| National Library of Medicine

Vreeman DJ, Abhyankar S, McDonald CJ. Re: Unit conversions between LOINC codes Published June 19, 2017 [Letter]. J Am Med Inform Assoc. 2018 May 1;25(5):614-615. doi: 10.1093/jamia/ocx087.

Abstract | PMID: 29025119

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Edinger T, Demner-Fushman D, Cohen AM, Bedrick S, Hersh W. Evaluation of Clinical Text Segmentation to Facilitate Cohort Retrieval. AMIA Annu Symp Proc. 2018 Apr 16;2017:660-669. eCollection 2017.

Abstract | PMID: 29854131 | PMCID: PMC5977655

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Fung K, Xue Z, Ameye F, Gutierrez AR, D'Have A. Achieving Logical Equivalence between SNOMED CT and ICD-10-PCS Surgical Procedures. AMIA Annu Symp Proc. 2018 Apr 16;2017:724-733. eCollection 2017.

Abstract | PMID: 29854138 | PMCID: PMC5977651

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McDonald CJ. Top LOINC Codes – Orders and Observations

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Abhyankar S, Schluter P, Bennett K, Vreeman D, McDonald CJ. Enabling Interoperability between Healthcare Devices and EHR Systems. In 2017 AMIA Symposium. Wasington DC: IEEE.

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McDonald CJ, Vreeman D, Wang K, Carr C, Colins B, Abhyankar S, Deckard J, Rubin D, Langlotz C. The LOINC/RSNA Radiology Playbook: A unified terminology for radiology procedures. . In 2017 AMIA Symposium. Washington DC.

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Kury F, Baik SH, McDonald CJ. Cardioprotective Drugs and Incident Dementias in Medicare's Big Data. AMIA 2017.

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Fung K, Gutierrez A, Ameye F, D’Have A, Ariel B. Demonstrating the Benefits of Mapping SNOMED CT to ICD-10-PCS through a Prototype Application for End User Implementation. SNOMED Expo Oct 2017, Bratislava, Slovakia pp. 0

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Abhyankar S, Vreeman DJ, Westra BL, Delaney CW. Comments on the Use of LOINC and SNOMED CT for Representing Nursing Data [Letter]. Int J Nurs Knowl. 2017 Aug 30. doi: 10.1111/2047-3095.12183. [Epub ahead of print]

Abstract | PMID: 28856826

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Raje S, Bodenreider O. Interoperability of disease concepts in clinical and research ontologies – Contrasting coverage and structure in the Disease Ontology and SNOMED CT. Stud Health Technol Inform. 2017;245:925-929.

Abstract | PMID: 29295235 | PMCID: PMC5881393

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Vreeman DJ, Abhyankar S, McDonald CJ. Unit conversions between LOINC codes Published June 19, 2017 [Letter]. Journal of the American Medical Informatics Association, 1–3. http://doi.org/10.1093/jamia/ocx087.

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McDonald CJ, Maglott D, Abhyankar S, Goodwin R, Kanduru A, Lu S, Lynch P, Vreeman D, Wang Y, Wood G. HL7 Version 2.5.1 Implementation Guide: Lab Results Interface (LRI), Release 1, STU Release 4. US Realm, Chapter 5, Clinical Genomics Results Reporting. Published for May 2017 Ballot.

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Raje S, Bodenreider O. Investigating the coverage of diseases across biomedical research and clinical ontologies. Proceedings of the AMIA Joint Summits on Translational Science CRI: 384-385.

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Bahr NJ, Nelson SD, Winnenburg R, Bodenreider O. Eliciting the Intension of Drug Value Sets - Principles and Quality Assurance Applications. Stud Health Technol Inform. 2017;245:843-847.

Abstract | PMID: 29295218 | PMCID: PMC5881398

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Dhombres F, Bodenreider O. Trends in Fetal Medicine: A 10-Year Bibliometric Analysis of Prenatal Diagnosis. Stud Health Technol Inform. 2017;245:853-857.

Abstract | PMID: 29295220 | PMCID: PMC5884683

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Nelsonn SD, Parker J, Lario R, Winnenburg R, Erlbaum MS, Lincoln MJ, Bodenreider O. Interoperability of medication classification systems: Lessons learned mapping estab-lished pharmacologic classes (EPCs) to SNOMED CT. Stud Health Technol Inform. 2017;245:920-924.

Abstract | PMID: 29295234 | PMCID: PMC5881380

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Yu Z, Nguyen T, Dhombres F, Johnson T, Bodenreider O. "Hybrid Topics" - Facilitating the Interpretation of Topics Through the Addition of MeSH Descriptors to Bags of Words. Stud Health Technol Inform. 2017;245:662-666.

Abstract | PMID: 29295179 | PMCID: PMC5875427

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Ben Abacha A. NLM_NIH at TREC 2016 Clinical Decision Support Track. Proceedings of TREC 2016, the 25th Text Retrieval Conference, Gaithersburg, MD, USA, November 2016.

Abstract | pub9489.pdf

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Madani S, Henderson J, Fung K. Development of an oncology subset of SNOMED CT based on patient notes. AMIA Annu Symp Proc 2016: 91-92.

Abstract | pub9465.pdf

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Boyce RD, Voss EA, Huser V, Evans L, Reich C, Duke JD, Tatonetti NP, Lorberbaum T, Dumontier M, Hauben M, Wallberg M. LAERTES: An open scalable architecture for linking pharmacovigilance evidence sources with clinical data. Proc International Conference on Biomedical Ontology and BioCreative (ICBO BioCreative 2016). http://icbo2016.cgrb.oregonstate.edu/node/354.

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Homer ML, Palmer NP, Bodenreider O, Cami A, Chadwick L, Mandl KD. The Drug Data to Knowledge Pipeline: Large-Scale Claims Data Classification for Pharmacologic Insight. AMIA Jt Summits Transl Sci Proc. 2016 Jul 20;2016:105-11. eCollection 2016.

Abstract | pub9334.pdf | PMID: 27570659 | PMCID: PMC5001754

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Bodenreider O. Identifying missing hierarchical relations in SNOMED CT from logical definitions based on the lexical features of concept names. Proceedings of the 6th International Conference on Biomedical Ontology (ICBO 2016), 2016: p. (electronic proceedings: http://ceur-ws.org/Vol-1747/IT601_ICBO2016.pdf).

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Kury F, Bodenreider O. Desiderata for drug classification systems for their use in analyzing large drug prescription datasets. Proceedings of the 3rd Workshop on Data Mining for Medical Informatics (DMMI 2016), 2016.

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Cimino JJ, Huser V. Characterization of the Context of Drug Concepts in Research Protocols: An Empiric Study to Guide Ontology Development. AMIA Annu Symp Proc. 2015 Nov 5;2015:441-7. eCollection 2015.

Abstract | PMID: 26958176 | PMCID: PMC4765569

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Dhombres F, Bodenreider O. Investigating the lexico-syntactic properties of phenotype terms – Application to interoperability between HPO and SNOMED CT. Proc Joint Bio-Ontologies and BioLINK ISMB'2015 SIG session "Phenotype Day" 2015:8-11.

Abstract | pub9335.pdf

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Fu GE, Bolton NQ, Rosinach LI, Furlong V, Nguyen AP, Sheth O, Bodenreider O, Dumontier M. Exposing provenance metadata using different RDF models. Proceedings of the International Conference on Semantic Web Applications and Tools for Life Sciences (SWAT4LS 2015), 2015: p. (electronic proceedings: http://www.swat4ls.org/wp-content/uploads/2015/10/SWAT4LS_2015_paper_11.pdf).

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Kilicoglu H, Rogers W. A Hybrid System for Extracting Chemical-Disease Relationships from Scientific Literature. 2015. BioCreative 5 Proceedings.

Abstract | pub9350.pdf

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Bodenreider O, Rodriguez L. Analyzing U.S. prescription lists with RxNorm and the ATC/DDD Index. AMIA Annu Symp Proc. 2014 Nov 14;2014:297-306. eCollection 2014.

Abstract | pub9011.pdf | PMID: 25954332 | PMCID: PMC4419961

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Cimino JJ, Remennick L. Adapting a Clinical Data Repository to ICD-10-CM through the use of a Terminology Repository. AMIA Annu Symp Proc. 2014 Nov 14;2014:405-13. eCollection 2014.

Abstract | PMID: 25954344 | PMCID: PMC4419915

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Fung KW, Richesson R, Bodenreider O. Coverage of rare disease names in standard terminologies and implications for patients, providers, and research. AMIA Annu Symp Proc. 2014 Nov 14;2014:564-72. eCollection 2014.

Abstract | PMID: 25954361 | PMCID: PMC4419993

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Pan X, Cimino JJ. Locating relevant patient information in electronic health record data using representations of clinical concepts and database structures. AMIA Annu Symp Proc. 2014 Nov 14;2014:969-75. eCollection 2014.

Abstract | PMID: 25954405 | PMCID: PMC4419946

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Winnenburg R, Bodenreider O. Desiderata for an authoritative Representation of MeSH in RDF. AMIA Annu Symp Proc. 2014 Nov 14;2014:1218-27. eCollection 2014.

Abstract | PMID: 25954433 | PMCID: PMC4419968

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Nguyen V, Bodenreider O, Sheth AP. Don't Like RDF Reification? Making Statements about Statements Using Singleton Property. Proc Int World Wide Web Conf. 2014 Apr 11;2014:759-770.

Abstract | pub8934.pdf | PMID: 25750938 | PMCID: PMC4350149

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Bodenreider O. Multi-lingual features of the Unified Medical Language System. Proc. CLEF-ER 2013 workshop 2013.

Abstract | 2013-clef_er-ob-abstract.pdf | URL: http://www.clef2013.org/index.php?page=Pages/proceedings.php

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Roberts K, Shooshan SE, Rodriguez L, Abhyankar S, Kilicoglu H, Demner-Fushman D. Machine Learning Methods for Detecting Risk Factors for Heart Disease in EHRs. Proc i2b2 2014 Workshop

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Winnenburg R, Bodenreider O. Coverage of phenotypes in standard terminologies. Joint Bio-Ontologies and BioLINK ISMB'2014 SIG session "Phenotype Day" 2014:41-44.

Abstract | pub8937.pdf

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Winnenburg R, Bodenreider O. Evaluating the consistency of inferred drug-class membership relations in NDF-RT. Proc 17th ISMB'2014 SIG meeting "Bio-Ontologies" 2014

Abstract | pub8936.pdf | URL: https://drive.google.com/file/d/0B6AZUdKw1IVHeGVtTVZCRXJhbFk/

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Abhyankar S, Demner-Fushman D. A simple method to extract key maternal data from neonatal clinical notes. AMIA Annu Symp Proc. 2013 Nov 16;2013:2-9. eCollection 2013.

Abstract | PMID: 24551317 | PMCID: PMC3900117

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Cimino JJ, Overby CL, Devine EB, Hulse NC, Jing X, Maviglia SM, Del Fiol G. Practical choices for infobutton customization: experience from four sites. AMIA Annu Symp Proc. 2013 Nov 16;2013:236-45. eCollection 2013.

Abstract | PMID: 24551334 | PMCID: PMC3900175

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Huser V, Cimino JJ. Desiderata for healthcare integrated data repositories based on architectural comparison of three public repositories. AMIA Annu Symp Proc. 2013 Nov 16;2013:648-56. eCollection 2013.

Abstract | PMID: 24551366 | PMCID: PMC3900207

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Winnenburg R, Bodenreider O. Metrics for assessing the quality of value sets in clinical quality measures. AMIA Annu Symp Proc. 2013 Nov 16;2013:1497-505. eCollection 2013.

Abstract | PMID: 24551422 | PMCID: PMC3900160

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Abhyankar S, McDonald CJ. Overweight, obesity, and all-cause mortality [Letter]. JAMA. 2013 Apr 24;309(16):1680-1. doi: 10.1001/jama.2013.3092.

Abstract | pub2013-013.pdf | PMID: 23613065 | URL: http://jama.jamanetwork.com/article.aspx?articleid=1681396

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McDonald CJ, Vreeman DJ, Abhyankar S. Comment on "time to integrate clinical and research informatics" [Letter]. Sci Transl Med. 2013 Apr 3;5(179):179le1. doi: 10.1126/scitranslmed.3005700.

Abstract | PMID: 23552367

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Cimino JJ. Tutorial: meeting data access and reporting requirements with the NIH’s Biomedical Translational Research Information System (BTRIS).

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Hruby GW, Boland MR, Cimino J, Gao J, Wilcox AB, Hirschberg J, Weng C. Characterization of the biomedical query mediation process. AMIA Jt Summits Transl Sci Proc. 2013 Mar 18;2013:89-93. eCollection 2013.

Abstract | PMID: 24303242 | PMCID: PMC3845777

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Zhang X, Zou J, Le DX, Thoma GR. Combining Discriminative SVM models for the Improved Recognition of Investigator Names in Medical Articles. Proceedings of SPIE Volume 8658, Document Recognition and Retrieval XX, IS&T/SPIE Electronic Imaging 2013.

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Fung K. Dataset: SNOMED CT to ICD-10 Cross Map

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Huser V, Cimino JJ. Precision and negative predictive value of links between ClinicalTrials.gov and PubMed. AMIA Annu Symp Proc. 2012;2012:400-8. Epub 2012 Nov 3.

Abstract | PMID: 23304310 | PMCID: PMC3540528

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Kawamoto K, Jacobs J, Welch BM, Huser V, Paterno MD, Del Fiol G, Shields D, Strasberg HR, Huag PJ, Liu Z, Jenders RA, Rowed DW, Chertcoff D, Fehre K, Adlassnig KP, Curtis C. Clinical information system services and capabilities desired for scalable, standards-based, service-oriented decision support: consensus assessment of the Health Level 7 clinical decision support Work Group. AMIA Annu Symp Proc. 2012;2012:446-55. Epub 2012 Nov 3.

Abstract | PMID: 23304315 | PMCID: PMC3540445

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Bodenreider O. API: Prescribable

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Callaghan F, Jackson MT, Demner-Fushman D, Abhyankar S, McDonald C. Analysis of data that has been extracted from free-text using natural language processing: a likelihood model for misclassification with an application to medical informatics. International Conference on Advances in Interdisciplinary Statistics and Combinatorics (AISC2012), Greensboro, NC, October 2012

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Callaghan F, Jackson MT, Demner-Fushman D, Abhyankar S, McDonald CJ. NLP-derived information improves the estimates of risk of disease compared to estimates based on manually extracted data alone. 5th International Symposium on Semantic Mining in Biomedicine (SMBM 2012), 2012 Sept 3-4, Zurich, Switzerland.

Abstract | pub2012-068.pdf | URL: http://www.zora.uzh.ch/64476/65/smbm12.pdf

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Fung K. Dataset: SNOMED CT to ICD-10-CM Map

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McDonald CJ, Vreeman D, Goodwin RM. Dataset: LOINC Top 2000+ Lab Observations and Mapper's Guide

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Bodenreider O. Web Interface: RxMix

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McDonald CJ, Tierney WM. The effect of electronic health records on test ordering [Letter}. Health Aff (Millwood). 2012 Jun;31(6):1365; author reply 1366. doi: 10.1377/hlthaff.2012.0471.

Abstract | pub2012011.pdf | PMID: 22665848

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Fung KW. Dataset: ICD-9-CM to SNOMED CT Map

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Fung KW. Web Interface: I-Magic SNOMED-CT to ICD-10-CM code mapping tool.

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McDonald CJ, McDonald MH. Electronic medical records and preserving primary care physicians' time: comment on "electronic health record-based messages to primary care providers" [Letter]. Arch Intern Med. 2012 Feb 13;172(3):285-7. doi: 10.1001/archinternmed.2011.1678.

Abstract | PMID: 22332168

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Mougin F, Burgun A, Bodenreider O. Comparing Drug-class Membership in ATC and NDF-RT Proc IHI 2012 2012:437-443

Abstract | pub2012010.pdf

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Adamusiak T, Bodenreider O. Quality assurance in LOINC using Description Logic. AMIA Annu Symp Proc. 2012;2012:1099-108. Epub 2012 Nov 3.

Abstract | PMID: 23304386 | PMCID: PMC3540427

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Cimino J, Jing X, Del Fiol G. Meeting the electronic health record "meaningful use" criterion for the HL7 infobutton standard using OpenInfobutton and the Librarian Infobutton Tailoring Environment (LITE). AMIA Annu Symp Proc. 2012;2012:112-20. Epub 2012 Nov 3.

Abstract | PMID: 23304279 | PMCID: PMC3540503

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Fung KW, Xu J. Synergism between the mapping projects from SNOMED CT to ICD-10 and ICD-10-CM. AMIA Annu Symp Proc. 2012;2012:218-27. Epub 2012 Nov 3.

Abstract | amia_2012_symp_0218.pdf | PMID: 23304291 | PMCID: PMC3540534

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Winnenburg R, Bodenreider O. Issues in creating and maintaining value sets for clinical quality measures. AMIA Annu Symp Proc. 2012;2012:988-96. Epub 2012 Nov 3.

Abstract | PMID: 23304374 | PMCID: PMC3540585

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Xu J, Fung KW. Handling age specification in the SNOMED CT to ICD-10-CM cross-map. AMIA Annu Symp Proc. 2012;2012:1014-22. Epub 2012 Nov 3.

Abstract | PMID: 23304377 | PMCID: PMC3540567

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Cameron D, Kavuluru R, Bodenreider O, Mendes PN, Sheth AP, Thirunarayan K. Semantic predications for complex information needs in biomedical literature BIBM 2011:512-519.

Abstract | pub2011069.pdf

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Goodwin RM, Abhyankar S, Zuckerman AE, Copeland SM, Sarkar D, Cuthbert C, Therrell BL, Ojodu J, Lloyd-Puryear MA, Jenders RA, McDonald CJ. Newborn screening health information exchange: updated guidance for coding and HL7 electronic messaging. APHL Newborn Screening and Genetics Testing Symposium. 2011 Nov 7.

Abstract | pub2011-007.pdf | URL: http://www.aphl.org/conferences/proceedings/Documents/2011/2011_APHL_NBS_Genetic...

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Abhyankar S, Goodwin RM, Zuckerman A, McDonald CJ. Dataset: newborn screening results annotated example HL7 electronic message guidance (v 5.2).

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Abhyankar S, Therrell B, Eaton R, Cuthbert C, Ojodu J, Copeland S, Goodwin RM, McDonald C. Using LOINC and HL7 to standardize hemoglobinopathy screening result reporting. APHL Newborn Screening and Genetics Testing Symposium. 2011 Nov 7.

Abstract | pub2011-133.pdf | URL: http://www.aphl.org/conferences/proceedings/Documents/2011/2011_APHL_NBS_Genetic...

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Bodenreider O, Peters L, Nguyen T. Browser and application programming interfaces for drug information sources. AMIA Annu Symp Proc, 2011: p. 2129.

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Abhyankar S, Goodwin RM, Zuckerman AE, McDonald CJ. Dataset: Newborn screening LOINC panel.

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Bodenreider O. API: NDF-RT

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Abhyankar S, Goodwin RM, Zuckerman AE, McDonald CJ. Dataset: newborn screening LOINC codes (AHIC panel).

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McDonald CJ, Abhyankar S, Taft L. Dataset: common units of measure - subset of the Unified Code for Units of Measure.

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Bodenreider O, Peters L, Nguyen T. RxNav: Browser and Application Programming Interfaces for Drug Information Sources [Abstract]. AMIA Annu Symp Proc 2011:2129

Abstract | pub2011018.pdf

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Nguyen V, Bodenreider O, Minning T, Sheth AP. The knowledge-driven exploration of integrated biomedical knowledge sources facilitates the generation of new hypotheses Proceedings of the First International Workshop on Linked Science (LISC 2011) 2011:(electronic proceedings: http://ceur-ws.org/Vol-783/)

Abstract | pub2011019.pdf

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McDonald C, Vreeman D, Goodwin RM. Dataset: LOINC Top 300+ Lab Orders

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Fung KW. Dataset: Nursing Problem List Subset of SNOMED CT

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Doughty E, Kirk B, Kann MG, Bodenreider O. Integrating Drug-gene Associations Mined from the Literature with Drug Information Sources - A Comparison with PharmGKB Proceedings of the 2011 PSB Workshop on Mining the Pharmacogenomics Literature 2011

Abstract | LHNCBC-2011-002.pdf

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Campbell JR, Xu J, Fung K. Can SNOMED CT fulfill the vision of a compositional terminology? Analyzing the use case for problem list. AMIA Annu Symp Proc. 2011;2011:181-8. Epub 2011 Oct 22.

Abstract | PMID: 22195069 | PMCID: PMC3243203

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Fung K, Xu J, Rosenbloom ST, Mohr D, Maram N. Testing Three Problem List Terminologies in a simulated data entry environment. AMIA Annu Symp Proc. 2011;2011:445-54. Epub 2011 Oct 22.

Abstract | PMID: 22195098 | PMCID: PMC3243193

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Jing X, Cimino JJ. Graphical methods for reducing, visualizing and analyzing large data sets using hierarchical terminologies. AMIA Annu Symp Proc. 2011;2011:635-43. Epub 2011 Oct 22.

Abstract | PMID: 22195119 | PMCID: PMC3243153

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Peters L, Kapusnik-Uner JE, Nguyen T, Bodenreider O. An approximate matching method for clinical drug names. AMIA Annu Symp Proc. 2011;2011:1117-26. Epub 2011 Oct 22.

Abstract | pub2011020.pdf | PMID: 22195172 | PMCID: PMC3243188

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Abhyankar S, Lloyd-Puryear MA, Goodwin R, Copeland S, Eichwald J, Therrell BL, Zuckerman A, Downing G, McDonald CJ. Standardizing newborn screening results for health information exchange. AMIA Annu Symp Proc. 2010 Nov 13;2010:1-5.

Abstract | pub2010037.pdf | PMID: 21346929 | PMCID: PMC3041276

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Bodenreider O, Demner-Fushman D. Investigating drug classes in biomedical terminologies from the perspective of clinical decision support. AMIA Annu Symp Proc. 2010 Nov 13;2010:56-60.

Abstract | pub2010006.pdf | PMID: 21346940 | PMCID: PMC3041355

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Lin M-C, Vreeman DJ, McDonald CJ, Huff SM. Correctness of Voluntary LOINC Mapping for Laboratory Tests in Three Large Institutions. AMIA Annu Symp Proc. 2010 Nov 13;2010:447-51.

Abstract | pub2010042.pdf | PMID: 21347018 | PMCID: PMC3041457

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Mougin F, Bodenreider O, Burgun A. Looking for Anemia (and Other Disorders) in SNOMED CT: Comparison of Three Approaches and Practical Implications. AMIA Annu Symp Proc. 2010 Nov 13;2010:527-31.

Abstract | pub2010010.pdf | PMID: 21347034 | PMCID: PMC3041405

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Peters L, Kapusnik-Uner JE, Bodenreider O. Methods for managing variation in clinical drug names. AMIA Annu Symp Proc. 2010 Nov 13;2010:637-41.

Abstract | pub2010011.pdf | PMID: 21347056 | PMCID: PMC3041346

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Vreeman DJ, McDonald CJ, Huff SM. Representing Patient Assessments in LOINC®. AMIA Annu Symp Proc. 2010 Nov 13;2010:832-6.

Abstract | pub2010041.pdf | PMID: 21347095 | PMCID: PMC3041404

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Zhang GQ, Bodenreider O. Large-scale, Exhaustive Lattice-based Structural Auditing of SNOMED CT. AMIA Annu Symp Proc. 2010 Nov 13;2010:922-6.

Abstract | pub2010014.pdf | PMID: 21347113 | PMCID: PMC3041382

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Fung KW. API: RxTerms

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Fung KW. Dataset: SNOMED CT route of administration subset.

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Demner-Fushman D, Karpinski J, Thoma GR. Automatically building a repository to support evidence-based practice. Proceedings of the 2nd Workshop on Building and evaluating resources for biomedical text mining (BioTxtM 2010), 7th Language Resources and Evaluation Conference (LREC 2010). Valetta, Malta. May 2010.

Abstract | pub2010-095.pdf

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Bodenreider O, Mougin F, Burgun A. Automatic Determination of Anti-coagulation Status with NDF-RT Proceedings of the 13th ISMB'2010 SIG meeting Bio-ontologies 2010:140-143

Abstract | pub2010003.pdf

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Dumontier M, Andersson B, Batchelor C, Domarew C, Jentzsch A, Luciano J, Pichler E, Prud'hommeaux E, Whetzel PL, Bodenreider O, Clark T, Harland L, Kashyap V, Kos P, Kozlovsky J, McGurk J, Ogbuji C, Samwald M, Schriml L, Tonellato PJ, Zhao J, Stephens S. The Translational Medicine Ontology: Driving Personalized Medicine by Bridging the Gap from Bedside to Bench Proceedings of the 13th ISMB'2010 SIG meeting Bio-ontologies 2010:120-123

Abstract | pub2010004.pdf

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Sahoo SS, Bodenreider O, Hitzler P, Sheth A, Thirunarayan K. Provenance Context Entity (PaCE): Scalable Provenance Tracking for Scientific RDF Data SSDBM: Springer, 2010. p. 461-470

Abstract | pub2010012.pdf

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Zuckerman AE, Downs SM, McDonald CJ, Weisman JL, Ross DA. Newborn Screening as the Model for Interoperable Genetic Data AMIA Annu Symp Proc. 2010

Abstract | pub2010035.pdf

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Cardillo E, Hernandez, Jr G, Bodenreider O. Integrating consumer-oriented vocabularies with selected professional ones from the UMLS using Semantic Web Technologies. Proceedings of the eHealth 2010 conference, 2010: p. (paper 10579 - electronic proceedings).

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Bodenreider O, Burgun A. A framework for comparing phenotype annotations of orthologous genes. Stud Health Technol Inform. 2010;160(Pt 2):1309-13.

Abstract | pub2010005.pdf | PMID: 20841896

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Erdogan H, Erdem E, Bodenreider O. Exploiting UMLS semantics for checking semantic consistency among UMLS concepts. Stud Health Technol Inform. 2010;160(Pt 1):749-53.

Abstract | pub2010007.pdf | PMID: 20841786

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Fiszman M, Bray B, Shin D, Kilicoglu H, Bennett GC, Bodenreider O, Rindflesch TC. Combining relevance assignment with quality of the evidence to support guideline development. Stud Health Technol Inform. 2010;160(Pt 1):709-13.

Abstract | pub2010008.pdf | PMID: 20841778

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Wei D, Bodenreider O. Using the abstraction network in complement to description logics for quality assurance in biomedical terminologies - a case study in SNOMED CT. Stud Health Technol Inform. 2010;160(Pt 2):1070-4.

Abstract | pub2010013.pdf | PMID: 20841848

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Mougin F, Bodenreider O, Burgun A. Identifying anatomical concepts associated with ICD10 diseases. Proceedings of the 8th Conference on Terminology and Artificial Intelligence (TIA 2009), 2009: p. (electronic proceedings: http://www.irit.fr/TIA09/start_here.htm).

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Bodenreider O. Using SNOMED CT in combination with MedDRA for reporting signal detection and adverse drug reactions reporting. AMIA Annu Symp Proc. 2009 Nov 14;2009:45-9.

Abstract | pub2009026.pdf | PMID: 20351820 | PMCID: PMC2815504

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Burgun A, Mougin F, Bodenreider O. Two approaches to integrating phenotype and clinical information. AMIA Annu Symp Proc. 2009 Nov 14;2009:75-9.

Abstract | pub2009027.pdf | PMID: 20351826 | PMCID: PMC2815427

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Cimino JJ. The contribution of observational studies and clinical context information for guiding the integration of infobuttons into clinical information systems. AMIA Annu Symp Proc. 2009 Nov 14;2009:109-13.

Abstract | PMID: 20351832 | PMCID: PMC2815416

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Geller J, Morrey CP, Xu J, Halper M, Elhanan G, Perl Y, Hripcsak G. Comparing inconsistent relationship configurations indicating UMLS errors. AMIA Annu Symp Proc. 2009 Nov 14;2009:193-7.

Abstract | PMID: 20351848 | PMCID: PMC2815406

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Haerian K, McKeeby J, DiPatrizio G, Cimino JJ. Use of clinical alerting to improve the collection of clinical research data. AMIA Annu Symp Proc. 2009 Nov 14;2009:218-22.

Abstract | PMID: 20351853 | PMCID: PMC2815392

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An L, Obradovic Z, Smith D, Bodenreider O, Megalooikonomou V. Mining Association Rules among Gene Functions in Clusters of Similar Gene Expression Maps. Workshop proceedings of the IEEE International Conference on Bioinformatics and Biomedicine (BIBM09) -- Workshop on Data Mining in Functional Genomics 2009: p. 254-259

Abstract | PMID: 25635265 | PMCID: PMC4307020

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Bodenreider O. Provenance information in biomedical knowledge repositories – A use case. Proceedings of the First International Workshop on the role of Semantic Web in Provenance Management (SWPM 2009), 2009: p. (electronic proceedings: http://ceur-ws.org/Vol-526/).

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Fung K, Berglund D, Scichilone R, Brear H, Giannangelo K. SNOMED CT to ICD-10 mapping project update - a joint task for IHTSDO and WHO-FIC. Meeting of the WHO Collaborating Centers for the Family of International Classifications. October 2009.

Abstract | URL: http://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=1&sqi=2&ved=0CDIQFj...

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Fung KW. Dataset: CORE problem list of SNOMED CT.

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McDonald CJ, Fung K, Wang Y, Lynch P, Hook J, Vreeman D. Towards a standardized HL7 clinical data capture tool – with a trial implementation in NLM’s personal health record. 10th International HL7 Interoperability Conference. May 2009.

Abstract

Overby CL, Tarczy-Hornoch P, Demner-Fushman D. The potential for automated question answering in the context of genomic medicine: An assessment of existing resources and properties of answers Summit on Translat Bioinforma. 2009 Mar 1;2009:1-25.

Abstract | PMID: 21347155 | PMCID: PMC3041571

Abstract

Bodenreider O. Comparing SNOMED CT and the NCI Thesaurus through Semantic Web Technologies Proc. KR-MED 2008

Abstract

Bodenreider O. Ontologies and Data Integration in Biomedicine: Success Stories and Challenging Issues In: Bairoch A, Cohen-Boulakia S, Froidevaux C, editors. Proceedings of the Fifth International Workshop on Data Integration in the Life Sciences (DILS 2008); Berlin Heidelberg New York: Springer; 2008. p. 1-4

Abstract | pub2008024.pdf

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Bodenreider O. Semantic Web for Translational Biomedicine: Two Pilot Experiments [Abstract]. Proc. MIA Summit on Translational Bioinformatics 2008:141

Abstract | pub2008025.pdf

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Mougin F, Burgun A, Bodenreider O, Chabalier J, Loreal O, Le Beux P. Automatic Methods for Integrating Biomedical Data Sources in a Mediator-Based System Proc DILS 2008. Berlin Heidelberg New York: Springer; 2008. p. 61-76

Abstract | pub2008028.pdf

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Peters L, Bodenreider O. Using the RxNorm Web Services API for Quality Assurance Purposes AMIA Annu Symp Proc. 2008 Nov 6:591-5.

Abstract | PMID: 18999038 | PMCID: PMC2656097

Abstract

Rogers J, Bodenreider O. SNOMED CT: Browsing the Browsers Proc of the Third International Conference on Knowledge Representation in Medicine (KR-MED 2008) 2008:30-36

Abstract

Bodenreider O, Coban ZH, Doganay MC, Erdem E, Kosucu H. A preliminary report on answering complex queries related to drug discovery using answer set programming. Proceedings of the 3rd International Workshop on Applications of Logic Programming to the (Semantic) Web and Web Services (ALPSWS2008), 2008: p. 85-90 (electronic proceedings: http://ceur-ws.org/Vol-434/).

Abstract

Wang Y, Wei D, Xu J, Elhanan G, Perl Y, Halper M, Chen Y, Spackman KA, Hripcsak G. Auditing complex concepts in overlapping subsets of SNOMED. AMIA Annu Symp Proc. November 2008:273-7.

Abstract | PMID: 18998838 | PMCID: PMC2656006

Abstract

Bodenreider O. Issues in Mapping LOINC Laboratory Tests to SNOMED CT AMIA Annu Symp Proc. 2008 Nov 6:51-5

Abstract | PMID: 18999311 | PMCID: PMC2655945

Abstract

Demner-Fushman D, Seckman C, Fisher C, Hauser SE, Clayton J, Thoma GR. A prototype system to support evidence-based practice AMIA Annu Symp Proc. 2008 Nov 6:151-5.

Abstract | PMID: 18998835 | PMCID: PMC2656073

Abstract

Fung KW, McDonald C, Bray BE. RxTerms - a drug interface terminology derived from RxNorm. AMIA Annu Symp Proc. 2008 Nov 6:227-31

Abstract | PMID: 18998891 | PMCID: PMC2655997

Abstract

Mougin F, Bodenreider O. Auditing the NCI Thesaurus with Semantic Web Technologies AMIA Annu Symp Proc. 2008 Nov 6:500-4

Abstract | pub2008026.pdf | PMID: 18999265 | PMCID: PMC2655981

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Nelson SJ, Zeng K, Bodenreider O. MyMedicationList: Integrating Personal Medication Records with Resources AMIA Annu Symp Proc. 2008 Nov 6:1228

Abstract | pub2008029.pdf | PMID: 18998987

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Patel CO, Cimino JJ. Using Semantic and Structural Properties of the UMLS to Discover Potential Terminological Relationships AMIA Annu Symp Proc. 2008 Nov 6:555.

Abstract | PMID: 18999270 | PMCID: PMC2656063

Abstract

Wei D, Wang Y, Perl Y, Xu J, Halper M, Spackman KA. Complexity measures to track the evolution of a SNOMED hierarchy. AMIA Annu Symp Proc. 2008 Nov 6:778-82.

Abstract | PMID: 18998922 | PMCID: PMC2655969

Abstract

Zeng K, Bodenreider O, Nelson SJ. Design and Implementation of a Personal Medication Record - MyMedicationList AMIA Annu Symp Proc. 2008 Nov 6:844-8

Abstract | pub2008036.pdf | PMID: 18998962 | PMCID: PMC2656100

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McDonald C. Dataset: LOINC Panels and Forms file

Abstract

Zeng K, Bodenreider O. Experience in Integrating Large RDF-based Biomedical Knowledge Resources with Oracle [Abstract]. Proc 8th International Oracle Life Sciences User Group Meeting 2007:(electronic proceedings: http://www.olsug.org/wiki/images/d/d1/Kelly_Zheng.pdf)

Abstract | pub2007008.pdf

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Zeng K, Bodenreider O, Kilbourne J, Nelson SJ. RxNav: An Integrated View on Drug Information Proc AMIA Annu Symp; 2007:1202

Abstract | pub2007086.pdf

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Zhang S, Bodenreider O. Hybrid Alignment Strategy for Anatomical Ontologies Results of the 2007 Ontology Alignment Contest Proc OAEI 2007:139-149

Abstract | pub2007088.pdf

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Zeng K, Bodenreider O, Kilbourne J, Nelson S. RxNav: Towards an Integrated View on Drug Information MEDINFO 2007:386.

Abstract | pub2007046.pdf

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Lin J, Demner-Fushman D. Semantic clustering of answers to clinical questions. AMIA Annu Symp Proc. 2007 Oct 11:458-62.

Abstract | pub2007065.pdf | PMID: 18693878 | PMCID: PMC2655873

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Bodenreider O, Burgun A. Oncologic Pathology in Biomedical Terminologies: Challenges for Data Integration Proc APIII conference on "Anatomic Pathology Informatics and Imaging Support for Translational Medicine", Pittsburgh, Pennsylvania, September 9-12, 2007:Abstract 342.

Abstract | pub2007050.pdf

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Zweigenbaum P, Demner-Fushman D, Yu H, Cohen KB. Frontiers of biomedical text mining: current progress Brief Bioinform. 2007 Sep;8(5):358-75. Epub 2007 Oct 30.

Abstract | pub2007005.pdf | PMID: 17977867 | PMCID: PMC2516302

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Sahoo S, Bodenreider O, Zeng K, Sheth AP. An Experiment in Integrationg Large Biomedical Knowledge Resources with RDF: Application to Associating Genotype and Phenotype Information Proc Workshop on Health Care and Life Sciences Data Integration for the Semantic Web at WWW2007 (electronic proceedings: http://www2007.org/workshops/paper_149.pdf)

Abstract | pub2007014.pdf

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Azuaje F, Wang H, Zheng H, Bodenreider O, Chesneau A. Predictive Integration of Gene Ontology-Driven Similarity and Functional Interactions Proc ICDM 2006, Workshop on Data Mining in Bioinformatics: IEEE Computer Society Press; 2006. p. 114 - 119

Abstract | pub2006064.pdf

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Mougin F, Burgun A, Bodenreider O. Using WordNet to Improve the Mapping of Data Elements to UMLS for Data Sources Integration AMIA Annu Symp Proc. 2006:574-8

Abstract | pub2006055.pdf | PMID: 17238406 | PMCID: PMC1839757

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Bodenreider O, Zhang S. Comparing the Representation of Anatomy in the FMA and SNOMED CT AMIA Annu Symp Proc. 2006:46-50

Abstract | pub2006054.pdf | PMID: 17238300 | PMCID: PMC1839313

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Bodenreider O. Lexical, Terminological and Ontological Resources for Biological Text Mining Ananiadou S, McNaught J, editors. Text mining for biology and biomedicine: Artech House; 2006. p. 43-66.

Abstract | pub2006007.pdf

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Huang X, Lin J, Demner-Fushman D. Evaluation of PICO as a knowledge representation for clinical questions AMIA Annu Symp Proc. 2006:359-63.

Abstract | pub2006038.pdf | PMID: 17238363 | PMCID: PMC1839740

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Mougin F, Bodenreider O. Comparing Two Approaches to Eliminating Cycles in Terminological Systems Proc RFIA 2006

Abstract | pub2006008.pdf

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Vizenor L, Bodenreider O, Peters L, McCray AT. Enhancing Biomedical Ontologies through Alignment of Semantic Relationships: Exploratory Approaches AMIA Annu Symp Proc. 2006:804-8.

Abstract | pub2006059.pdf | PMID: 17238452 | PMCID: PMC1839588

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Zeng K, Bodenreider O, Kilbourne J, Nelson SJ. RxNav: A Web Service for Standard Drug Information AMIA Annu Symp Proc. 2006:1156

Abstract | pub2006060.pdf | PMID: 17238775 | PMCID: PMC1839335

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Zhang S, Bodenreider O, Golbreich C. Experience in Reasoning with the Foundational Model of Anatomy in OWL DL Pac Symp Biocomput. 2006:200-11

Abstract | pub2006009.pdf | PMID: 17094240

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Zhang S, Bodenreider O. NLM Anatomical Ontology Alignment system: Results of the 2006 ontology alignment contest Proc OAEI 2006 2006:145-156

Abstract | pub2006061.pdf

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Fung KW, Hole WT, Srinivasan S. Who is using the UMLS and how - insights from the UMLS user annual reports. AMIA Annu Symp Proc. 2006:274-8.

Abstract | pub2006077.pdf | PMID: 17238346 | PMCID: PMC1839427

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Biondich PG, Downs SM, Carroll AE, Shiffman RN, McDonald CJ. Collaboration between the medical informatics community and guideline authors: fostering HIT standard development that matters. AMIA Annu Symp Proc. 2006:36-40.

Abstract | PMID: 17238298 | PMCID: PMC1839341

Abstract

Christensen JD, Hutchins GC, McDonald CJ. Computer automated detection of head orientation for prevention of wrong-side treatment errors. AMIA Annu Symp Proc. 2006:136-40.

Abstract | PMID: 17238318 | PMCID: PMC1839503

Abstract

Kroth PJ, Dexter PR, Overhage JM, Knipe C, Hui SL, Belsito A, McDonald CJ. A computerized decision support system improves the accuracy of temperature capture from nursing personnel at the bedside. AMIA Annu Symp Proc. 2006:444-8.

Abstract | PMID: 17238380 | PMCID: PMC1839332

Abstract

Vreeman DJ, McDonald CJ. A comparison of Intelligent Mapper and document similarity scores for mapping local radiology terms to LOINC. AMIA Annu Symp Proc. 2006:809-13.

Abstract | PMID: 17238345 | PMCID: PMC1839544

Abstract

Zhang S, Bodenreider O, Kantz N. Aligning Anatomical Ontologies: The Role of Complex Structural Rules IIAS-Transactions on Systems Research and Cybernetics - Proc InterSymp 2006;VI(2):27-32.

Abstract | pub2007010.pdf

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Demner-Fushman D, Humphrey SM, Ide NC, Loane RF, Ruch P, Ruiz ME, Smith LH, Tanabe LK, Wilbur WJ, Aronson AR. Finding Relevant Passages in Scientific Articles: Fusion of Automatic Approaches vs. an Interactive Team Effort. Proc TREC 2006, 569-76.

Abstract | pub2006072.pdf

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Bergun A, Bodenreider O. An ontology of chemical entities helps identify dependence relations among Gene Ontology terms Proc SMBM-2005

Abstract | pub2005028.pdf

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Bergun A, Bodenreider O, Mougin F. Classifying diseases with respect to anatomy: a study in SNOMED CT AMIA Annu Symp Proc. 2005:91-5

Abstract | pub2005030.pdf | PMID: 16779008 | PMCID: PMC1560776

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Bodenreider O, Burgun A. Linking the Gene Ontology to other biological ontologies Proc ISMB'2005 SIG meeting on Bio-ontologies 2005:17-18

Abstract | pub2005026.pdf

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Bodenreider O, Aubry M, Burgun A. Non-Lexical Approaches to Identifying Associative Relations in the Gene Ontology Pac Symp Biocomput. 2005:91-102

Abstract | pub2005006.pdf

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Crowell J, Zeng QT, Tse T. A Web Application to Support Consumer Health Vocabulary Development AMIA Annu Symp Proc. 2005:932

Abstract | pub2005043.pdf

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Fung KW, Bodenreider O. Utilizing the UMLS for Semantic Mapping between Terminologies. AMIA Annu Symp Proc. 2005:266-70.

Abstract | pub2005031.pdf | PMID: 16779043 | PMCID: PMC1560893

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Kayaalp M. Why Do We Need Probabilistic Approaches to Ontologies and the Associated Data? AMIA Annu Symp Proc. 2005:1005

Abstract | pub2005018.pdf | PMID: 16779292 | PMCID: PMC1560671

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Zeng K, Bodenreider O, Nelson SJ. RxNav: A Progress Report AMIA Annu Symp Proc 2005:1168

Abstract | pub2005038.pdf | PMID: 16779454 | PMCID: PMC1560640

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Zeng QT, Tse T, Crowell J, Divita G, Roth L, Browne AC. Identifying Consumer-Friendly Display (CFD) Names for Health Concepts AMIA Annu Symp Proc. 2005:859-63

Abstract | pub2005042.pdf | PMID: 16779162 | PMCID: PMC1560732

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Zhang S, Bodenreider O. Alignment of Multiple Ontologies of Anatomy: Deriving Indirect Mappings from Direct Mappings to a Reference AMIA Annu Symp Proc 2005:864-868

Abstract | pub2005039.pdf | PMID: 16779163 | PMCID: PMC1560629

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Bodenreider O, Hayamizu TF, Ringwald M, De Coronado S, Zhang S. Of mice and men: aligning mouse and human anatomies. AMIA Annu Symp Proc. 2005:61-5.

Abstract | pub2005027.pdf | PMID: 16779002 | PMCID: PMC1560846

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Golbreich C, Zhang S, Bodenreider O. Migrating the FMA from Protege to OWL Proc of the Eighth International Protege Conference 2005:108-111.

Abstract | pub2005032.pdf

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Zeng K, Bodenreider O, Nelson SJ. Implementing RxNav, a RxNorm Browser Proc of Medical Informatics Europe 2005 (CD-ROM) 2005:1268.

Abstract | pub2005037.pdf

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Demner-Fushman D, Hauser SE, Thoma GR. The role of title, metadata and abstract in identifying clinically relevant journal articles. AMIA Annu Symp Proc. 2005:191-5.

Abstract | pub2005046.pdf | PMID: 16779028 | PMCID: PMC1560462

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Lin J, Demner-Fushman D. "Bag of words" is not enough for strength of evidence classification AMIA Annu Symp Proc. 2005:1031.

Abstract | PMID: 16779318 | PMCID: PMC1560897

Abstract

Finnell JT, Overhage JM, McDonald CJ. In support of emergency department health information technology. AMIA Annu Symp Proc. 2005:246-50.

Abstract | PMID: 16779039 | PMCID: PMC1560807

Abstract

Kho A, Dexter P, Warvel J, Commiskey M, Wilson S, McDonald CJ. Computerized reminders to improve isolation rates of patients with drug-resistant infections: design and preliminary results. AMIA Annu Symp Proc. 2005:390-4.

Abstract | PMID: 16779068 | PMCID: PMC1560469

Abstract

Laflamme MR, Dexter PR, Graham MF, Hui SL, McDonald CJ. Efficiency, comprehensiveness and cost-effectiveness when comparing dictation and electronic templates for operative reports. AMIA Annu Symp Proc. 2005:425-9.

Abstract | PMID: 16779075 | PMCID: PMC1560865

Abstract

McDonald CJ, Dexter P, Schadow G, Chueh HC, Agernathy G, Hook J, Blevins L, Overhage JM, Berman JJ. SPIN query tools for de-identified research on a humongous database. AMIA Annu Symp Proc. 2005:515-9.

Abstract | PMID: 16779093 | PMCID: PMC1560587

Abstract

Vreeman DJ, McDonald CJ. Automated mapping of local radiology terms to LOINC. AMIA Annu Symp Proc. 2005:769-73.

Abstract | PMID: 16779144 | PMCID: PMC1560555

Abstract

Bodenreider O. Web Interface: RxNav

Abstract

Bodenreider O, Aubry M, Burgun A. From Functional Similarity Among Gene Products to Dependence Relations Among Gene Ontology Terms Proc SOFG, 2004:53.

Abstract | pub2004069.pdf

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Sehgal AK, Srinivasan P, Bodenreider O. Gene Terms and English Words: An Ambiguous Mix Proc of the SIGIR 2004 Workshop on Search and Discovery in Bioinformatics 2004.

Abstract | pub2004071.pdf

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McDonald CJ, Overhage JM, Mamlin BW, Dexter PD, Tierney WM. Physicians, information technology, and health care systems: a journey, not a destination [Letter]. J Am Med Inform Assoc. 2004 Mar-Apr;11(2):121-4.

Abstract | PMID: 15027445 | PMCID: PMC353017

Abstract

Hole WT, Carlsen BA, Tuttle MS, Srinivasan S, Lipow SS, Olson NE, Sheretz DD, Humphreys BL. Achieving "source transparency" in the UMLS Metathesaurus. Stud Health Technol Inform. 2004;107(Pt 1):371-5.

Abstract | pub2004-078.pdf | PMID: 15360837 | URL: http://ebooks.iospress.nl/publication/21007

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Azuaje FJ, Bodenreider O, Wang H, Dopazo J. Gene Ontology-Driven Similarity for Gene Expression Correlation Analysis Proceedings of the second conference on Standards and Ontologies for Functional Genomics (SOFG 2) 2004:47.

Abstract

Bodenreider O, Azuaje F. Incorporating Ontology-Driven Similarity Knowledge Into Functional Genomics: An Exploratory Study Proceedings of the 2004 IEEE Fourth Symposium on Bioinformatics and Bioengineering (BIBE-2004) 2004:317-324.

Abstract | pub2004066.pdf

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Bodenreider O, Smith B, Burugn A. The Ontology-Epistemology Divide: A Case Study in Medical Terminology Proceedings of the Third International Conference on Formal Ontology in Information Systems (FOIS2004): IOS Press; 2004. p. 185-195.

Abstract | pub2004064.pdf

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Wang H, Azuaje F, Bodenreider O, Dopazo J. Gene Expression Correlation and Gene Ontology-Based Similarity: An Assessment of Quantitative Relationships Proceedings of the 2004 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB'2004) 2004:25-31.

Abstract | pub2004065.pdf

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Bangalore A, Thorn KE, Tilley C, Peters L. The UMLS knowledge source server: an object model for delivering UMLS data. AMIA Annu Symp Proc. 2003 Nov;:51-55.

Abstract | pub2003052.pdf | PMID: 14728132 | PMCID: PMC1480045

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Bodenreider O, Mitchell JA. Graphical Visualization and Navigation of Genetic Disease Information AMIA Annu Symp Proc. 2003:792.

Abstract | pub2003054.pdf | PMID: 14728297 | PMCID: PMC1479900

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Bodenreider O. Strength in Numbers: Exploring Redundancy in Hierarchical Relations Across Biomedical Terminologies AMIA Annu Symp Proc. 2003:101-5.

Abstract | pub2003053.pdf | PMID: 14728142 | PMCID: PMC1480297

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Zhang S, Bodenreider O. Aligning Representations of Anatomy Using Lexical and Structural Methods AMIA Annu Symp Proc. 2003 Nov;:753-757.

Abstract | pub2003063.pdf | PMID: 14728274 | PMCID: PMC1480279

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Biondich PG, Anand V, Downd SM, McDonald CJ. Using adaptive turnaround documents to electronically acquire structured data in clinical settings. AMIA Annu Symp Proc. 2003:86-90.

Abstract | PMID: 14728139 | PMCID: PMC1480055

Abstract

Grannis SJ, Overhage JM, Hui S, McDonald CJ. Analysis of a probabilistic record linkage technique without human review. AMIA Annu Symp Proc. 2003:259-63.

Abstract | PMID: 14728174 | PMCID: PMC1479910

Abstract

Mamlin BW, Heinze DT, McDonald CJ. Automated extraction and normalization of findings from cancer-related free-text radiology reports. AMIA Annu Symp Proc. 2003:420-4.

Abstract | PMID: 14728207 | PMCID: PMC1479955

Abstract

Schadow G, McDonald CJ. Extracting structured information from free text pathology reports. AMIA Annu Symp Proc. 2003:584-8.

Abstract | PMID: 14728240 | PMCID: PMC1480213

Abstract

Weiner M, Schadow G, Lindbergh D, Warvel J, Abernathy G, Perkins SM, Fyffe J, Dexter PR, McDonald CJ. Clinicians' and patients' experiences and satisfaction with unscheduled, nighttime, Internet-based video conferencing for assessing acute medical problems in a nursing facility. AMIA Annu Symp Proc. 2003:709-13.

Abstract | PMID: 14728265 | PMCID: PMC1480309

Abstract

Bodenreider O. A Semantic Navigation Tool for the UMLS AMIA Annu Symp Proc. 2000;: 971.

Abstract | pub2000035.pdf

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Bodenreider O. Comment les Usagers Accedent a l'Information Medicale Aux USA: l'Exemple de MEDLINEplus [How Consumers Access Health Information in the USA: The MEDLINEplus Example] Innovation et Technologie en Biologie et Medecine. 2000;21(5):286-90.

Abstract | pub2000036.pdf

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Bodenreider O, Mitchell JA, McCray AT. Evaluation of the UMLS as a Terminology and Knowledge Resource for Biomedical Informatics Proc AMIA Symp. 2002:61-65.

Abstract | pub2002026.pdf | PMID: 12463787 | PMCID: PMC2244306

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Bodenreider O, Zweigenbaum P. Strategies d'Identification des Noms Propres a Partir de Nomenclatures Medicales Paralleles Traitement Automatique des Langues. 2000;41(3):727-757.

Abstract | pub2000037.pdf

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Botti G, Bodenreider O, Burgun A, Le Beux P, Fieschi M. De la Classification à la Connaissance des Maladies: Une Réflexion à Partir de la Classification Internationale des Maladies [From Classification to Knowledge About Diseases: Thoughts about the International Classification of Diseases] Innovation et Technologie en Biologie et Médecine. 2000;21(5):291-97.

Abstract

Jacquelinet C, Bodenreider O, Burgun A. Modelling Syllepse in Medical Knowledge Bases with Application in the Domain of Organ Failure and Transplantation Proc. of OntoLex; Workshop on Ontologies and Lexical Knowledge Bases 2000.

Abstract | pub2000040.pdf

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Mitchell JA, McCray AT, Bodenreider O. From Phenotype to Genotype: Navigating the Available Information Resources Proc AMIA Symp. 2002;:1109.

Abstract | pub2002031.pdf

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Nelson SJ, Brown SH, Erlbaum MS, Olson N, Powell T, Carlsen B, Carter J, Tuttle MS, Hole WT. A semantic normal form for clinical drugs in the UMLS: early experiences with the VANDF. Proc AMIA Symp. 2002:557-61.

Abstract | pub2002037.pdf | PMID: 12463886 | PMCID: PMC2244318

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Powell T, Srinivasan S, Nelson SJ, Hole WT, Roth L, Olenichev V. Tracking meaning over time in the UMLS Metathesaurus. Proc AMIA Symp. 2002:622-6.

Abstract | pub2002036.pdf | PMID: 12463898 | PMCID: PMC2244380

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Tringali M, Hole WT, Srinivasan S. Integration of a standard gastrointestinal endoscopy terminology in the UMLS Metathesaurus.the UMLS Metathesaurus Proc AMIA Symp. 2002:801-5.

Abstract | pub2002035.pdf | PMID: 12463935 | PMCID: PMC2244533

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Biondich PG, Overhage JM, Dexter PR, Downs SM, Lemmon L, McDonald CJ. A modern optical character recognition system in a real world clinical setting: some accuracy and feasibility observations. Proc AMIA Symp. 2002:56-60.

Abstract | PMID: 12463786 | PMCID: PMC2244242

Abstract

Grannis SJ, Overhage JM, McDonald CJ. Analysis of identifier performance using a deterministic linkage algorithm. Proc AMIA Symp. 2002:305-9.

Abstract | PMID: 12463836 | PMCID: PMC2244404

Abstract

Thomas SM, Mamlin B, Schadow G, McDonald CJ. A successful technique for removing names in pathology reports using an augmented search and replace method. Proc AMIA Symp. 2002:777-81.

Abstract | PMID: 12463930 | PMCID: PMC2244188

Abstract

Weiner M, Schadow G, Lindbergh D, Warvel J, Abernathy G, Perkins SM, Dexter PR, McDonald CJ. Conducting a study of Internet-based video conferencing for assessing acute medical problems in a nursing facility. Proc AMIA Symp. 2002:874-8.

Abstract | PMID: 12463950 | PMCID: PMC2244471

Abstract

Schadow G, Grannis S, McDonald CJ. Privacy-Preserving Distributed Queries for a Clinical Case Research Network. IEEE International Conference on Data Mining Workshop on Privacy, Security, and Data Mining City: Maebashi City, Japan 2002 vol: 14 pp: 55-65.

Abstract | pub9700.pdf

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Bodenreider O. Circular hierarchical relationships in the UMLS: etiology, diagnosis, treatment, complications and prevention. Proc AMIA Symp. 2001:57-61.

Abstract | pub2001023.pdf | PMID: 11825155 | PMCID: PMC2243677

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Bodenreider O, Zweigenbaum P. Identifying Proper Names in Parallel Medical Terminologies Stud Health Technol Inform. 2000;77:443-7

Abstract | pub2000038.pdf | PMID: 11187591 | PMCID: PMC1790050

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Kroth PJ, Belsito A, Overhage JM, McDonald CJ. Bedside vital signs capture for the non-ICU setting--an open source, PC-based solution. Proc AMIA Symp. 2001:344-8.

Abstract | PMID: 11825208 | PMCID: PMC2243526

Abstract

Overhage JM, Aisen A, Barnes M, Tucker M, McDonald CJ. Integration of radiographic images with an electronic medical record. Proc AMIA Symp. 2001:513-7.

Abstract | PMID: 11825241 | PMCID: PMC2243643

Abstract

Schadow G, Barnes MR, McDonald CJ. Representing and querying conceptual graphs with relational database management systems is possible. Proc AMIA Symp. 2001:598-602.

Abstract | PMID: 11825256 | PMCID: PMC2243450

Abstract

Thomas SM, Overhage JM, Warvel J, McDonald CJ. A comparison of a printed patient summary document with its electronic equivalent: early results. Proc AMIA Symp. 2001:701-5.

Abstract | PMID: 11825276 | PMCID: PMC2243457

Abstract

Bodenreider O. Using UMLS semantics for classification purposes. Proc AMIA Symp. 2000:86-90.

Abstract | pub2000034.pdf | PMID: 11079850 | PMCID: PMC2243905

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Schadow G, Russler DC, Mead CN, McDonald CJ. Integrating medical information and knowledge in the HL7 RIM. Proc AMIA Symp. 2000:764-8.

Abstract | PMID: 11079987 | PMCID: PMC2243789

Abstract

McDonald CJ, Schadow G, Suico J, Heilmann K. Sprechen Sie LOINC. HL7 Mitteilugen, Germany. 2000. P 6-11.

Abstract | pub9721.pdf

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Ackerman MJ. Electronics and Health Care Revisited: Thirty-Eight Years Later. Proc IEEE. 2000;88(5):706-7. DOI: 10.1109/5.849172.

Abstract | pub2000002.pdf

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Russler DC, Schadow G, Mead C, Snyder T, Quade LM, McDonald CJ. Influences of the Unified Service Action Model on the HL7 Reference Information Model. Proc AMIA Symp. 1999:930-4.

Abstract | PMID: 10566497 | PMCID: PMC2232835

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