Because of a lapse in government funding, the information on this website may not be up to date, transactions submitted via the website may not be processed, and the agency may not be able to respond to inquiries until appropriations are enacted. The NIH Clinical Center (the research hospital of NIH) is open. For more details about its operating status, please visit cc.nih.gov. Updates regarding government operating status and resumption of normal operations can be found at OPM.gov.
Manual Installation Instructions
(What Installation Script Does)
This page shows what the Sub-Term Mapping Tools installation script does. A manually installation can be performed to replace the installation script. This step by step instruction can be used to install STMT on platforms other than Linux or MS Windows, such as Mac or Unix. It is not recommended for general end users to install the Sub-Term Mapping Tools manually. You may skip this section if you use the STMT script for the installation. Please refer to installation instructions for installing the Sub-Term Mapping Tools.
Setup
Use 2013 release as example
You should now have three files and eight sub-directories under stmt2013, as shown in follows:
java -version
)
/Users/stmt/stmt2013
For example, if the ${STMT_DIR} is /Users/stmt/stmt2013, the modified variable should look like:
ROOT_DIR=/Users/stmt/stmt2013/
LVG_CONFIG_FILE=/Users/stmt/stmt2013/data/Config/lvg.properties
DB_NAME=stmt2013
LVG_DIR=/Users/stmt/stmt2013/data/Lvg/lvg2011lite/
Please refer to configuration setup for details
For example, if the ${STMT_DIR} is /Users/stmt/stmt2013, the modified variable should look like:
ROOT_DIR="/Users/stmt/stmt2013/"
Now you are ready to run stmt, for example:
shell> ${STMT_DIR}/bin/smt -p -pt Cold Cold|cold|C0009264|0|Cold Temperature Cold|cold|C0009443|0|Common Cold Cold|cold|C0010412|0|Cold Therapy Cold|cold|C0024117|0|Chronic Obstructive Airway Disease Cold|cold|C0234192|0|Cold Sensation Cold|cold|C0719425|0|Cold brand of chlorpheniramine-phenylpropanolamine Cold|cold|C1949981|0|Colds homeopathic medication
Please refer to STMT documents for how to use STMT (Help -> Documents (h)
)
Please note that the stmt executable file includes: