Poster]. Proceedings of the Annual American Medical Informatics Association Fall Symposium: 1522.
  • Sorbello A, Ripple AM, Bodenreider O. A pilot study to support prospective detection of emerging adverse drug events [Poster]. AMIA Annu Symp Proc 2015:1699.
  • Szolovits P, Aberdeen J, Meystre S, Kayaalp M. Panel on: State of the Art of Clinical Narrative Report De-Identification and Its Future [Poster]. Proceedings of the Annual American Medical Informatics Association Fall Symposium: 240–242.
  • Folio, L, Sigelman, J, Wang, Y, Lu, P, Antani SK, Jaeger S. Automatic Identification and Classification of Tuberculosis Findings on Chest Radiographs for Global Surveillance Programs [Abstract]. Annual Meeting of the American Roentgen Ray Society (ARRS)
  • Ruiz A, Allette K, Francis D, Lamping E, Jaeger S, Folio L, Apolo A. Patterns of soft tissue metastasis in patients with urothelial carcinoma using tumor volume heatmaps [Poster]. NIH Summer Research Program Poster Day, Aug 6, 2015
  • Yaniv Z, Linte CA. Applications of Augmented Reality in the Operating Room. Chapter 19 in Fundamentals of Wearable Computers and Augmented Reality, 2nd ed. CRC Press, 2015.
  • Detmer DE, Ash JS (Interviewer and Editor), Sittig DF (Interviewer and Editor), Goodwin RM (Editor). Fostering Health Policy and the Biomedical Informatics Profession: 2006 Interview of Don Detmer. Conversations with Medical Informatics Pioneers: An oral history project.
  • Matheson NW, Ash JS (Interviewer and Editor), Sittig DF (Interviewer and Editor), Goodwin RM (Editor). The Woman Behind the NLM’s Integrated Advanced Information Management Systems (IAIMS) Initiative: 2005 Interview of Nina Matheson. Conversations with Medical Informatics Pioneers: An oral history project.
  • Cho D, Mork JG, Aronson A, Demner-Fushman D, Schmidt S, Ozga D, Pash J, Kilbourne J. MeSH on demand: an easy way to identify relevant MeSH terms and related articles from text [Poster]. National Cancer Institute (NCI) Symposium "RNA Biology 2015".
  • Barnett GO, Ash JS (Interviewer and Editor), Sittig DF (Interviewer and Editor), Goodwin RM (Editor). From "Farm Boy" to Director of the Laboratory of Computer Science: 2004 Interview of G. Octo Barnett Conversations with Medical Informatics Pioneers: An oral history project.
  • Warner HR, Sittig DF (Interviewer and Editor), Ash JS (Editor), Goodwin RM (Editor). Founder of the HELP System and the Utah Medical Informatics Program: 2005 Interview of Homer R. Warner, Sr. Conversations with Medical Informatics Pioneers: An oral history project.
  • Ash JS (Interviewer and Editor), Sittig DF (Interviewer and Editor), Goodwin RM (Editor). Introduction Conversations with Medical Informatics Pioneers: An oral history project.
  • Lindberg, DAB, Ash JS (Interviewer and Editor), Sittig DF (Interviewer and Editor), Goodwin RM (Editor). At the helm of the world's largest biomedical library: 2005 Interviews with Donald A.B. Lindberg, MD Conversations with Medical Informatics Pioneers: An oral history project.
  • Amini S, Kilicoglu H, Hooft L, ter Riet G. Are we expressing uncertainty of our claims enough? Towards automatic detection of overstatement of claims [Poster]. 2015. World Conference on Research Integrity (WCRI).
  • Cohen KB, Demner-Fushman D. Biomedical Natural Language Processing John Benjamins Publishing Company, 2014. DOI: 10.1075/nlp.11
  • Kayaalp M, Dodd Z, Browne AC, Sagan, P, McDonald CJ. Software: NLM-Scrubber
  • Xue Z, Bryant B, Long LR, Sari-Sarraf H, Thoma GR, Wachtel M. A Client-Server Tool for Automatic Fast GPU-based Detection of Squamous Epithelium Tissue Regions in Histology Images [Poster]. RSNA 2014. Chicago, USA, Nov 30-Dec 5, 2014
  • Antani SK. Tuberculosis Chest X-ray Image Data Sets
  • Roberts K, Cahan A, Demner-Fushman D. Error Propagation in EHRs via Copy/Paste: An Analysis of Relative Dates [Poster]. Proceedings of the American Medical Informatics Association Fall Symposium (AMIA), Washington, D.C., Nov 15-19, 2014.
  • Lu C, Tormey D, McDreedy L, Browne AC. Using element words to generate (multi)words for the SPECIALIST Lexicon [Poster]. AMIA 2014 Annual Symposium, Washington, DC, November 15-19, 2014, p. 1499. Poster
  • Rodriguez L, Huser V, Bodenreider O, Cimino J. Automatic coding of Free-Text Medication Data recorded by Research Coordinators [Poster]. AMIA Annu Symp Proc 2014:1565.
  • Gordon, E, Ersoy, I, Jaeger S, Waisberg, M, Pena, M, Thoma GR, Antani SK, Pierce, S, Palaniappan, K. Retinal Microcirculation Dynamics During an Active Malarial Infection [Poster]. Annual Meeting of the American Society of Tropical Medicine and Hygiene (ASTMH), 2014.
  • Khatipov E, Madden M, Chiang P, Chuang P, Nguyen D, D'Souza I, Winnenburg R, Bodenreider O, Skapik J, McClure R, Emrick S. Creating, maintaining and publishing value sets in the VSAC [Poster]. AMIA Annu Symp Proc, 2014: p. 1459.
  • Nguyen T, Peters L, Bodenreider O. RxClass - Navigating between drug classes and RxNorm drugs [Poster]. AMIA Annu Symp Proc, 2014: p. 1529.
  • Bodenreider O, Peters L, Nguyen T. RxClass – Navigating between Drug Classes and RxNorm Drugs (Demo). Prc. ICBO 2014
  • Richesson RL, Fung K, Bodenreider O. Coverage of rare disease names in cinical coding systems and ontologies and implications for electronic health records-based research [Poster]. Proc 5th Int'l Conf Conference on Biomedical Ontology.
  • Kwon J, Burke DJ, Wang A, Boudreau HE, Lekstrom KJ, Korzeniowska A, Kim YS, Li L, Bunyak F, Jaeger S, Palaniappan K, Ambruso DR, Jackson SH, Leto TL. Peroxiredoxin 6 (Prdx6) supports NADPH oxidase1 (Nox1)-based reactive oxygen species generation and cell migration: collaboration of oxidant generating and scavenging systems [Poster]. NIH Research Festival 2014.
  • Collen MF, Sittig DF (Interviewer and Editor), Ash JS (Editor), Goodwin RM (Editor). Engineering Computerized Multiphasic Health Screening: 2005 Interview of Morris F. Collen, MD. Conversations with Medical Informatics Pioneers: An oral history project.
  • Linte CA, Yaniv Z, Fallavollita P, Abolmaesumi P, Holmes DR III, editors. Augmented Environments for Computer-Assisted Interventions 2014: 9th International AE-CAI Workshop. Held in conjunction with MICCAI 2014. 2014 Sep 14; Boston. Lecture Notes in Computer Science, vol. 8678. Springer; 2014. 149 pages.
  • Yaniv Z, Holmes DR III, editors. Medical Imaging 2014: Image-Guided Procedures, Robotic Interventions, and Modeling. Proceedings of conference held 2014 Feb 15-20; San Diego. Proc. SPIE 9036; 2014 Mar 12. 764 pages. ISBN: 9780819498298.
  • Guler, O, Yaniv Z. A tutorial on image guided therapy. Chapter 11 in: Birkfellner W, editor. Applied Medical Image Processing, Second Edition: A Basic Course. London: CRC Press; 2014. ISBN: 9781466555570.
  • McDonald CJ, Tang PC, Hripcsak G. Electronic Health Record Systems. . In: Shortliffe EH, Cimino JJ, editors. Biomedical Informatics: Computer Applications in Healthcare and Biomedicine 4th ED [Internet]. London: Springer London; 2014. p. 391–421. Available from: http://link.springer.com/10.1007/978-1-4471-4474-8.
  • Mork JG, Demner-Fushman D, Schmidt SC, Aronson A. Vocabulary Density Method for Personalized Indexing of MEDLINE Journals [Poster]. 2014 AMIA Symposium.
  • Ripple AM, Mork JG, Schmidt SC, Thomson H, Knecht LS. Performance Comparison of MEDLINE Structured Abstract to Unstructured Abstracts [Poster]. 2014 NIH Research Festival.
  • Winnenburg R, Bodenreider O. Coverage of human phenotypes in SNOMED CT [Poster]. SNOMED CT Implementation Showcase, 2014.
  • Van Der Volgen J, Harris BR, Demner-Fushman D. Analysis of Consumer Health Questions for Development of Question-Answering Technology [Poster]. Proceedings of One HEALTH: Information in an Interdependent World, the 2013 Annual Meeting and Exhibition of the Medical Library Association (MLA), 2013.
  • Bodenreider O. Disease Ontologies In: Dubitzky W, Wolkenhauer O, Cho K-H, Yokota H, editors. Encyclopedia of Systems Biology: Springer; 2013. p. 578-581.
  • Lu C, Tormey D, McDreedy L, Browne AC. Implementing comprehensive derivational features in Llexical tools using a systematical approach [Poster]. AMIA 2013 Annual Symposium, Washington, DC, November 16-20, 2013, p. 904
  • Borovikov E, Vajda S, Lingappa G, Candemir S, Antani SK, Gill MJ, Thoma GR. FaceMatch: visual search of missing persons during a disaster event [Poster]. NIH Intramural Research Festival, Bethesda MD, November 6-8, 2013.
  • Karargyris A, Candemir S, Jaeger S, Xue Z, Antani SK, Thoma GR. A Combined Approach for Lung Boundary Segmentation of Chest X-Ray Images [Poster]. NIH Intramural Research Festival, Bethesda MD, November 6-8, 2013.
  • Karargyris A, Folio L, Siegelman J, Callaghan FM, Candemir S, Xue Z, Lu P-X, Wang Y, Antani SK, Thoma GR, Jaeger S. Comparing the Performance of Man and Machine for TB Screening in Chest Radiographs [Poster]. NIH Intramural Research Festival, Bethesda MD, November 6-8, 2013.
  • Rahman MM, Antani SK, Demner-Fushman D, Thoma GR. An Interactive Region-Of-interest (ROI)- Based Image Retrieval Approach of Biomedical Articles in a Local Concept- Based Feature Space [Poster]. NIH Intramural Research Festival, Bethesda MD, November 6-8, 2013.
  • Xue Z, Jaeger S, Karargyris A, Candemir S, Antani SK, Long LR, Thoma GR, McDonald CJ. A System for Automated Screening for Tuberculosis using Digital Chest X-rays for Resources-Constrained Regions [Poster]. NIH Intramural Research Festival, Bethesda MD, November 6-8, 2013.
  • You D, Antani SK, Demner-Fushman D, Thoma GR. Does figure-text improve biomedical image retrieval [Poster]. NIH Intramural Research Festival, Bethesda MD, November 6-8, 2013.
  • Peters L, Nguyen T, Bodenreider O. Displaying drug classes in RxNav [Poster]. AMIA Annu Symp Proc, 2013: p. 1134.
  • Gordon E, Waisberg M, Ersoy I, Pena M, Jaeger S, Pierce S. The eye as a window to investigate the CNS microvasculature during a dynamic malaria infection (Abstract). Third Annual Seminar on Molecular Imaging of Infectious Diseases, September 23, 2013.
  • Zarin D. Participant-level data and the new frontier in trial transparency [Letter]. N Engl J Med. 2013 Aug 1;369(5):468-9. doi: 10.1056/NEJMe1307268.
  • Zarin D, Tse T. Trust but verify: trial registration and determining fidelity to the protocol [Letter]. Ann Intern Med. 2013 Jul 2;159(1):65-7. doi: 10.7326/0003-4819-159-1-201307020-00011.
  • Zarin D, Tse T. Clarification about ClinicalTrials.gov [Letter]. IRB. 2013 May-Jun;35(3):19.
  • Abhyankar S, McDonald CJ. Overweight, obesity, and all-cause mortality [Letter]. JAMA. 2013 Apr 24;309(16):1680-1. doi: 10.1001/jama.2013.3092.
  • Fontelo P. Web Interface: The Bottom Line.
  • McDonald CJ, Vreeman DJ, Abhyankar S. Comment on "time to integrate clinical and research informatics" [Letter]. Sci Transl Med. 2013 Apr 3;5(179):179le1. doi: 10.1126/scitranslmed.3005700.
  • Cimino JJ. Tutorial: meeting data access and reporting requirements with the NIH’s Biomedical Translational Research Information System (BTRIS).
  • Bryant B, Sari-Sarraf H, Wachtel M, Long LR, Antani SK. Fast GPU-based segmentation of H&E stained squamous epithelium from multi-gigapixel tiled virtual slides [Poster]. Proc. SPIE 8676, Medical Imaging 2013: Digital Pathology, 86760X (March 29, 2013); doi:10.1117/12.2007800
  • Zarin DA, Tse T. Unambiguous identification of obesity trials [Letter]. N Engl J Med. 2013 Feb 7;368(6):580-1. doi: 10.1056/NEJMc1215018.
  • Fung K. Dataset: SNOMED CT to ICD-10 Cross Map
  • Williams RJ. Tutorial: ClinicalTrials.gov: Registration and Results Submission Requirements
  • Balkanyi L, Schulz S, Cornet R, Bodenreider O. Medical concept representation: the years beyond 2000 [Poster]. Stud Health Technol Inform. 2013;192:1011.
  • Bodenreider O, Nguyen D, Chiang P, Chuang P, Madden M, Winnenburg R, McClure R, Emrick S, D'Souza I. The NLM value set authority center (Poster). Stud Health Technol Inform. 2013;192:1224.
  • Jimeno Yepes A, Mork JG, Aronson A. Using the argumentative structure of scientific literature to improve information access [Poster]. BioNLP 2013.
  • Locatis CN, Conde JG, Bhagwat MA. A Hands-on Distance Learning Strategy to Increase Access to Bioinformatics Training [Poster]. Research Centers in Minority Institutions (RCMI): 13th RCMI International Symposium on Health Disparities; 2012 Dec 9-13; San Juan, Puerto Rico.
  • Morrison SM, Cheh M, Calvo SC, Collins H, Fun J, Greenberg K, Forman-Neall L. Genetics Home Reference, Ten Years In: Where We Are Now [Poster]. American Society of Human Genetics, November 9, 2012, San Francisco, CA.
  • Fontelo P, Liu F. An Analysis of "PubMed for Handhelds" Server Utilization [Poster]. AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2012 Nov 3-7; Chicago. p. 1736.
  • Gavino A, Marcelo A, Isip-Tan IT, Apostol-Nicodemus L, Mesa-Gaerlan FJ, Firaza PN, Faustorilla JF Jr., Fontelo P. Email2MEDLINE Use by Rural Health Physicians in Remote Areas of the Philippines [Poster]. AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2012 Nov 3-7; Chicago. p. 1746.
  • Liu F, Fontelo P, Gavino A. ClinicalTrials and DailyMed Links from Translational Science Search [Poster]. AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2012 Nov 3-7; Chicago. p. 1841.
  • Marcelo A, Isip-Tan IT, Apostol-Nicodemus L, Mesa-Gaerlan FJ, Firaza PN, Faustorilla JF Jr., Gavino A, Fontelo P. Use of Tablet Computers at the Point-of-Care: A Case Study from the Philippines [Poster]. AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2012 Nov 3-7; Chicago. p. 1853.
  • Sheets L, Gavino A, Liu F, Fontelo P. Usability of Selected Databases for Low-Resource Clinical Decision Support [Poster]. AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2012 Nov 3-7; Chicago. p. 1939.
  • Callaghan FM. Tutorial: Biostatistics 101: introduction to power and sample size.
  • Lu C, Browne AC. Development of sub-term mapping tools (STMT) [Poster]. AMIA 2012 Annual Symposium, Chicago, IL, November 3-7, 2012, p. 1845 (AMIA, 2012 Distinguished Poster Award) Poster.
  • Fung KW, Bodenreider O. Knowledge representation and ontologies. Richesson RL, Andrews JE (Eds.). Clinical Research Informatics, Health Informatics, DOI 10.1007/978-1-84882-448-5_14, Springer-Verlag London Limited Publishing 2012.
  • Peters L, Nguyen T, Bodenreider O. RxBatch – Batch operations for RxNorm and NDF-RT APIs (Poster). AMIA Annu Symp Proc, 2012: p. 1897.
  • Bodenreider O. API: Prescribable
  • Abhyankar S, Demner-Fushman D, Callaghan F, Leishear K, McDonald CJ. MIMIC-II: a database of 30,000+ patients for ICU research. NIH Intramural Research Festival, Bethesda MD, October 9-12, 2012.
  • Jaeger S, Karargyris A, Antani SK, Thoma GR. Automatic Screening For Lung Diseases In Chest Radiographs: a Global Health Initiative [Poster].. NIH Research Festival. October 2012.
  • Borovikov E. FaceMatch: visual search for pictures of missing persons during a disaster event. NIH Research Festival. October 2012.
  • Huser V, Taft L, Cimino J. Suitability of LOINC document ontology as a reference terminology for clinical document types: a case report of a research-oriented EHR. NIH Poster Day 2012.
  • Tse T, Zarin D, Williams R, Ide N. The role and importance of clinical trial registries and results databases In: Gallin JI, Ognibene FP, eds, Principles and Practice of Clinical Research. 3rd ed. Amsterdam: Academic Press; 2012: 171-81.
  • Fung K. Dataset: SNOMED CT to ICD-10-CM Map
  • McDonald CJ, Vreeman D, Goodwin RM. Dataset: LOINC Top 2000+ Lab Observations and Mapper's Guide
  • Bodenreider O. Web Interface: RxMix
  • McDonald CJ, Tierney WM. The effect of electronic health records on test ordering [Letter}. Health Aff (Millwood). 2012 Jun;31(6):1365; author reply 1366. doi: 10.1377/hlthaff.2012.0471.
  • Fung KW. Dataset: ICD-9-CM to SNOMED CT Map
  • Zarin D. Factual Errors about ClinicalTrials.gov and other federal mandates in special report by Shuster [Letter]. Clin Transl Sci. 2012 Apr;5(2):217; author reply 217. doi: 10.1111/j.1752-8062.2012.00410.x.
  • Fung KW. Web Interface: I-Magic SNOMED-CT to ICD-10-CM code mapping tool.
  • McDonald CJ, McDonald MH. Electronic medical records and preserving primary care physicians' time: comment on "electronic health record-based messages to primary care providers" [Letter]. Arch Intern Med. 2012 Feb 13;172(3):285-7. doi: 10.1001/archinternmed.2011.1678.
  • Borovikov E, Zavorin I. A multi-stage document processing approach To Arabic text recognition. Guide to OCR for Arabic Scripts. 2012:55-78.
  • Jaeger S. A geomedical approach to Chinese medicine: The origin of the yin-yang symbol. Recent Advances in Theories and Practice of Chinese Medicine, Haixue Kuang (Ed.), ISBN: 978-953-307-903-5, InTech, 2012.
  • Cairelli M, Rindflesch TC. Identifying Potential Biomarkers for Mild Traumatic Brain Injury by Mining Semantic Relations from MEDLINE Citations [Poster[. 2011 Trauma Spectrum Conference, Bethesda, MD, December 9, 2011.
  • Abhyankar S, Goodwin RM, Zuckerman A, McDonald CJ. Dataset: newborn screening results annotated example HL7 electronic message guidance (v 5.2).
  • Fontelo P. Can journal abstracts alone be used for clinical decision making [Letter]? BMJ. 2011 Nov 2.
  • Abhyankar S, Goodwin RM, Zuckerman AE, McDonald CJ. Dataset: Newborn screening LOINC panel.
  • Peters L, Nguyen T, Bodenreider O. An application programming interface for NDF-RT AMIA Annu Symp Proc 2011:1922
  • Demner-Fushman D, Abhyankar S, Callaghan FM, McDonald CJ. Extracting sources of admission and discharge destinations from discharge summaries [Poster]. AMIA 2011 Fall Symposium.
  • Gavino AI, Ho BLC, Wee PAA, Marcelo AB, Fontelo P. Information-seeking practices of medical professionals and students in low and middle income countries. AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2011 Oct 22-26; Washington DC. p. 1780.
  • Liu F, Fontelo P. Using Social Networking Resources to Search MEDLINE/PubMed, a Practice Guidelines Database and Journal Club. AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2011 Oct 22-26; Washington DC. p. 1864.
  • Sheets L, Gavino A, Fontelo P. Language Fluency and Other Predictors of International Use of PubMed and MedlinePlus. AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2011 Oct 22-26; Washington DC. p. 1779.
  • Abhyankar S, Goodwin RM, Zuckerman AE, McDonald CJ. Dataset: newborn screening LOINC codes (AHIC panel).
  • Callaghan F, Demner-Fushman D, Abhyankar S, McDonald CJ. Addressing errors in a retrospective observational ICU database [poster]. AMIA 2011 Fall Symposium.
  • Altemus AR. Mobile App: Native Voices: Native Peoples' Concepts of Health and Illness
  • McDonald CJ, Abhyankar S, Taft L. Dataset: common units of measure - subset of the Unified Code for Units of Measure.
  • Bodenreider O, Peters L, Nguyen T. RxNav: Browser and Application Programming Interfaces for Drug Information Sources [Abstract]. AMIA Annu Symp Proc 2011:2129
  • Rance B, Demner-Fushman D, Rindflesch TC, Bodenreider O. Exploring Automatic Approaches to Extracting Pharmacogenomic Information from the Biomedical Literature Proceedings of the 2011 PSB Workshop on Mining the Pharmacogenomics Literature 2011
  • Schuette P, Callaghan F, Rochester CG. Confidence intervals for binomial proportions with applications to product safety signaling in drug exposure registries [Abstract]. Proc 2011 Joint Statistical Meetings. 2011 July 30.
  • Long LR, Antani SK, Thoma GR, Deserno TM. Content-based Image Retrieval For Advancing Medical Diagnostics, Treatment, and Education New Technologies for Advancing Healthcare and Clinical Practices. June 2011:1-17.
  • Abhyankar S, Callaghan FM, Demner-Fushman D, McDonald CJ. Using informatics tools to study obesity and outcomes after critical illness. NLM Informatics Training Conference 2011, National Institutes of Health (NIH) Campus, Natcher Conference Center, Bethesda, MD, June 28-30, 2011.
  • McDonald C, Vreeman D, Goodwin RM. Dataset: LOINC Top 300+ Lab Orders
  • Simpson MS, Demner-Fushman D. Biomedical Text Mining: A Survey of Recent Progress. In Charu C. Aggarwal and ChengXiang Zhai, Editors. Mining Text Data. (Springer) 2011.
  • Locatis CN, Williamson D, Gould-Kabler C, Zone-Smith L, Detzler I, Roberson J, Maisiak R, Ackerman MJ. In-Person, Video, and Telephonic Medical Interpretation. American Telemedicine Association 16th Annual International Meeting; 2011 May 1-3; Tampa, Florida.
  • Fung KW. Dataset: Nursing Problem List Subset of SNOMED CT
  • Gill MJ, Pearson G, Neve L, Miernicki G, Antani SK, Thoma GR. Mobile App: ReUnite iOS app
  • Zarin D, Tse T. The effect of funding source on outcome reporting among drug trials [Letter]. Ann Intern Med. 2011 Jan 18;154(2):137-8; author reply 138. doi: 10.7326/0003-4819-154-2-201101180-00020.
  • Jao CS, Fung KW, Demner-Fushman D. Identifying indications for drugs in drug package inserts. AMIA Annual Symposium Proceedings 2010. November 2010
  • Banez RJ, Fontelo P, Marcelo AB, Liu F. QRefer: Using 2D-Barcode Technology for Patient Referral Systems. AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2010 Nov 13-17; Washington DC. p. 975.
  • Cardenas I, Marcelo AB, Fontelo P. Development of a health informatics community-generated, open-source controlled medical vocabulary. AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2010 Nov 13-17; Washington DC. p. 998.
  • Fontelo P, Liu F, Banez RJ. Mobile Devices, Smartphones and ‘PubMed for Handhelds’. AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2010 Nov 13-17; Washington DC. p. 1044.
  • Kovarik C, Fontelo P, Liu F, Armstrong K, Littman-Quinn R, Banez R, Seymour A, Shih T, Mazhani L. txt2MEDLINE and SMS Practice Guidelines for Clinicians in Botswana. AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2010 Nov 13-17; Washington DC. p. 1043.
  • Liu F, Fontelo P. Automatic translations of MEDLINE abstracts using Google Translate. AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2010 Nov 13-17; Washington DC. p. 1148.
  • Olson R, James E, Fontelo P. Information access trends among clinicians at a community hospital in northeast Georgia. AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2010 Nov 13-17; Washington DC. p. 975.
  • Fontelo P, Liu F. Are Consensus MEDLINE Abstracts Useful For Guiding Clinical Decisions? Evidence 2010 -- Transforming Healthcare; 2010 Nov 1-2; BMA House, London.
  • Fung K, Scichilone R, Giannangelo K. Benefits and Use Cases of a SNOMED CT to ICD-10 Map. AMIA Annu Symp Proc 2010: 1049.
  • Mork JG, Aronson AR. The Medical Text Indexer (MTI) system for indexing biomedical literature. book chapter submitted to monograph Indexing Specialities: Medicine. Edited by L. Pilar Wyman. Medford, NJ: Information Today, Inc., in association with the American Society of Indexers, Phoenix, AZ. 2010.
  • Zhu VJ, Fung K. Extraction and Comparison of Drug Class Information From Standard Terminologies. AMIA Annu Symp Proc. November 2010:1327.
  • Fung KW. API: RxTerms
  • Fung KW. Dataset: SNOMED CT route of administration subset.
  • Neve L, Long LR, Antani SK. Software: Boundary Marking Tool 2 (BMT2)
  • Williams R, Tse T. ClinicalTrials.gov: A public database of clinical research. Presented at: American Public Health Association 137th Annual Meeting and Expo; November 2009; Philadelphia, PA.
  • Ducut E, Liu F, Quion N, Fontelo P. TB-SMS: A Short Messaging Service (SMS) Medication Reminder Application for DOTS. AMIA Annu Symp Proc; 2009 Nov 14-18; San Francisco. p. 827.
  • Encinas MA, Ducut E, Liu F, Avila JM, Diwa M, Fontelo P. Development of a Virtual Slide Library in a Developing Country. AMIA Annu Symp Proc; 2009 Nov 14-18; San Francisco. p. 836.
  • Fontelo P, Liu F. Consensus TBL Summaries for Clinical Decision-making. AMIA Annu Symp Proc; 2009 Nov 14-18; San Francisco. p. 846.
  • Fontelo P, Liu F, Cravedi K. Found in Translation: Tracking and Tagging Translational Research. AMIA Annu Symp Proc. 2009 Nov 14-18; San Francisco. p. 823.
  • Kasiviswanathan K, Fontelo P. Connecting the OLPC: a Model for Developing Countries. AMIA Annu Symp Proc; 2009 Nov 14-18; San Francisco. p. 904.
  • Liu F, Fontelo P. Infobuttons Linked to Indivo, a Patient Controlled Health Record. AMIA Annu Symp Proc; 2009 Nov 14-18; San Francisco. p. 940.
  • Lu C, Humphrey SM, Rogers W, Browne AC. Development of a semantic type based WSD tool [Abstract]. AMIA Annu Symp Proc 2009:943.
  • Sneiderman C, Rosemblat G, Bray B, Fiszman M, Rindflesch TC. Matching Clinical Observations in Published Cardiology Case Reports to LOINC [Abstract]. AMIA Annu Symp Proc; 2009 Nov 14-18; San Francisco. p. 1036.
  • Fung K, Berglund D, Scichilone R, Brear H, Giannangelo K. SNOMED CT to ICD-10 map development process diagram. Meeting of the WHO Collaborating Centers for the Family of International Classifications. October 2009.
  • Yoo TS, Silver D, Correa C, Chen D, Moran A. Volumetric Bodies - the Exhibition. IEEE VisWeek 2009 Interactive Demo & Art Exhibit; 2009 Oct 12-16; Atlantic City, New Jersey.
  • Névéol A, Mork JG, Aronson AR. Comment on 'MeSH-up: effective MeSH text classification for improved document retrieval'. Bioinformatics. 2009 Oct 15;25(20):2770-1; author reply 2772. doi: 10.1093/bioinformatics/btp483. Epub 2009 Aug 11.
  • Lowekamp B, Chen D, Santoroski J, Yaniv Z, Yoo TS. Software: SimpleITK.
  • Williams R, Tse T, Zarin D. Characterizing sponsor-imposed restrictions on disclosing results of clinical trials. Presented at: Sixth International Congress on Peer Review and Biomedical Publication; September 2009; Vancouver, BC, Canada.
  • Fung KW. Dataset: CORE problem list of SNOMED CT.
  • McDonald CJ, Hill G. IUPAC Silver Book- Compendium of Terminology and Nomenclature of Properties in Clinical Laboratory Sciences - Chapter 8 - Kinds-of-Quantity of Dimension One. SI Unit 1. Royal Society of Chemistry; 2009. doi:10.1039/978178262245.1-00075.
  • Hristovski D, Kastrin A, Peterlin B, Rindflesch TC. Combining Semantic Relations and DNA Microarray Data for Novel Hypotheses Generation Lecture Notes in Bioinformatics. Springer
  • Zweigenbaum P, Demner-Fushman D. Bioinformatics: Tools and Applications. Springer 2009.
  • Demner-Fushman D, Antani SK, Simpson M. Web Interface: Open-I
  • Bodenreider O. Biomedical Ontologies in Action: Role in Knowledge Management, Data Integration and Decision Support. Geissbuhler A, Kulikowski C, editors. IMIA Yearbook of Medical Informatics 2008. Methods Inf Med, 2008. 47(Suppl 1): p. 67-79.
  • Bodenreider O. Semantic Web for Translational Biomedicine: Two Pilot Experiments [Abstract]. Proc. MIA Summit on Translational Bioinformatics 2008:141
  • Zeng K, Bodenreider O, Kilbourne J, Nelson SJ. Standards, Security and Usability: Experience with MyMedicationList [Abstract]. Proc. AMIA Spring Congress 2008
  • Zarin DA, Tse T. Tracking health services research studies [Letter]. JAMA. 2008 Nov 19;300(19):2252; author reply 2252. doi: 10.1001/jama.2008.612.
  • Bernal AB, Tolentino PA, Gavino AI, Fontelo P, Marcelo AB. Nursing informatics: challenges to Philippine nursing curriculum. AMIA Annu Symp Proc; 2008 Nov 8-12; Washington DC. p. 876.
  • Ducut EG, Liu F, Fontelo P. The Cost of Being Wireless: A Usage Analysis of the PubMed for Handhelds Portal at the Point-of-Care. AMIA Annu Symp Proc; 2008 Nov 8-12; Washington DC. p. 936.
  • Fontelo P, Liu F, Ducut EG. QR Code for Medical Information Uses. AMIA Annu Symp Proc; 2008 Nov 8-12; Washington DC. p. 945.
  • Liu F, Fontelo P, Fiszman M. Clinically-Weighted Terms in the Evaluation of MeSH Translations: BabelMeSH in Portuguese as a Model. AMIA Annu Symp Proc; 2008 Nov 8-12; Washington DC. p. 1027.
  • Mahmoud MA, Al-Khafaji JT, Al-Shorbaji N, Sara K, Al-Ubaydli M, Ghazzaoui R, Liu F, Fontelo P. BabelMeSH and PICO Linguist in Arabic. AMIA Annu Symp Proc; 2008 Nov 8-12; Washington DC. p. 944.
  • Sneiderman CA, Demner-Fushman D, Fung KW, Bray B. UMLS-based Automatic Image Indexing. AMIA Annu Symp Proc; 2008 Nov 8-12; Washington DC. p. 1141.
  • Gavino AI, Tolentino PA, Bernal AB, Fontelo P, Marcelo AB. Telemedicine via Short Messaging System (SMS) in Rural Philippines. AMIA Annu Symp Proc; 2008 Nov 8-12; Washington DC. p. 952.
  • Cheng W, Pearson G. Algorithm Developed To Make More Reliable Links To Better Photographic Views of Nursing Homes For Prototype "Nursing Home Screener" Web Site. Poster Section III at NIH Research Festival (TECH-3). National Institutes of Health October 2008. Bethesda, MD. October 2008.
  • Locatis CN, Berner E, Matthews P, Hammack G, Smith S, Maisiak R. Is Student Collocation a Factor in Synchronous Distance Education? International Assoc of Medical Science Educators Annual Meeting; 2008 Jul 25-29; Salt Lake City.
  • Sneiderman C, Fontelo P, Ackerman MJ. XO Computer Application to Medical Science Education. J International Assoc of Medical Science Educators: Special Issue Poster Abstracts of the 12th IAMSE Annual Meeting (2008 Jul 25-29; Salt Lake City);18(supplement 2):100.
  • Felts RL, Bennett A, Shi D, Freed E, Lifson J, Lowekamp B, Yoo TS, Bliss D, Subramaniam S. 3D Imaging of HIV transmission and entry using electron tomography and ion-abrasion scanning electron microscopy. Three Dimensional Electron Microscopy: Technical Advances and Recent Breakthroughs in 3DEM. Gordon Research Conference; 2008 Jun 15-20; Lucca (Barga), Italy.
  • Thoma GR, Ford G, Demner-Fushman D, Antani SK, Chung M. Software: Panorama
  • McDonald C. Dataset: LOINC Panels and Forms file
  • Locatis C. Performance, Instruction, and Technology in Health Care Education. Chapter 20 in: Reiser RA, Dempsey JV, editors. Trends and Issues in Instructional Design and Technology. Upper Saddle River, New Jersey: Merrill/Prentice Hall; 2007 (second edition). p. 197-208.
  • Mamlin BW, Overhage JM, Tierney WM, Dexter PR, McDonald CJ. Clinical decision support within the Regenstrief Medical Record System [Book//chapter] Health Informatics, Berner, Eta S. (Ed.) 2nd ed., 2007, 190-21.
  • Zeng K, Bodenreider O. Experience in Integrating Large RDF-based Biomedical Knowledge Resources with Oracle [Abstract]. Proc 8th International Oracle Life Sciences User Group Meeting 2007:(electronic proceedings: http://www.olsug.org/wiki/images/d/d1/Kelly_Zheng.pdf)
  • Conran R, Fontelo P, Liu F, Fontelo M, White E. Slide2Go: A Virtual Slide Collection for Pathology Education. AMIA Annu Symp Proc; 2007 Nov 10-14; Chicago. p. 918.
  • Fontelo P, Liu F, Muin M, Ducut E, Ackerman MJ, Paalan-Vasquez F. MMSPix - A Multimedia Messaging Service (MMS) Medical Images Weblog. AMIA Annu Symp Proc; 2007 Nov 10-14; Chicago. p. 956.
  • Leon SA, Fontelo P. MedlinePlus en Espaniol and Spanish-Speakers. AMIA Annu Symp Proc; 2007 Nov 10-14; Chicago. p. 1028.
  • Liu F, Fontelo P, Ackerman MJ. BabelMeSH2 and PICO Linguist2: Combined Language Search for MEDLINE/PubMed. AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2007 Nov 10-14; Chicago. p. 1036.
  • Tom O, Fontelo P, Liu F. Do Computer-generated Summaries, 'The Bottom Line (TBL)' Accurately Reflect Published Journal Abstracts? AMIA Annu Symp Proc; 2007 Nov 10-14; Chicago. p. 1135.
  • Fontelo P. Web Interface: BabelMeSH.
  • Fontelo P. Web Interface: Pico (Patient, Intervention, Comparison, and Outcome) Linguist.
  • Du H, Yoo TS. Visualizing Indexing Similarity Over the NLM Medical Subject Headings (MeSH). IEEE InfoVis [Information Visualization] 2007 Conference; 2007 Oct 28-30; Sacramento, California.
  • Zeng K, Bodenreider O. Integrating the UMLS into an RDF-Based Biomedical Knowledge Repository AMIA Annu Symp Proc. 2007 Oct 11:1170.
  • Li J, Demner-Fushman D, Thoma GR. Localizing Text and Symbols in Images from Biomedical Journal Articles Poster at 20th NIH Research Festival (BIOINFO-6), September 2007, National Institutes of Health
  • Simpson M, Ford G, Antani S, Demner-Fushman D, Thoma GR. A Lightweight Statistics Package for Interactive Publications Poster at 20th NIH Research Festival (TECH-15), September 2007, National Institutes of Health
  • Srinivasan B, Antani S, Demner-Fushman D, Thoma GR. Identification and Segmentation of Multi-Panel Images in Biomedical Journal Articles [Poster]. Poster at 20th NIH Research Festival (BIOINFO-1), September 2007, National Institutes of Health
  • Zhu Y, Long LR, Antani S, Xue Z, Thoma GR. Web-based STAPLE for Quality Estimation of Multiple Image Segmentations Poster at 20th NIH Research Festival (IMAG-12), September 2007, National Institutes of Health
  • Lussier YA, Bodenreider O. Clinical Ontologies for Discovery Applications In: Baker CJO, Cheung K-H, editors. Semantic Web: Revolutionizing knowledge discovery in the life sciences. New York: Springer; 2007. p. 101-119.
  • Johnson CR, Moorhead RM, Munzner TM, Pfister H, Rheingans P, Yoo TS. NIH-NSF Visualization Research Challenges Report. IEEE Press.
  • Fontelo P, Liu F, Ackerman MJ, Schardt CM, Keitz SA. askMEDLINE: a Report on a Year-long Experience. AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2006 Nov 11-15; Washington DC. p. 923.
  • Fontelo P. Web Interface: txt2MEDLINE.
  • Liu F, Fontelo P, Ackerman MJ. BabelMeSH: Development of a Cross-Language Tool for MEDLINE/PubMed. AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2006 Nov 11-15; Washington DC. p.1012.
  • Muin M, Fontelo P, Ackerman MJ. PubMed Interact: an Interactive Search Application for MEDLINE/PubMed. AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2006 Nov 11-15; Washington DC. p. 1039.
  • Tolentino H, Matters M, Walop W, Law B, Tong W, Liu F, Fontelo P, Kohl K, Payne D. Concept Negation in Free Text Components of Vaccine Safety Reports. AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2006 Nov 11-15; Washington DC. p. 1122.
  • McDonald CJ, Blevins L, Dexter P, Schadow G, Hook J, Abernathy G, Dugan T, Martin A, Phillips R, Davis M. Demonstration of the Indianapolis SPIN Query Tool for De-identified Access to Content of the Indiana Network for Patient Care’s (a Real RHIO) Database [Demo] AMIA Annu Symp Proc. 2006:1194.
  • Thorne AE, Bangalore A, Browne AC. Plug-and-play UMLS Knowledge Source Server using Web services and portlets. AMIA Annu Symp Proc. 2006:1121.
  • Aronson AR. API: Semantic Knowledge Representation
  • Morrison SM. Web Interface: Genetics Home Reference
  • Yoo TS, Rheingans P, Chen D, Olano M, Lowekamp B. Animated embroidery: a teapot in modern blackwork. ACM SIGGRAPH 2006 Teapot Exhibit entry; 2006 Jul 30-Aug 3; Boston.
  • Ackerman MJ. Anatomy in the Digital Age. In: Rifkin BA, Ackerman MJ. Human Anatomy: From the Renaissance to the Digital Age. 2006 May 2. New York: Abrams. p. 318-329.
  • Benjamin A. Rifkin, Ackerman MJ. Human Anatomy (From the Renaissance to the Digital Age). New York: Harry N. Abrams; 2006. 344 pages.
  • Bangalore A, Browne AC, Divita G. UMLSKS SUGGEST: an auto-complete feature for the UMLSKS interface using AJAX. AMIA Annu Symp Proc. 2006:851.
  • Yoo TS. 3D Medical Informatics: Information Science in Multiple Dimensions. In: Chen H, Fuller SS, Friedman C, Hersh W, editors. Medical Informatics: Knowledge Management and Data Mining in Biomedicine. New York: Springer Science. p. 333-58.
  • Yoo TS. The Insight Toolkit: An Open-Source Initiative in Data Segmentation and Registration. In: Johnson C, Hansen C, editors. The Visualization Handbook. Amsterdam: Elsevier; 2005. p. 733-48.
  • Thoma GR. Public Access to Anatomic Images Chapter in: Medical Informatics: Knowledge Management and Data Mining in Biomedicine
  • Azuaje F, Wang H, Bodenreider O. Ontology-driven Similarity Approaches to Supporting Gene Functional Assessment Proceedings of the ISMB'2005 SIG meeting on Bio-ontologies 2005:9-10
  • Fontelo P, Liu F, Ackerman MJ. MeSH Speller + askMEDLINE: Auto-completes MeSH Terms Then Searches MEDLINE/PubMed via Free-text, Natural Language Queries. AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2005 Oct 22-26; Washington DC. p. 957.
  • Fontelo P. Web Interface: Consensus Abstracts.
  • Fontelo P. Web Interface: PICO (Patient, Intervention, Comparison, and Outcome).
  • Kim GR, Zambrowicz C, Zhang D, Fontelo P, Abbott PA. Promoting the Usability of Online AMIA Symposium Proceedings. AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2005 Oct 22-26; Washington DC. p. 1008.
  • Liu F, Fontelo P, Muin M, Ackerman MJ. Virtual Evidence Cart - RP (VEC-RP). AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2005 Oct 22-26; Washington DC. p. 1034.
  • Muin M, Fontelo P, Ackerman MJ. PubMed informer: Monitoring MEDLINE/PubMed Through E-mail Alerts, SMS, PDA Downloads and RSS Feeds. AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2005 Oct 22-26; Washington DC. p. 1057.
  • Tolentino HD, Liu F, Sagaram D, Kamadjeu R, Fontelo P, Kohl K, Payne D. Creating a Vaccine Adverse Event Ontology for Public Health. AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2005 Oct 22-26; Washington DC. p. 978.
  • O'Brien JF, Yoo TS, editors. Modern Techniques for Implicit Modeling. Tutorial Notes for ACM SIGGRAPH 2005: the 32nd International Conference on Computer Graphics and Interactive Techniques; 2005 Jul 31-Aug 4; Los Angeles. 300 pages.
  • Ekong D, Fontelo P, Ackerman MJ. Computer Network for Health Care Organizations in Low-Resource Environments. Telemed J E Health. 2005 Apr;11(2):245.
  • Thoma GR. Mobile App: Turning the Pages
  • Fontelo P. Web Interface: askMEDLINE.
  • Ackerman MJ. Visible Human Project. McGraw-Hill 2004 Yearbook of Science & Technology. New York: McGraw-Hill. 2004. p. 369-72.
  • Bodenreider O. Web Interface: RxNav
  • Yoo TS, editor. Insight Into Images: Principles and Practice for Segmentation, Registration, and Image Analysis. Natick, Massachusetts: A.K. Peters; 2004 Aug 16. 410 pages.
  • McDonald CJ, Overhage JM, Mamlin BW, Dexter PD, Tierney WM. Physicians, information technology, and health care systems: a journey, not a destination [Letter]. J Am Med Inform Assoc. 2004 Mar-Apr;11(2):121-4.
  • Ackerman MJ, Yoo T. The Visible Human Data Sets (VHD) and Insight Toolkit (ITk): experiments in open source software. AMIA Annu Symp Proc [American Medical Informatics Association Annual Symposium Proceedings]; 2003 Nov 8-12; Washington DC. p. 773.
  • McCray AT, Bodenreider O. A Conceptual Framework for the Biomedical Domain The Semantics of Relationships: An Interdisciplinary Perspective. Boston: Kluwer Academic Publishers. 2002;:181-198.
  • McCray AT. Informatics Research, Development, and Training at the Lister Hill National Center for Biomedical Communications In: Yearbook of Medical Informatics 03. Stuttgart: Schattauer Verlag; 2003. pp 193-203.
  • Moore SR, Parascandola J. The Other Pharmacists in the American Civil War Am J Health Syst Pharm. 2000 Jul 1;57(13):1276.
  • Shin DW. Towards Efficient XML Query Processing, XML Developer Day in XML 2000: Graphic Communications Association. 2000;:1-45.
  • Fontelo P. Mobile App: PubMed for Handhelds.
  • Thoma GR, Razi A, Seamans J, Strupp-Adams A, Edwards L, Gao J, Ledoux MT. Dataset: AnatQuest
  • Locatis C, Fontelo P, Ackerman MJ, Sneiderman C. Feasibility Studies in IP Videoconferencing, Streaming, and Wireless Communication. AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2002 Nov 9-13; San Antonio, Texas. p. 1090.
  • Ackerman MJ. Visible Human Project: From Data to Knowledge. In: Haux R, Kulikowski C, editors. Yearbook of Medical Informatics 2002: Medical Imaging Informatics. International Medical Informatics Association (IMIA). p. 115-7.
  • Locatis C. Educational Technology and Instructional Development in Health Care. In: Reiser RA, Dempsey JV, editors. Trends and Issues in Instructional Design and Technology. Upper Saddle River, New Jersey: Merrill/Prentice Hall; 2002 Jan 1. p. 225-38.
  • Locatis CN. Instructional design and technology in healthcare. Chapter 17 in: Reiser RA, Dempsey JV, editors. Trends and Issues in Instructional Design and Technology. Upper Saddle River, New Jersey: Merrill Prentice Hall; 2002 Jan 1.
  • Locatis C. Design Considerations for Multimedia Programs. Chapter 18 in: Medsker K, Holdsworth KM, editors. Models and Strategies for Training Design. Silver Spring, Maryland: International Society for Performance Improvement; 2001. p. 355-73.
  • Yoo TS, Machiraju R, editors. From Transfer Functions to Level Sets: Advanced Topics in Volume Image Processing. Tutorial Notes for IEEE Visualization 2001; 2001 Oct 21-26; San Diego. 100 pages.
  • McDonald CJ. Is the placebo powerless? [Letter] N Engl J Med. 2001 Oct 25;345(17):1276-7; author reply 1278-9.
  • Marcelo AB, Fontelo P. A Pathology Report Metadata Registry: Framework for Semantic Interoperability Across Disparate Systems. Arch Pathol Lab Med. 2001 Aug;125(8):1014-1015.
  • Yoo TS, Machiraju R, editors. Image Processing for Volume Graphics. Tutorial Notes for ACM SIGGRAPH 2001; 2001 Aug 12-17; Los Angeles. 333 pages.
  • Bodenreider O, Bean CA. Relationships Among Knowledge Structures: Vocabulary Integration Within a Subject Domain. In: Bean A, Green R, editors. Relationships in the organization of knowledge. Springer; 2001. pp. 81-98.
  • Ackerman MJ, Banvard RA, guest editors. Computerized Medical Imaging and Graphics;24(3). Elsevier; 2000.
  • McDonald CJ, Weiner M, Hui SL. How many deaths are due to medical errors? [Letter]. JAMA. 2000;284(17):2187. doi:10.1001/jama.284.17.2184
  • Yoo TS, Machiraju R, editors. Image Processing for Volume Graphics and Analysis. Tutorial Notes for IEEE Visualization 2000; 2000 Oct 8-13; Salt Lake City. 125 pages.
  • Lowekamp B, Yoo TS. Software: Insight Toolkit (ITK): Software for Image Segmentation and Registration.
  • Lingappa G, Thoma GR, Antani SK. Web Interface: MyMorph
  • Davis D, Sager T, Senn S, Altman D, McDonald CJ. Claims for Glandular Supplements Still Unsubstantiated [LetterToEd] J of Applied Nutrition 1999 vol: 51 pp: 3-4.
  • Howe SE, executive editor. Networked Computing for the 21st Century: Supplement to the President's FY 1999 Budget. Subcommittee on Computing, Information, and Communications R&D; Committee on Technology; National Science and Technology Council.
  • McDonald CJ. Perspective: Need for Standards In Health Information Health Aff (Millwood). 1998 Nov-Dec;17(6):44-6.
  • Howe SE, editor. High Performance Computing and Communications: Foundation for America's Information Future -- Supplement to the President's FY 1996 Budget. Committee on Information and Communication, National Science and Technology Council.
  • Ackerman MJ. Dataset: Visible Human Project reference data sets.
  • Howe SE, editor. High Performance Computing & Communications: Technology for a National Information Infrastructure -- Supplement to the President's Fiscal Year 1995 Budget. Committee on Information and Communication, National Science and Technology Council.
  • Howe SE, editor. High Performance Computing & Communications: Toward a National Information Infrastructure -- The FY 1994 U.S. Research and Development Program. Committee on Physical, Mathematical, and Engineering Sciences; Federal Coordinating Council on Science, Engineering, and Technology; Office of Science and Technology Policy; Executive Office of the President.