Queue: PublicMetaMap
Subject: Error encountered in metamap.
Status: open
Created: Wed Jul 03 09:09:08 2013
Resolved: Not set
LastUpdated: Wed Jul 03 09:10:13 2013
Subject: Error encountered in metamap.
Status: open
Created: Wed Jul 03 09:09:08 2013
Resolved: Not set
LastUpdated: Wed Jul 03 09:10:13 2013
Subject: Error encountered in metamap. Creator: 28 Created: 2013-07-03 13:09:08 Transaction: 1957 Parent: 0 MessageId: Filename: ContentType: text/plain ContentEncoding: none Content: Date: Wed, 3 Jul 2013 18:17:13 +0530 Message-ID:Subject: Error encountered in metamap. From: rohit sebastian <[email redacted]> To: <[email redacted]> Content-Type: multipart/alternative; boundary="001a11c2e1126575f804e09adc20" Return-Path: [email redacted] X-MS-Exchange-Organization-AuthSource: CASHTV08.nih.gov X-MS-Exchange-Organization-AuthAs: Internal X-MS-Exchange-Organization-AuthMechanism: 10 X-MS-Exchange-Organization-AVStamp-Mailbox: MSFTFF;1;0;0 0 0 X-Auto-Response-Suppress: DR, OOF, AutoReply MIME-Version: 1.0 --001a11c2e1126575f804e09adc20 Content-Type: text/plain; charset="ISO-8859-1" Hello, I have created an application in java that retrieves phrases (of max length of 3) from a mysql database and inputs these names to metamap using the java api. It then stores the scores of the mapping. There are about 200 different names and they are given as input one after the other. After a few iterations I get the following error. error(system_error,system_error(SPIO_E_TOO_MANY_OPEN_FILES)) ERROR in calling socket_client_open for Tagger Server on host localhost and port 1795: I've googled the error and most of the solutions i've encountered involves changing the open file limit number (ulimit) to a greater value. Some of the solutions also involve changing the file-max parameter (fs.file-max) to a greater value. I have tried both these solutions independently and together but this error keeps on appearing. Do you know what the problem could be? Regards, Rohit
Subject: Creator: 28 Created: 2013-07-03 13:10:13 Transaction: 1961 Parent: 0 MessageId: [email redacted] Filename: ContentType: text/html ContentEncoding: none Content: Replyed to user:
I have a couple of questions, what version of MetaMap are you using? And are you retaining the Java API instance (MetaMapApiImpl) and making multiple calls to processCitationsFromString using that instance?
Also, what version of Linux or Mac OS/X are you using?
Sincerely,
Willie Rogers