Overlap RealWord Tags

I. Introduction

This is the detail log for tags that have multiple annotations with RealWord. These errors are RealWord. However, the baseline program corrected these tokens as nonWord. The quick fixes for such tags are:

• Change the Misspelling/ToMerge/ToSplit to RealWord, then remove the RealWord
• Change the AnnotatorNotes and point to RealWord

II. Revision Program

• Program: ${POST_PROCESS}/bin/PostBrat
• Input Data: ${POST_PROCESS_DATA}/Brat/Baseline/brat
• Output Data: ${POST_PROCESS_DATA}/Brat/Baseline/reports
• Output Data: ${POST_PROCESS_DATA}/Brat/BaselineRevised/bratRevised

• In Brat annotation - correct spelling for original terms
  • shell> PostBrat
1
3
  • manually go through each finding (allTags.rpt.contains.realWord)
  • Document in here (html)
  • Manually updates to revised Brat (BaselineRevised)

III. Revision Log

• RealWord Overlap (40) - (allTags.rpt.contains.realWord):

  FileId|TagId	Position	Original Term	Corrected Term	Notes
  1|T8	102|108	on set	onset	1, Change-1
  12|T4	100|110	phalangeal		OK, part of Merge
  12|T3	94|99	rhino		OK, part of Merge
  24|T14	255|265	some thing	something	2, Change-2
  30|T3	144|155	there after	thereafter	3, Change-3
  33|T2	164|172	web site	website	4, Change-4
  39|T6	547|556	some what	somewhat	5, Change-5
  39|T5	363|378	under developed	underdeveloped	6, Change-6
  62|T2	173|182	life long		No change
  74|T2	612|622	great full	grateful	7, Change-7
  10349|T5	76|81	along	a long	8, Change-8
  10349|T4	34|39	along	a long	9, Change-9
  10679|T3	81|89	use full	useful	10, Change-s102
  10934|T2	39|48	specially	especially	Duplicated tag
  11225|T3	25|34	over read	overread	11, Change-11
  11435|T7	62|71	some time	sometime	12, Change-12
  11435|T6	33|42	some time	sometime	13, Change-13
  11579|T13	800|814	anti psychotic	antipsychotic	14, Change-14
  11579|T12	742|759	Meth amphetamines	Methamphetamines	15, Change-15
  11579|T11	678|686	with out	without	16, Change-16
  11579|T10	657|668	worth while	worthwhile	17, Change-17
  11757|T2	32|42	care taker	care taker	18, delete-1
  12271|T15	574|579	in to	into	19, Change-18
  12353|T3	73|85	Alzheimer 's	Alzheimer's	OK, part of Merge
  12520|T2	289|303	post menopause	postmenopause	20, Change-19
  12646|T5	197|206	what ever	whatever	21, Change-20
  12745|T2	0|15	Extra Corporeal	Extracorporeal	22, Change-21
  12800|T25	674|685	through out	throughout	23, Change-22
  13287|T2	3|14	grand child	grandchild	24, Change-23
  13645|T2	54|70	non prescription	nonprescription	25, Change-24
  13864|T5	274|279	apart	a part	26, Change-25
  13864|T4	260|267	my self	myself	27, Change-26
  14296|T6	97|105	some one	someone	28, Change-27
  16799|T1	214|225	through out	throughout	29, Change-28
  16823|T4	36|46	After noon	afternoon	30, Add-1
  16829|T5	27|39	grand father	grandfather	31, Change-29
  16974|T3	51|59	non drug	nondrug	32, Change-30
  17170|T7	138|143	i 'll	i'll	33, Change-31
  18766|T3	47|57	some times	sometimes	34, Change-32
  19818|T4	121|131	boy friend	boyfriend	35, Change-33