• McDonald CJ, Maglott D, Abhyankar S, Goodwin RM, Kanduru A, Lu S, Lynch P, Vreeman D, Wang Y, Wood G. US Realm, Chapter 14, Use Case – Clinical Genomics Code Systems. in HL7 Version 2.5.1 Implementation Guide: Lab Results Interface (LRI), DTSU3. HL7 International (Ann Arbor).

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• McDonald CJ, Maglott D, Abhyankar S, Goodwin RM, Kanduru A, Lu S, Lynch P, Vreeman D, Wang Y, Wood G. US Realm, Chapter 5, Use Case – Clinical Genomics Results Reporting in HL7 Version 2.5.1 Implementation Guide: Lab Results Interface (LRI), DTSU3. HL7 International (Ann Arbor).

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• McDonald CJ. Logical Observation Identifiers Names and Codes for In Vitro Diagnostic Test; Guidance for Industry and Food and Drug Administration Staff. Silver Spring, Md: Center for Devices and Radiological Health, FDA, 2018.

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• Tang P, McDonald CJ. Computer-Based Patient-Record Systems - Chapter 9. In Shortliffe E, Perreault L, eds. Medical Informatics. New York: springer. 2001:327-358. DOI: 10.1007/978-0-387-21721-5_9.

  Abstract | pub9718.pdf

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• McDonald CJ. Top LOINC Codes – Orders and Observations

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• Abhyankar S, Schluter P, Bennett K, Vreeman D, McDonald CJ. Enabling Interoperability between Healthcare Devices and EHR Systems. In 2017 AMIA Symposium. Wasington DC: IEEE.

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• McDonald CJ, Vreeman D, Wang K, Carr C, Colins B, Abhyankar S, Deckard J, Rubin D, Langlotz C. The LOINC/RSNA Radiology Playbook: A unified terminology for radiology procedures. . In 2017 AMIA Symposium. Washington DC.

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• Ash J, Sittig D. Everything Electronic Medical Records: Systems, Standards and Studies Conversations with Medical Informatics Pioneers: An oral history project.

  Abstract | pub9505.pdf

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• Kury F, Baik SH, McDonald CJ. Analysis of Healthcare Cost and Utilization in the First Two Years of the Medicare Shared Savings Program Using Big Data from the CMS Enclave. AMIA Annu Symp Proc. 2017 Feb 10;2016:724-733. eCollection 2016.

  Abstract | PMID:  28698770 | PMCID:  PMC5493183

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• Cimino JJ, Huser V. Characterization of the Context of Drug Concepts in Research Protocols: An Empiric Study to Guide Ontology Development. AMIA Annu Symp Proc. 2015 Nov 5;2015:441-7. eCollection 2015.

  Abstract | PMID:  26958176 | PMCID:  PMC4765569

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• Kayaalp M, Browne AC, Sagan P, McGee T, McDonald CJ. Challenges and Insights in Using HIPAA Privacy Rule for Clinical Text Annotation. AMIA Annu Symp Proc. 2015 Nov 5;2015:707-16. eCollection 2015.

  Abstract | PMID:  26958206 | PMCID:  PMC4765667

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• Pan X, Cimino JJ. Identifying the Clinical Laboratory Tests from Unspecified "Other Lab Test" Data for Secondary Use. AMIA Annu Symp Proc. 2015 Nov 5;2015:1018-23. eCollection 2015.

  Abstract | PMID:  26958239 | PMCID:  PMC4765675

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• Detmer DE, Ash JS (Interviewer and Editor), Sittig DF (Interviewer and Editor), Goodwin RM (Editor). Fostering Health Policy and the Biomedical Informatics Profession: 2006 Interview of Don Detmer. Conversations with Medical Informatics Pioneers: An oral history project.

  Abstract | Medical-Informatics-Pioneers_Oral-History_DON-DETMER_2015-08-19_web.pdf

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• Matheson NW, Ash JS (Interviewer and Editor), Sittig DF (Interviewer and Editor), Goodwin RM (Editor). The Woman Behind the NLM’s Integrated Advanced Information Management Systems (IAIMS) Initiative: 2005 Interview of Nina Matheson. Conversations with Medical Informatics Pioneers: An oral history project.

  Abstract | Medical-Informatics-Pioneers_Oral-History_NINA-MATHESON_2015-08-19_web.pdf

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• Barnett GO, Ash JS (Interviewer and Editor), Sittig DF (Interviewer and Editor), Goodwin RM (Editor). From "Farm Boy" to Director of the Laboratory of Computer Science: 2004 Interview of G. Octo Barnett Conversations with Medical Informatics Pioneers: An oral history project.

  Abstract | Medical-Informatics-Pioneers_Oral-History_OCTO-BARNETT_2015-09-04_web.pdf

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• Warner HR, Sittig DF (Interviewer and Editor), Ash JS (Editor), Goodwin RM (Editor). Founder of the HELP System and the Utah Medical Informatics Program: 2005 Interview of Homer R. Warner, Sr. Conversations with Medical Informatics Pioneers: An oral history project.

  Abstract | Medical-Informatics-Pioneers_Oral-History_HOMER-WARNER_2015-09-04_web.pdf

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• Ash JS (Interviewer and Editor), Sittig DF (Interviewer and Editor), Goodwin RM (Editor). Introduction Conversations with Medical Informatics Pioneers: An oral history project.

  Abstract | Medical-Informatics-Pioneers_Oral-History_INTRODUCTION_2015-09-01_web.pdf

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• Lindberg, DAB, Ash JS (Interviewer and Editor), Sittig DF (Interviewer and Editor), Goodwin RM (Editor). At the helm of the world's largest biomedical library: 2005 Interviews with Donald A.B. Lindberg, MD Conversations with Medical Informatics Pioneers: An oral history project.

  Abstract | Medical-Informatics-Pioneers_Oral-History_DONALD-LINDBERG_2015-09-04_web.pdf

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• Cimino JJ, Remennick L. Adapting a Clinical Data Repository to ICD-10-CM through the use of a Terminology Repository. AMIA Annu Symp Proc. 2014 Nov 14;2014:405-13. eCollection 2014.

  Abstract | PMID:  25954344 | PMCID:  PMC4419915

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• Pan X, Cimino JJ. Locating relevant patient information in electronic health record data using representations of clinical concepts and database structures. AMIA Annu Symp Proc. 2014 Nov 14;2014:969-75. eCollection 2014.

  Abstract | PMID:  25954405 | PMCID:  PMC4419946

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• Collen MF, Sittig DF (Interviewer and Editor), Ash JS (Editor), Goodwin RM (Editor). Engineering Computerized Multiphasic Health Screening: 2005 Interview of Morris F. Collen, MD. Conversations with Medical Informatics Pioneers: An oral history project.

  Abstract | Medical-Informatics-Pioneers_Oral-History_MORRIS-COLLEN_2015-09-04_web.pdf

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• McDonald CJ, Tang PC, Hripcsak G. Electronic Health Record Systems. . In: Shortliffe EH, Cimino JJ, editors. Biomedical Informatics: Computer Applications in Healthcare and Biomedicine 4th ED [Internet]. London: Springer London; 2014. p. 391–421. Available from: http://link.springer.com/10.1007/978-1-4471-4474-8.

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• Cimino JJ, Overby CL, Devine EB, Hulse NC, Jing X, Maviglia SM, Del Fiol G. Practical choices for infobutton customization: experience from four sites. AMIA Annu Symp Proc. 2013 Nov 16;2013:236-45. eCollection 2013.

  Abstract | PMID:  24551334 | PMCID:  PMC3900175

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• Huser V, Cimino JJ. Desiderata for healthcare integrated data repositories based on architectural comparison of three public repositories. AMIA Annu Symp Proc. 2013 Nov 16;2013:648-56. eCollection 2013.

  Abstract | PMID:  24551366 | PMCID:  PMC3900207

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• Callaghan F, Jackson MT, Demner-Fushman D, Abhyankar S, McDonald C. Analysis of data that has been extracted from free-text using natural language processing: a likelihood model for misclassification with an application to medical informatics. International Conference on Advances in Interdisciplinary Statistics and Combinatorics (AISC2012), Greensboro, NC, October 2012

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• Callaghan F, Jackson MT, Demner-Fushman D, Abhyankar S, McDonald CJ. NLP-derived information improves the estimates of risk of disease compared to estimates based on manually extracted data alone. 5th International Symposium on Semantic Mining in Biomedicine (SMBM 2012), 2012 Sept 3-4, Zurich, Switzerland.

  Abstract | pub2012-068.pdf | URL:  http://www.zora.uzh.ch/64476/65/smbm12.pdf

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• Tse T, Zarin D, Williams R, Ide N. The role and importance of clinical trial registries and results databases In: Gallin JI, Ognibene FP, eds, Principles and Practice of Clinical Research. 3rd ed. Amsterdam: Academic Press; 2012: 171-81.

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• McDonald CJ, Vreeman D, Goodwin RM. Dataset: LOINC Top 2000+ Lab Observations and Mapper's Guide

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• Cimino J, Jing X, Del Fiol G. Meeting the electronic health record "meaningful use" criterion for the HL7 infobutton standard using OpenInfobutton and the Librarian Infobutton Tailoring Environment (LITE). AMIA Annu Symp Proc. 2012;2012:112-20. Epub 2012 Nov 3.

  Abstract | PMID:  23304279 | PMCID:  PMC3540503

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• Goodwin RM, Abhyankar S, Zuckerman AE, Copeland SM, Sarkar D, Cuthbert C, Therrell BL, Ojodu J, Lloyd-Puryear MA, Jenders RA, McDonald CJ. Newborn screening health information exchange: updated guidance for coding and HL7 electronic messaging. APHL Newborn Screening and Genetics Testing Symposium. 2011 Nov 7.

  Abstract | pub2011-007.pdf | URL:  http://www.aphl.org/conferences/proceedings/Documents/2011/2011_APHL_NBS_Genetic...

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• Abhyankar S, Goodwin RM, Zuckerman A, McDonald CJ. Dataset: newborn screening results annotated example HL7 electronic message guidance (v 5.2).

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• Abhyankar S, Therrell B, Eaton R, Cuthbert C, Ojodu J, Copeland S, Goodwin RM, McDonald C. Using LOINC and HL7 to standardize hemoglobinopathy screening result reporting. APHL Newborn Screening and Genetics Testing Symposium. 2011 Nov 7.

  Abstract | pub2011-133.pdf | URL:  http://www.aphl.org/conferences/proceedings/Documents/2011/2011_APHL_NBS_Genetic...

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• Abhyankar S, Goodwin RM, Zuckerman AE, McDonald CJ. Dataset: Newborn screening LOINC panel.

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• Abhyankar S, Goodwin RM, Zuckerman AE, McDonald CJ. Dataset: newborn screening LOINC codes (AHIC panel).

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• McDonald CJ, Abhyankar S, Taft L. Dataset: common units of measure - subset of the Unified Code for Units of Measure.

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• McDonald C, Vreeman D, Goodwin RM. Dataset: LOINC Top 300+ Lab Orders

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• Jing X, Cimino JJ. Graphical methods for reducing, visualizing and analyzing large data sets using hierarchical terminologies. AMIA Annu Symp Proc. 2011;2011:635-43. Epub 2011 Oct 22.

  Abstract | PMID:  22195119 | PMCID:  PMC3243153

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• Abhyankar S, Lloyd-Puryear MA, Goodwin R, Copeland S, Eichwald J, Therrell BL, Zuckerman A, Downing G, McDonald CJ. Standardizing newborn screening results for health information exchange. AMIA Annu Symp Proc. 2010 Nov 13;2010:1-5.

  Abstract | pub2010037.pdf | PMID:  21346929 | PMCID:  PMC3041276

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• Lin M-C, Vreeman DJ, McDonald CJ, Huff SM. Correctness of Voluntary LOINC Mapping for Laboratory Tests in Three Large Institutions. AMIA Annu Symp Proc. 2010 Nov 13;2010:447-51.

  Abstract | pub2010042.pdf | PMID:  21347018 | PMCID:  PMC3041457

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• Vreeman DJ, McDonald CJ, Huff SM. Representing Patient Assessments in LOINC®. AMIA Annu Symp Proc. 2010 Nov 13;2010:832-6.

  Abstract | pub2010041.pdf | PMID:  21347095 | PMCID:  PMC3041404

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• Zuckerman AE, Downs SM, McDonald CJ, Weisman JL, Ross DA. Newborn Screening as the Model for Interoperable Genetic Data AMIA Annu Symp Proc. 2010

  Abstract | pub2010035.pdf

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• Fiszman M, Bray B, Shin D, Kilicoglu H, Bennett GC, Bodenreider O, Rindflesch TC. Combining relevance assignment with quality of the evidence to support guideline development. Stud Health Technol Inform. 2010;160(Pt 1):709-13.

  Abstract | pub2010008.pdf | PMID:  20841778

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• Cimino JJ. The contribution of observational studies and clinical context information for guiding the integration of infobuttons into clinical information systems. AMIA Annu Symp Proc. 2009 Nov 14;2009:109-13.

  Abstract | PMID:  20351832 | PMCID:  PMC2815416

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• Haerian K, McKeeby J, DiPatrizio G, Cimino JJ. Use of clinical alerting to improve the collection of clinical research data. AMIA Annu Symp Proc. 2009 Nov 14;2009:218-22.

  Abstract | PMID:  20351853 | PMCID:  PMC2815392

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• McDonald CJ, Fung K, Wang Y, Lynch P, Hook J, Vreeman D. Towards a standardized HL7 clinical data capture tool – with a trial implementation in NLM’s personal health record. 10th International HL7 Interoperability Conference. May 2009.

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• McDonald CJ, Hill G. IUPAC Silver Book- Compendium of Terminology and Nomenclature of Properties in Clinical Laboratory Sciences - Chapter 8 - Kinds-of-Quantity of Dimension One. SI Unit 1. Royal Society of Chemistry; 2009. doi:10.1039/978178262245.1-00075.

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• Fiszman M, Ortiz E, Bray BE, Rindflesch TC. Semantic Processing to Support Clinical Guideline Development AMIA Annu Symp Proc. 2008 Nov 6:187-91

  Abstract | PMID:  18999127 | PMCID:  PMC2656081

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• Fung KW, McDonald C, Bray BE. RxTerms - a drug interface terminology derived from RxNorm. AMIA Annu Symp Proc. 2008 Nov 6:227-31

  Abstract | PMID:  18998891 | PMCID:  PMC2655997

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• Patel CO, Cimino JJ. Using Semantic and Structural Properties of the UMLS to Discover Potential Terminological Relationships AMIA Annu Symp Proc. 2008 Nov 6:555.

  Abstract | PMID:  18999270 | PMCID:  PMC2656063

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• McDonald C. Dataset: LOINC Panels and Forms file

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