Abhyankar S, Vreeman DJ, Westra BL, Delaney CW.Comments on the Use of LOINC and SNOMED CT for Representing Nursing Data [Letter]. Int J Nurs Knowl. 2017 Aug 30. doi: 10.1111/2047-3095.12183. [Epub ahead of print]
Abhyankar S, Demner-Fushman D.A simple method to extract key maternal data from neonatal clinical notes. AMIA Annu Symp Proc. 2013 Nov 16;2013:2-9. eCollection 2013.
Abhyankar S, Lloyd-Puryear MA, Goodwin R, Copeland S, Eichwald J, Therrell BL, Zuckerman A, Downing G, McDonald CJ.Standardizing newborn screening results for health information exchange. AMIA Annu Symp Proc. 2010 Nov 13;2010:1-5.
Ackerman MJ, Yoo T, Jenkins D.From Data to Knowledge - The Visible Human Project Continues. In: Patel VL, Rogers R, Haux R, editors. Stud Health Technol Inform [Studies in Health Technology and Informatics] – MEDINFO 2001: Proceedings of the 10th World Congress on Medical Informatics (2001 Sep 2-5; London);84(Part II):887-90. Amsterdam: IOS Press.
Ackerman MJ, Yoo T, Jenkins D.The Visible Human Project: From Data to Knowledge. In: Lemke HU, Vannier MW, Inamura K, Farman AG, Doi K, editors. Proceedings of the 14th International Congress and Exhibition of Computer Assisted Radiology and Surgery (CARS2000); 2000 Jun 28-Jul 1; San Francisco. Amsterdam: Elsevier; 2000 Jun 1. p. 11-6.
Ahlers C, Fiszman M, Demner-Fushman D, Lang F, Rindflesch TC.Extracting Semantic Predications from MEDLINE Citations for Pharmacogenomics Pacific Symposium on Biocomputing 2007 12:209-220
Ahlers CB, Hristovski D, Kilicoglu H, Rindflesch TC.Using the Literature-based Discovery Paradigm to Investigate Drug Mechanisms AMIA Annu Symp Proc. 2007 Oct 11:6-10
An L, Obradovic Z, Smith D, Bodenreider O, Megalooikonomou V.Mining Association Rules among Gene Functions in Clusters of Similar Gene Expression Maps. Workshop proceedings of the IEEE International Conference on Bioinformatics and Biomedicine (BIBM09) -- Workshop on Data Mining in Functional Genomics 2009: p. 254-259
Antani S, Xue Z, Long LR, Bennett D, Ward S, Thoma GR.Is there a need for biomedical CBIR systems in clinical practice? Outcomes from a usability study. Proceedings of SPIE Medical Imaging 2011: Advanced PACS-based Imaging Informatics and Therapeutic Applications. Orlando, FL. February 2011;7967:796708.
Antani S, Cheng J, Long J, Long LR, Thoma GR.Medical Validation and CBIR of Spine X-ray Images over the Internet Proc IS and T/SPIE Electronic Imaging Science and Technology 2006: Internet Imaging VII. San Jose. CA Jan 15-19, 2006, SPIE Vol. 6061 pp. 60610J (1-9).
Antani SK, You D, Simpson M, Rahman M, Demner-Fushman D, Thoma GR.The role of image modality and visual characteristics in archiving biomedical images. Proc of IS&T Archiving Conference. Volume 2013, Number 1, 2013, pp. 31-35.
Antani SK, Demner-Fushman D, Li J, Srinivasan BV, Thoma GR.Exploring Use of Images in Clinical Articles for Decision Support in Evidence-Based Medicine Proc. SPIE-IS/T Electronic Imaging. San Jose, CA. January 2008;6815:68150Q(1-10)
Antani SK, Deserno TM, Long LR, Guld MO, Neve L, Thoma GR.Interfacing Global and Local CBIR Systems for Medical Image Retrieval Proc Workshop on Medical Imaging Research (Bildverarbeitung fur die Medizin). March 2007; 166-71.
Antani SK, Natarajan M, Long JL, Long RL, Thoma GR.Developing a Comprehensive System for Content-based Image Retrieval of Image and Text from a National Survey SPIE Medical Imaging, February 2005; San Diego, CA; vol. 5748:152-161.
Apostolova E, Channin DS, Demner-Fushman D, Furst J, Lytinen S, Raicu D.Automatic segmentation of clinical texts. 2009 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Minneapolis, MN, 2009, pp. 5905-5908. doi: 10.1109/IEMBS.2009.5334831
Armstrong K, Liu F, Seymour A, Mazhani L, Littman-Quinn R, Fontelo P, Kovarik C.Evaluation of txt2MEDLINE and development of short messaging service-optimized, clinical practice guidelines in Botswana. Telemed J E Health. 2012 Jan-Feb;18(1):14-7. doi: 10.1089/tmj.2011.0014. Epub 2011 Dec 7.
Armstrong K, Liu F, Seymour A, Rahman M, Fontelo P, Kovarik C.Design and Evaluation of txt2MEDLINE and SMS Optimized, Searchable Clinical Guidelines for Clinicians in Botswana. Telemedicine J E Health;16(S1):S-93. American Telemedicine Association 15th Annual International Meeting and Exposition; 2010 May 16-18; San Antonio, Texas.
Aronson AR, Mork JG, Neveol A, Shooshan SE, Demner-Fushman D.Methodology for Creating UMLS Content Views Appropriate for Biomedical Natural Language Processing AMIA Annu Symp Proc. 2008 Nov 6:21-5
Aronson AR, Bodenreider O, Demner-Fushman D, Fung KW, Lee VK, Mork JG, Névéol A, Peters L, Rogers WJ.From indexing the biomedical literature to coding clinical text: experience with MTI and machine learning approaches. Proc 2007 Workshop BioNL'07, June 2007, pp. 105-112, Prague, Czech Republic.
Aronson AR, Demner-Fushman D, Humphrey SM, Lin J, Liu H, Ruch P, Ruiz ME, Smith LH, Tanabe LK, Wilbur WJ.Fusion of Knowledge-intensive and Statistical Approaches for Retrieving and Annotating Textual Genomics Documents Proc TREC 2005, 36-45
Aronson AR, Demner-Fushman D, Humphrey SM, Ide NC, Kim W, Liu H, Loane RF, Mork JG, Smith LH, Tanabe LK, Wilbur WJ, Xie N.Knowledge-intensive and statistical approaches to the retrieval and annotation of genomics MEDLINE citations. The Thirteenth Text Retrieval Conference (TREC 2004). 2004:503-11.
Azuaje F, Wang H, Zheng H, Bodenreider O, Chesneau A.Predictive Integration of Gene Ontology-Driven Similarity and Functional Interactions Proc ICDM 2006, Workshop on Data Mining in Bioinformatics: IEEE Computer Society Press; 2006. p. 114 - 119
Azuaje FJ, Bodenreider O, Wang H, Dopazo J.Gene Ontology-Driven Similarity for Gene Expression Correlation Analysis Proceedings of the second conference on Standards and Ontologies for Functional Genomics (SOFG 2) 2004:47.
Bahr NJ, Nelson SD, Winnenburg R, Bodenreider O.Eliciting the Intension of Drug Value Sets - Principles and Quality Assurance Applications. Stud Health Technol Inform. 2017;245:843-847.
Bakker TA, Ryce AN, Logan RA, Tse T, Hutcherson LY.A Consumer Health Informatics (CHI) Toolbox: Challenges and Implications AMIA Annu Symp Proc. 2005:21-5
Banez RJ, Sarmiento R, Marcelo A, Fontelo P, Du B.An SMS Appointment Reminder System for Prenatal Care in Urban Health Care Centers in the Philippines. Telemed J E Health;16(S1):S-38. American Telemedicine Association 15th Annual International Meeting and Exposition; 2010 May 16-18; San Antonio, Texas.
Bangalore A, Thorn KE, Tilley C, Peters L.The UMLS knowledge source server: an object model for delivering UMLS data. AMIA Annu Symp Proc. 2003 Nov;:51-55.
Bangalore AK, Sood AK.Securing web servers using self-cleansing intrusion tolerance (SCIT). 2009 Second International Conference on Dependability. 2009:60-5.
Bangalore AK, Divita G, Humphrey SM, Browne AC, Thorn KE.Automatic Categorization of Google Search Results for Medical Queries using JDI Medinfo 2007: Proc. of the 11th World Congress on Health (Medical) Informatics
Ben Abacha A, Demner-Fushman D.On the Role of Question Summarization and Information Source Restriction in Consumer Health Question Answering. Proceedings of the AMIA 2019 Informatics Summit, San Francisco, CA, USA, March 25-28, 2019.
Ben Abacha A, Demner-Fushman D.On the role of question summarization and information source restriction in consumer health question answering. In Proceedings of the AMIA 2019 Informatics Summit, San Francisco, CA, USA, 2019.
Ben Abacha A, Gayen S, Lau JJ, Rajaraman S, Demner-Fushman D.NLM at ImageCLEF 2018 Visual Question Answering in the Medical Domain. CLEF2018 Working Notes. CEUR Workshop Proceedings, Avignon, France, CEUR-WS.org (September 10-14 2018).
Ben Abacha A, De Herrera A, Gayen S, Demner-Fushman D, Antani SK.NLM at ImageCLEF 2017 Caption Task. International Conference of the Cross-Language Evaluation Forum for European Languages 2017 Sep 11 (pp. 358-360). Springer, Cham.
Ben Abacha A, Demner-Fushman D.Recognizing Question Entailment for Medical Question Answering. AMIA Annu Symp Proc. 2017 Feb 10;2016:310-318. eCollection 2016.
Ben Abacha A.NLM_NIH at TREC 2016 Clinical Decision Support Track. Proceedings of TREC 2016, the 25th Text Retrieval Conference, Gaithersburg, MD, USA, November 2016.
Ben Abacha A, Demner-Fushman D.NLM_NIH at SemEval-2017 Task 3: from Question Entailment to Question Similarity for Community Question Answering. In Proceedings of the 11th International Workshop on Semantic Evaluation (SemEval@ACL) 2017: 349-352.
Ben Abacha A, de Herrera A, Wang Ke, Long LR, Antani SK, Demner-Fushman D.Named entity recognition in functional neuroimaging literature. 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Kansas City, MO, 2017, pp. 2218-2220.
Biondich PG, Downs SM, Carroll AE, Shiffman RN, McDonald CJ.Collaboration between the medical informatics community and guideline authors: fostering HIT standard development that matters. AMIA Annu Symp Proc. 2006:36-40.
Biondich PG, Anand V, Downd SM, McDonald CJ.Using adaptive turnaround documents to electronically acquire structured data in clinical settings. AMIA Annu Symp Proc. 2003:86-90.
Biondich PG, Overhage JM, Dexter PR, Downs SM, Lemmon L, McDonald CJ.A modern optical character recognition system in a real world clinical setting: some accuracy and feasibility observations. Proc AMIA Symp. 2002:56-60.
Bodenreider O.Identifying missing hierarchical relations in SNOMED CT from logical definitions based on the lexical features of concept names. Proceedings of the 6th International Conference on Biomedical Ontology (ICBO 2016), 2016: p. (electronic proceedings: http://ceur-ws.org/Vol-1747/IT601_ICBO2016.pdf).
Bodenreider O, Rodriguez L.Analyzing U.S. prescription lists with RxNorm and the ATC/DDD Index. AMIA Annu Symp Proc. 2014 Nov 14;2014:297-306. eCollection 2014.
Bodenreider O, Demner-Fushman D.Investigating drug classes in biomedical terminologies from the perspective of clinical decision support. AMIA Annu Symp Proc. 2010 Nov 13;2010:56-60.
Bodenreider O, Mougin F, Burgun A.Automatic Determination of Anti-coagulation Status with NDF-RT Proceedings of the 13th ISMB'2010 SIG meeting Bio-ontologies 2010:140-143
Bodenreider O.Using SNOMED CT in combination with MedDRA for reporting signal detection and adverse drug reactions reporting. AMIA Annu Symp Proc. 2009 Nov 14;2009:45-9.
Bodenreider O.Provenance information in biomedical knowledge repositories – A use case. Proceedings of the First International Workshop on the role of Semantic Web in Provenance Management (SWPM 2009), 2009: p. (electronic proceedings: http://ceur-ws.org/Vol-526/).
Bodenreider O.Ontologies and Data Integration in Biomedicine: Success Stories and Challenging Issues In: Bairoch A, Cohen-Boulakia S, Froidevaux C, editors. Proceedings of the Fifth International Workshop on Data Integration in the Life Sciences (DILS 2008); Berlin Heidelberg New York: Springer; 2008. p. 1-4
Bodenreider O, Coban ZH, Doganay MC, Erdem E, Kosucu H.A preliminary report on answering complex queries related to drug discovery using answer set programming. Proceedings of the 3rd International Workshop on Applications of Logic Programming to the (Semantic) Web and Web Services (ALPSWS2008), 2008: p. 85-90 (electronic proceedings: http://ceur-ws.org/Vol-434/).
Bodenreider O, Burgun A.Oncologic Pathology in Biomedical Terminologies: Challenges for Data Integration Proc APIII conference on "Anatomic Pathology Informatics and Imaging Support for Translational Medicine", Pittsburgh, Pennsylvania, September 9-12, 2007:Abstract 342.
Bodenreider O.Lexical, Terminological and Ontological Resources for Biological Text Mining Ananiadou S, McNaught J, editors. Text mining for biology and biomedicine: Artech House; 2006. p. 43-66.
Bodenreider O, Azuaje F.Incorporating Ontology-Driven Similarity Knowledge Into Functional Genomics: An Exploratory Study Proceedings of the 2004 IEEE Fourth Symposium on Bioinformatics and Bioengineering (BIBE-2004) 2004:317-324.
Bodenreider O, Smith B, Burugn A.The Ontology-Epistemology Divide: A Case Study in Medical Terminology Proceedings of the Third International Conference on Formal Ontology in Information Systems (FOIS2004): IOS Press; 2004. p. 185-195.
Bodenreider O.Comment les Usagers Accedent a l'Information Medicale Aux USA: l'Exemple de MEDLINEplus [How Consumers Access Health Information in the USA: The MEDLINEplus Example] Innovation et Technologie en Biologie et Medecine. 2000;21(5):286-90.
Bodenreider O, Mitchell JA, McCray AT.Evaluation of the UMLS as a Terminology and Knowledge Resource for Biomedical Informatics Proc AMIA Symp. 2002:61-65.
Bodenreider O, Zweigenbaum P.Strategies d'Identification des Noms Propres a Partir de Nomenclatures Medicales Paralleles Traitement Automatique des Langues. 2000;41(3):727-757.
Borovikov E, Yershov S.On Virtual Characters that Can See 7th Annual International Conference on Biologically Inspired Cognitive Architectures, BICA 2016, held July 16 to July 19, 2016 in New York City, NY, USA
Borovikov E, Vajda S, Lingappa G, Antani SK, Thoma GR.Face matching for post-disaster family reunification. IEEE International Conference on Healthcare Informatics. Philadelphia, PA, USA. September 2013.
Botti G, Bodenreider O, Burgun A, Le Beux P, Fieschi M.De la Classification à la Connaissance des Maladies: Une Réflexion à Partir de la Classification Internationale des Maladies [From Classification to Knowledge About Diseases: Thoughts about the International Classification of Diseases] Innovation et Technologie en Biologie et Médecine. 2000;21(5):291-97.
Boyce RD, Voss EA, Huser V, Evans L, Reich C, Duke JD, Tatonetti NP, Lorberbaum T, Dumontier M, Hauben M, Wallberg M.LAERTES: An open scalable architecture for linking pharmacovigilance evidence sources with clinical data. Proc International Conference on Biomedical Ontology and BioCreative (ICBO BioCreative 2016). http://icbo2016.cgrb.oregonstate.edu/node/354.
Browne AC, Kayaalp M, Dodd Z, Sagan, P, McDonald CJ.The Challenges of Creating a Gold Standard for De-identification Research. AMIA Annu Symp Proc. 2014 Nov 14;2014:353-8. eCollection 2014.
Bryant B, Sari-Sarraf H, Long LR, Antani SK.A Kernel Support Vector Machine Trained Using Approximate Global and Exhaustive Local Sampling. Proceedings of the 4th IEEE/ACM International Conference on Big Data Computing, Applications and Technologies (BDCAT) 2017, Austin, Texas, USA, December 2017. Pp. 267-8 DOI: https://doi.org/10.1145/3148055.3149206
Buchanan BG, Chapman W, Cooper GF, Hanbury P, Kayaalp M, Ramachandran M, Saul M.Creating a Software Tool for the Clinical Researcher -- the IPS System Proc AMIA Symp. 2002: : 1210.
Burgun A, Bodenreider O.Issues in Integrating Epidemiology and Research Information in Oncology: Experience with ICD-O3 and the NCI Thesaurus AMIA Annu Symp Proc. 2007 Oct 11:85-9
Caban JJ, Rosebrock A, Yoo TS.Automatic identification of prescription drugs using shape distribution models. In: 19th IEEE International Conference on Image Processing (ICIP); 2012 Sep 30-Oct 3; Lake Buena Vista, Florida. p. 1005-8. DOI: 10.1109/ICIP.2012.6467032
Caban JJ, Yao J, Mollura DJ, Liao D, Yoo TS.Enhancing image analytic tools by fusing quantitative physiological values with image features. In: SIIM [Society for Imaging Informatics in Medicine] 2011 Scientific Abstract Book. SIIM Annual Meeting Learning Track 1 Scientific Sessions: Advanced Visualization: Making Advanced Visualization Tools Work for You; 2011 Jun 2-5; Washington DC/National Harbor, Maryland.
Caban JJ, Rheingans P, Yoo TS.An MRF-based Statistical Deformation Model for Morphological Image Analysis. IEEE Computer Society Workshop on Mathematical Models in Biomedical Image Analysis (MMBIA); 2010 Jun 14; San Francisco:31-8.
Cairelli M, Rindflesch TC.Hierarchical Summarization of Concepts for Visual Discovery Browsing - a Pilot Study [abstract and demo]. Procedings of the IEEE VisWeek Workshop on Visual Analytics in Healthcare, October 23, 2011, Providence, RI, 37-40.
Cairelli MJ, Miller CM, Fiszman M, Workman TE, Rindflesch TC.Semantic MEDLINE for discovery browsing: using semantic predications and the literature-based discovery paradigm to elucidate a mechanism for the obesity paradox. AMIA Annu Symp Proc. 2013 Nov 16;2013:164-73. eCollection 2013.
Callaghan F, Jackson MT, Demner-Fushman D, Abhyankar S, McDonald C.Analysis of data that has been extracted from free-text using natural language processing: a likelihood model for misclassification with an application to medical informatics. International Conference on Advances in Interdisciplinary Statistics and Combinatorics (AISC2012), Greensboro, NC, October 2012
Callaghan F, Jackson MT, Demner-Fushman D, Abhyankar S, McDonald CJ.NLP-derived information improves the estimates of risk of disease compared to estimates based on manually extracted data alone. 5th International Symposium on Semantic Mining in Biomedicine (SMBM 2012), 2012 Sept 3-4, Zurich, Switzerland.
Cameron D, Kavuluru R, Bodenreider O, Mendes PN, Sheth AP, Thirunarayan K.Semantic predications for complex information needs in biomedical literature BIBM 2011:512-519.
Campbell JR, Xu J, Fung K.Can SNOMED CT fulfill the vision of a compositional terminology? Analyzing the use case for problem list. AMIA Annu Symp Proc. 2011;2011:181-8. Epub 2011 Oct 22.
Candemir S, Rajaraman S, Thoma GR, Antani SK.Deep Learning for Grading Cardiomegaly Severity in Chest X-rays: An Investigation. Proc. IEEE Life Sciences Conference (LSC 2018), Montreal, Quebec, Canada, 28 – 30 October 2018. pp. 109-113.
Candemir S, Antani SK, Xue Z, Thoma GR.Novel Method for Storyboarding Biomedical Videos for Medical Informatics. 30th IEEE International Symposium on Computer-Based Medical Systems
Cardillo E, Hernandez, Jr G, Bodenreider O.Integrating consumer-oriented vocabularies with selected professional ones from the UMLS using Semantic Web Technologies. Proceedings of the eHealth 2010 conference, 2010: p. (paper 10579 - electronic proceedings).
Ceccarelli MA, Curioso WH, Liu F, Fontelo P.Do machine translations increase the usefulness of summaries of MEDLINE abstracts? A preliminary study with medical students and physicians in Peru. In: Stud Health Technol Inform [Studies in Health Technology and Informatics] -- MEDINFO 2010: Proceedings of the 13th World Congress on Medical and Health Informatics; 2010 Sep 12-15; Cape Town, South Africa;160:1414.
Chachra S, Ben Abacha A, Shooshan SE, Rodriguez L, Demner-Fushman D.A Hybrid Approach to Generation of Missing Abstracts in Biomedical Literature. Proceedings of COLING 2016, the 26th International Conference on Computational Linguistics: Technical Papers: 1093-1100.
Chang CCH, Callaghan F.Use of Classification Tree Techniques To Determine the Likelihood of Pre-transplant Death Among Patients Awaiting Liver Transplantation. Joint Statistical Meeting Proceedings, Denver CO, 2008.
Chang Y, Antani S, Lee DJ, Gledhill K, Long LR, Christensen P.CBIR of Spine X-ray Images on Inter-vertebral Disc Space and Shape Profiles Proc IEEE CBMS. Jyvaskyla, Finland. June 2008:224-9.
Chen D, Morse BS, Lowekamp B, Yoo TS.Hierarchically partitioned implicit surfaces for interpolating large point set models. In: Kim M-S, Shimada K, editors. Advances in Geometric Modeling and Processing. Proceedings of the 4th international conference on Geometric Modeling and Processing (GMP'06); 2006 Jul 26-28; Pittsburgh, Pennsylvania. Lecture Notes in Computer Science 4077. Berlin: Springer-Verlag; 2006. p. 553-62.
Chen D, Kakadiaris IA, Miller MJ, Loftin RB, Patrick C.Modeling for Plastic and Reconstructive Breast Surgery. In: Delp SL, DiGioia AM, Jaramaz B, editors. Proceedings of the Third International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI); 2000 Oct 11-14; Pittsburgh. Lecture Notes in Computer Science 1935. Springer; 2000. p. 1040-50. DOI: 10.1007/978-3-540-40899-4_108.
Chen S, Misra D, Thoma GR.Efficient Automatic OCR Word Validation Using Word Partial Format Derivation and Language Model Document Recognition and Retrieval XVII. Proceedings of the SPIE. San Jose, CA. January 2010;7534:75340O-75340O-8
Chen S, Mao S, Thoma GR.Simultaneous Layout Style and Logical Entity Recognition in a Heterogeneous Collection of Documents Proc ICDAR2007. Curitiba, Brazil; September 2007, pp. 118-22
Cheng B, Antani SK, Stanley J, Demner-Fushman D, Thoma GR.Automatic segmentation of subfigure image panels for multimodal biomedical document retrieval. Proceeding of: Document Recognition and Retrieval XVIII - DRR 2011, 18th Document Recognition and Retrieval Conference, part of the IS&T-SPIE Electronic Imaging Symposium, San Jose, CA, USA, January 24-29, 2011, Proceedings.
Cheng B, Stanley RJ, Antani SK, Thoma GR.A Novel Computational Intelligence-based Approach For Medical Image Artifacts Detection Proceedings of the 2010 International Conference on Artificial Intelligence and Pattern Recognition. Orlando, FL. July 2010:113-20
Christensen JD, Hutchins GC, McDonald CJ.Computer automated detection of head orientation for prevention of wrong-side treatment errors. AMIA Annu Symp Proc. 2006:136-40.
Cimino J, Jing X, Del Fiol G.Meeting the electronic health record "meaningful use" criterion for the HL7 infobutton standard using OpenInfobutton and the Librarian Infobutton Tailoring Environment (LITE). AMIA Annu Symp Proc. 2012;2012:112-20. Epub 2012 Nov 3.
Cimino JJ, Huser V.Characterization of the Context of Drug Concepts in Research Protocols: An Empiric Study to Guide Ontology Development. AMIA Annu Symp Proc. 2015 Nov 5;2015:441-7. eCollection 2015.
Cimino JJ, Remennick L.Adapting a Clinical Data Repository to ICD-10-CM through the use of a Terminology Repository. AMIA Annu Symp Proc. 2014 Nov 14;2014:405-13. eCollection 2014.
Cimino JJ, Overby CL, Devine EB, Hulse NC, Jing X, Maviglia SM, Del Fiol G.Practical choices for infobutton customization: experience from four sites. AMIA Annu Symp Proc. 2013 Nov 16;2013:236-45. eCollection 2013.
Cimino JJ.The contribution of observational studies and clinical context information for guiding the integration of infobuttons into clinical information systems. AMIA Annu Symp Proc. 2009 Nov 14;2009:109-13.
Cohen T, Widdows D, Rindflesch TC.Expansion-by-analogy: A vector symbolic approach to semantic search. AAAI-Fall 2014 Symposium on Quantum Informatics for Cognitive, Social, and Semantic Processes.
Cohen T, Widdows D, Schvaneveldt RW, Rindflesch TC.Logical Leaps and Quantum Connectives: Forging Paths through Predication Space AAAI-Fall 2010 Symposium on Quantum Informatics for Cognitive, Social, and Semantic Processes
Cohen T, Schvaneveldt R, Rindflesch TC.Predication-based semantic indexing: permutations as a means to encode predications in semantic space. AMIA Annu Symp Proc. 2009 Nov 14;2009:114-8.
Cooper GF, Buchanan BG, Chapman W, Hanbury P, Kayaalp M, Saul M.IPS: A System That Uses Machine Learning to Help Locate Patient Records for Clinical Research. Proc AMIA Symp. 2001: : 813.
Cooper GF, Buchanan BG, Kayaalp M, Saul M, Vries JK.Using computer modeling to help identify patient subgroups in clinical data repositories. Proc AMIA Symp. 1998:180-4.
Culbertson A, Fiszman M, Shin D, Rindflesch TC.Semantic processing to identify adverse drug event information from black box warnings. AMIA Annu Symp Proc. 2014 Nov 14;2014:442-8. eCollection 2014.
Dangi S, Linte C, Yaniv Z.Cine cardiac MRI slice misalignment correction towards full 3D left ventricle segmentation SPIE Medical Imaging: Image-Guided Procedures, Robotic Interventions, and Modeling, Houston, Texas, in press.
De Herrera A, Long LR, Antani SK.Content-Based fMRI Brain Maps Retrieval. International Conference on Brain and Health Informatics, Omaha, NE, USA, October 13-16, 2016.
De Herrera A, Schaer R, Antani SK, Müller H.Using Crowdsourcing for Multi-label Biomedical Compound Figure Annotation. In: Carneiro G. et al. (eds) Deep Learning and Data Labeling for Medical Applications. LABELS 2016, DLMIA 2016. Lecture Notes in Computer Science, vol 10008. Springer, Cham
de Herrera G, Long LR, Antani SK.Graph Representation for Content–based fMRI Activation Map Retrieval. Proceedings of 1st Life Sciences Conference, Sydney, Australia, December 2017 pp. 129-32 DOI: https://doi.org/10.1109/LSC.2017.8268160.
Demner-Fushman D, Mork JG.Extracting Characteristics of the Study Subjects from Full-Text Articles. AMIA Annu Symp Proc. 2015 Nov 5;2015:484-91. eCollection 2015.
Demner-Fushman D, Shooshan SE, Rodriguez L, Antani SK, Thoma GR.Annotation of Chest Radiology Reports for Indexing and Retrieval. Multimodal Retrieval in the Medical Domain 2015 (MRMD 2015), Vienna, Austria, March 29, 2015
Demner-Fushman D, Mork JG, Aronson AR.Mining MEDLINE for problems associated with vitamin D. AMIA Annu Symp Proc. 2013 Nov 16;2013:300-8. eCollection 2013.
Demner-Fushman D, Abhyankar S.Syntactic-semantic frames for clinical cohort identification queries. Data Integration in the Life Sciences (DILS) June 2012, LNBI 7348 proceedings. Lecture Notes in Computer Science. 2012;7348:100-112
Demner-Fushman D, Abhyankar S.Syntactic-semantic question frames for cohort identification. The 2012 Joint Summits on Translational Science. San Francisco, CA. March 2012.
Demner-Fushman D, Karpinski J, Thoma GR.Automatically building a repository to support evidence-based practice. Proceedings of the 2nd Workshop on Building and evaluating resources for biomedical text mining (BioTxtM 2010), 7th Language Resources and Evaluation Conference (LREC 2010). Valetta, Malta. May 2010.
Demner-Fushman D, Seckman C, Fisher C, Hauser SE, Clayton J, Thoma GR.A prototype system to support evidence-based practice AMIA Annu Symp Proc. 2008 Nov 6:151-5.
Demner-Fushman D, Antani SK, Simpson M, Thoma GR.Combining Medical Domain Ontological Knowledge and Low-level Image Features for Multimedia Indexing Procf OntoImage 2008, part of LREC 2008. Marrakech, Morrocco. May 2008:CDROM Proceedings
Demner-Fushman D, Antani S, Thoma GR.Automatically Finding Images for Clinical Decision Support Proc of IEEE DM-Med 2007. Omaha, NE, October 2007, pp. 139-144
Demner-Fushman D, Hauser SE, Humphrey SM, Ford GM, Jacobs JL, Thoma GR.MEDLINE as a Source of Just-in-Time Answers to Clinical Questions. AMIA Annu Symp Proc. 2006:190-4.
Demner-Fushman D, Lin J.Answer Extraction, Semantic Clustering, and Extractive Summarization for Clinical Question Answering Proc COLING/ACL 2006. July 2006, Sydney, Australia
Demner-Fushman D, Lin J.Situated Question Answering in the Clinical Domain: Selecting the Best Drug Treatment for Diseases Proc COLING/ACL 2006 Workshop on Task-Focused Summarization and Question Answering, July 2006, Sydney, Australia
Demner-Fushman D, Humphrey SM, Ide NC, Loane RF, Ruch P, Ruiz ME, Smith LH, Tanabe LK, Wilbur WJ, Aronson AR.Finding Relevant Passages in Scientific Articles: Fusion of Automatic Approaches vs. an Interactive Team Effort. Proc TREC 2006, 569-76.
Demner-Fushman D, Hauser SE, Thoma GR.The role of title, metadata and abstract in identifying clinically relevant journal articles. AMIA Annu Symp Proc. 2005:191-5.
Deserno TM, Antani SK, Long LR.Exploring Access to Scientific Literature Using Content-Based Image Retrieval Proc SPIE Medical Imaging 2007. Vol. 6516: 65160L-1-8.
Dhombres F, Bodenreider O.Trends in Fetal Medicine: A 10-Year Bibliometric Analysis of Prenatal Diagnosis. Stud Health Technol Inform. 2017;245:853-857.
Dhombres F, Bodenreider O.Investigating the lexico-syntactic properties of phenotype terms – Application to interoperability between HPO and SNOMED CT. Proc Joint Bio-Ontologies and BioLINK ISMB'2015 SIG session "Phenotype Day" 2015:8-11.
Doughty E, Kirk B, Kann MG, Bodenreider O.Integrating Drug-gene Associations Mined from the Literature with Drug Information Sources - A Comparison with PharmGKB Proceedings of the 2011 PSB Workshop on Mining the Pharmacogenomics Literature 2011
Dumontier M, Andersson B, Batchelor C, Domarew C, Jentzsch A, Luciano J, Pichler E, Prud'hommeaux E, Whetzel PL, Bodenreider O, Clark T, Harland L, Kashyap V, Kos P, Kozlovsky J, McGurk J, Ogbuji C, Samwald M, Schriml L, Tonellato PJ, Zhao J, Stephens S.The Translational Medicine Ontology: Driving Personalized Medicine by Bridging the Gap from Bedside to Bench Proceedings of the 13th ISMB'2010 SIG meeting Bio-ontologies 2010:120-123
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Karargyris A, Bourbakis N.A methodology for detecting blood-based abnormalities in wireless capsule endoscopy videos. BioInformatics and BioEngineering, 2008. BIBE 2008. 8th IEEE International Conference. 2008 Oct 8; pp 1-6. doi: 10.1109/BIBE.2008.4696806.
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KC S, Antani SK, Thoma GR.Stitched Multipanel Biomedical Figure Separation. IEEE, 28th International Symposium on Computer-Based Medical Systems (CBMS), pp. 54-59, 2015.
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Kim I, Thoma GR.Automated Identification of Potential Conflict-of-Interest in Biomedical Articles Using Hybrid Deep Neural Network. Proc. 14th Int’l Conf. Machine Learning and Data Mining (MLDM 2018), LNAI 10934, pp. 99-112, Newark, NJ, July 2018.
Kim I, Thoma GR.Automated Identification of Potential Conflict-of-Interest in Biomedical Articles Using Hybrid Deep Neural Network. Proc. 14th Int’l Conf. Machine Learning and Data Mining (MLDM 2018), LNAI 10934, pp. 99-112, Newark, NJ, July 2018.
Kim I, Thoma GR.Machine Learning with Selective Word Statistics for Automated Classification of Citation Subjectivity in Online Biomedical Articles. Proc. Int’l Conf. Artificial Intelligence (ICAI’17), pp. 201-207, Las Vegas, July 2017.
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Kim I, Le DX, Thoma GR.Automated identification of biomedical article type using support vector machines. Proc. 18th SPIE Document Recognition and Retrieval, 7874:787403 (1-9), San Francisco, January 2011.
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Kim I, Kim DS, Chien SI.Selective attention based speed-up of error backpropagation algorithm: Application to speaker adaptation. Proc. IASTED Int'l Conf. Signal and Image Processing, pp. 231-235, Hawaii, Aug. 2001.
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Kim IC, Le DX, Thoma GR.Identification of "comment-on sentences" in online biomedical documents using support vector machines. Proc. SPIE conference on Document Recognition and Retrieval, 6500:65000O (1-8), San Jose, January 2007.
Kim J, Tran L, Chew E, Antani SK.Optic Disc and Cup Segmentation for Glaucoma Characterization Using Deep Learning 2019 IEEE 32th International Symposium on Computer-Based Medical Systems (CBMS), pp 489-494, Cordoba, Spain, June 2019.
Kim J, Tran L, Chew E, Antani SK, Thoma GR.Optic Disc Segmentation in Fundus Images Using Deep Learning. SPIE Medical Imaging 2019: Imaging Informatics for Healthcare, Research, and Applications, Vol. 10954, San Diego, USA, February 2019.
Kim J, Candemir S, Chew E, Thoma GR.Region of Interest Detection in Fundus Images Using Deep Learning and Blood Vessel Information. The 31th IEEE International Symposium on Computer-Based Medical Systems. (IEEE CBMS 2018), pp. 357-362, Karlstad, Sweden, June 2018.
Kim J, Hong S, Thoma GR.Labeling Author Affiliations in Biomedical Articles Using Markov Model Classifiers. The 13th International Conference on Data Mining (DMIN2017), pp. 105-110, Las Vegas, USA, July 2017.
Kim J, Thoma GR.Named Entity Recognition in Affiliations of Biomedical Articles Using Statistics and HMM Classifiers. The 2016 International Conference on Data Mining (DMIN2016), Las Vegas, USA, pp. 236-241, July, 2016.
Kim J, Lobuglio PS, Thoma GR.Visualization of Statistics from MEDLINE. 2016 IEEE 29th International Symposium on Computer-Based Medical Systems (CBMS 2016), Dublin and Belfast, Ireland, pp. 290-291, June, 2016.
Kim J, Le DX, Thoma GR.Identification of Investigator Name Zones Using SVM Classifiers and Heuristic Rules. 12th international Conference on Document Analysis and Recognition (ICDAR). Washington D.C., August 2013.
Kim J, Le DX, Thoma GR.Combining SVM Classifiers to Identify Investigator Name Zones in Biomedical Articles. IS&T/SPIE’s 22nd Annual Symposium on Electronic Imaging. San Francisco, CA, January 2012; 8297.
Kim J, Le DX, Thoma GR.Naive Bayes and SVM Classifiers For Classifying Databank Accession Number Sentences From Online Biomedical Articles IS&T/SPIE's 22nd Annual Symposium on Electronic Imaging. San Jose, CA. January 2010;7534:75340U-1 - 8
Kim J, Le DX, Thoma GR.Naive Bayes Classifier for Extracting Bibliographic Information From Biomedical Online Articles Proc 2008 International Conference on Data Mining. Las Vegas, Nevada, USA. July 2008;II:373-8
Kim J, Le DX, Thoma GR.Automatic Extraction of Bibliographic Information from Biomedical Online Journal Articles Using a String Matching Algorithm Proc IEEE CBMS, June 2006, Salt Lake City, Utah; 905-10
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Kury F, Baik SH, McDonald CJ.Analysis of Healthcare Cost and Utilization in the First Two Years of the Medicare Shared Savings Program Using Big Data from the CMS Enclave. AMIA Annu Symp Proc. 2017 Feb 10;2016:724-733. eCollection 2016.
Kury F, Bodenreider O.Desiderata for drug classification systems for their use in analyzing large drug prescription datasets. Proceedings of the 3rd Workshop on Data Mining for Medical Informatics (DMMI 2016), 2016.
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Sneiderman C, Demner-Fushman D, Fiszman M, Rindflesch TC.Semantic Characteristics of MEDLINE Citations Useful for Therapeutic Decision-making AMIA Annu Symp Proc. 2005:1117.
Srinivasan Y, Nutter BS, Mitra SD, Yang S, Phillips B, Long LR.Challenges in Automated Detection of Cervical Intraepithelial Neoplasia Proc SPIE Medical Imaging 2007. Vol. 6514: 65140F-1-11
Sutton VR, Hauser SE.Preliminary comparison of the SEER and PubMed search engines for answering clinical questions using PubMed on Tap, a PDA-based program for accessing biomedical literature AMIA Annu Symp Proc. 2005:1128
Tagare HD, Qian X, Fulbright RK, Long RL, Antani SK.Shape Based Retrieval in NHANES II Proceedings of the 12th Annual ACM International Conference on Multimedia. 2004. 776-779.
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Thoma GR, Ford G, Chung M, Vasudevan K, Antani S.Interactive Publications: Creation and Usage Proc IS and T/SPIE Electronic Imaging 2006: Digital Publishing. San Jose, CA. Jan 15-19, 2006.
Thoma GR, Mao S, Misra D.Automated Metadata Extraction to Preserve the Digital Contents of Biomedical Collections Proc VIIP 2005. September 2005. Benidorm, Spain; 214-19
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Tringali M, Hole WT, Srinivasan S.Integration of a standard gastrointestinal endoscopy terminology in the UMLS Metathesaurus.the UMLS Metathesaurus Proc AMIA Symp. 2002:801-5.
Tulpule B, Hernes DL, Srinivasan Y, Mitra S, Sriraja Y, Nutter BS, Phillips B, Long RL, Ferris DG.A Probabilistic Approach to Segmentation and Classification of Neoplasia in Uterine Cervix Images Using Color and Geometric Features SPIE Medical Imaging, February 2005; San Diego, CA; vol. 5748:995-1003
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Xu T, Xin C, Long LR, Antani SK, Xue Z, Kim E, Huang X.A New Image Data Set and Benchmark for Cervical Dysplasia Classification Evaluation. Machine Learning in Medical Imaging: 6th International Workshop, MLMI 2015, LNCS 9352, pp. 26–35, 2015. DOI: 10.1007/978-3-319-24888-2 4.
Xu T, Huang X, Kim E, Long LR, Antani SK.Multi-test cervical cancer diagnosis with missing data estimation. Proc. SPIE. 9414, Medical Imaging 2015: Computer-Aided Diagnosis, 94140X. (March 20, 2015) doi: 10.1117/12.2080871.
Xu X, Lee DJ, Antani S, Long RL.Pre-Indexing for Fast Partial Shape Matching of Vertebrae Images Proc CBMS 2006, June 2006, Salt Lake City, Utah; 105-10
Xue Z, Rajaraman S, Long LR, Antani SK, Thoma GR.Gender Detection from Spine X-ray Images Using Deep Learning. Proc. IEEE International Symposium on Computer-Based Medical Systems (CBMS), Karlstad, Sweden, 2018. pp. 54-58, DOI:10.1109/CBMS.2018.00017.
Xue Z, Jaeger S, Antani SK, Long LR, Karargyris A, Siegelman J, Folio L, Thoma GR.Localizing tuberculosis in chest radiographs with deep learning. Proc SPIE 10579, Medical Imaging 2018: Imaging Informatics for Healthcare, Research, and Applications, 105790U (6 March 2018) pp. doi: 10.1117/12.2293022
Xue Z, Antani SK, Long LR, Thoma GR.Using deep learning for detecting gender in adult chest radiographs. Proc SPIE 10579, Medical Imaging 2018: Imaging Informatics for Healthcare, Research, and Applications, 105790D (6 March 2018) pp. doi: 10.1117/12.2293027.
Xue Z, Jaeger S, Antani SK, Long LR, Karargyris A, Siegelman J, Folio LR, Thoma GR.Localizing tuberculosis in chest radiographs with deep learning. SPIE Medical Imaging 2018
Xue Z, Antani SK, Long LR, Thoma GR.Automatic multi-label annotation of abdominal CT images using CBIR. Proc. SPIE 10138, Medical Imaging 2017: Imaging Informatics for Healthcare, Research, and Applications, 1013807 (March 13, 2017); doi:10.1117/12.2254368.
Xue Z, Rahman M, Antani SK, Long LR, Demner-Fushman D, Thoma GR.Modality Classification for Searching Figures in Biomedical Literature. Proceedings of the IEEE 29th International Symposium on Computer-Based Medical Systems, pp. 152-157, 2016. doi:10.1109/CBMS.2016.29.
Xue Z, Antani SK, Long LR, Demner-Fushman D, Thoma GR.Improving face image extraction by using deep learning technique. Proc. SPIE 9789, Medical Imaging 2016: PACS and Imaging Informatics: Next Generation and Innovations, 97890J (March 25, 2016); doi:10.1117/12.2216278.
Xue Z, Candemir S, Antani SK, Long LR, Jaeger S, Demner-Fushman D, Thoma GR.Foreign Object Detection in Chest X-rays. Proc IEEE International Conference on Bioinformatics and Biomedicine (BIBM) 2015, International Workshop on Biomedical and Health Informatics, Bethesda, Maryland, Nov. 9-12, 2015, pp: 56-61.
Xue Z, You D, Candemir S, Jaeger S, Antani SK, Long LR, Thoma GR.Chest X-ray Image View Classification The 28th IEEE International Symposium on Computer-Based Medical Systems
