You are here

Printer-friendly versionPrinter-friendly version
Bradley
Lowekamp
Staff Scientist
Location: 
38A
/
B1N30D
Phone Number: (
301
827-4969
Expertise and Research Interests: 
  • Medical image processing
  • Scientific visualization
  • Computer graphics
  • Computer vision
  • Programming languages: C++ (C++0x, tr1), C, Tcl/Tk, Python, Perl, Bash
  • Application programming interfaces: ITK, Qt, OpenGL, VTK, MPI, pthreads, SWIG
  • Applications and development tools: CMake, Matlab, CDash, ImageJ, MS Visual Studio, IMOD, git/svn/cvs
  • Operating systems: Redhat Linux, MacOS X, Windows XP and 7, Cygwin

RESEARCH INTERESTS:

  • Software engineer, open source Insight Toolkit (ITk) community:

      -- Segmentation, registration, and feature extraction for electron microscopy modalities such as FIB-SEM and electron tomography

      --  Advanced data flow for out-of-core processing of large data sets

      -- Distributed computing techniques to enable high throughput data processing

      -- Collaboration with biologists and microscopists to enable data quantification, visualization, and analysis for biological discovery 

EDUCATION:

  • 2002 BS in computer science and mathematics (dual major) and research assistant in the Graphics Animation and Visualization Lab -- University of Maryland Baltimore County

CONTINUING EDUCATION:

  • 2003-2010 -- ACM SIGGRAPH
  • 2008 -- Medical Image Computing and Computer-Assisted Intervention (MICCAI)
  • 2007, 2002-2004 -- IEEE Visualization
Publications/Tools by Bradley Lowekamp: 
Yoo TS, Ackerman MJ, Chen D, Lowekamp B, Kuybeda O, Santoroski J. 3D Informatics April 2014 Technical Report to the LHNCBC Board of Scientific Counselors.
Narayan K, Danielson CM, Lagarec K, Lowekamp BC, Coffman P, Laquerre A, Phaneuf MW, Hope TJ, Subramaniam S. Multi-resolution correlative focused ion beam scanning electron microscopy: applications to cell biology. J Struct Biol. 2014 Mar;185(3):278-84. doi: 10.1016/j.jsb.2013.11.008. Epub 2013 Dec 1.
Lowekamp BC, Chen DT, Ibáñez L, Blezek D. The Design of SimpleITK. Front Neuroinform. 2013 Dec 30;7:45. doi: 10.3389/fninf.2013.00045. eCollection 2013.
Lowekamp B, Chen D. BinShrink: A multi-resolution filter with cache efficient averaging. Insight Journal. Web. 18 November 2013
Yoo TS, Bliss D, Lowekamp B, Chen D, Murphy GE, Narayan K, Hartnell LM, Do T, Subramaniam S. Visualizing cells and humans in 3D: Biomedical image analysis at nanometer and meter scales. IEEE Computer Graphics and Applications. 2012 Sep-Oct;32(5):39-49. DOI: 10.1109/MCG.2012.68.
Murphy GE, Narayan K, Lowekamp B, Hartnell LM, Heymann JA, Fu J, Subramaniam S. Correlative 3D imaging of whole mammalian cells with light and electron microscopy. J Struct Biol. 2011 Dec;176(3):268-78. doi: 10.1016/j.jsb.2011.08.013. Epub 2011 Sep 1.
Murphy GE, Lowekamp B, Zerfas PM, Chandler RJ, Narasimha R, Venditti CP, Subramaniam S. Ion-abrasion scanning electron microscopy reveals distorted liver mitochondrial morphology in murine methylmalonic acidemia. J Struct Biol. 2010 Aug;171(2):125-32. doi: 10.1016/j.jsb.2010.04.005. Epub 2010 Apr 23.
Felts RL, Narayan K, Estes JD, Shi D, Trubey CM, Fu J, Hartnell LM, Ruthel GT, Schneider DK, Nagashima K, Bess JW Jr, Bavari S, Lowekamp B, Bliss D, Lifson JD, Subramaniam S. 3D visualization of HIV transfer at the virological synapse between dendritic cells and T cells. Proc Natl Acad Sci U S A. 2010 Jul 27;107(30):13336-41. doi: 10.1073/pnas.1003040107. Epub 2010 Jul 12.
Lowekamp B, Chen D. A Streaming IO Base Class and Support for Streaming the MRC and VTK File Format. Insight Journal. Web. 2010 Jun 9.
Lowekamp B, Chen D. A Framework for Improved Regression Testing Based Upon CTest and CDash. The Insight Journal. Web. 2009 Jul-Dec.

Pages