CSpell

Errors on Not-Tagged Terms

I. Introduction

This is the detail log for revising the baseline Brat tags. This page describes terms (tokens) are not tagged in Brat, but they are spelling errors and should be corrected.

II. Revision Program

Program: ${POST_PROCESS}/bin/PostBrat
Input Data: ${POST_PROCESS_DATA}/Brat/Baseline/brat
Output Data: ${POST_PROCESS_DATA}/Brat/BaselineRevised/bratRevised
Not in Brat annotation - incorrect spelling
- shell> PostBrat
  1
  20
- manually go through each error finding (errOnNonTagWords.data.tag)
  
  Tag Instance No Notes
  TAG_OK 60 The original tag is OK (the term is a correct spelling)
  TAG_ER 66 (46) The original tag is error (the not-tagged term is a spelling error)
  TAG_TBD 0 To be done
- Document in here (html)
- Manually updates to revised Brat (BaselineRevised)

Tag	Instance No	Notes
TAG_OK	60	The original tag is OK (the term is a correct spelling)
TAG_ER	66 (46)	The original tag is error (the not-tagged term is a spelling error)
TAG_TBD	0	To be done

III. Revision Log

File ID	ErrorType	Position	Original Term	Corrected Term	Notes
10025	ToSplit	61\|73	U-Creatinine	Urine Creatinine	1, New-1
10025	Misspelling	114\|120	nnol/d	mmol/d	2, New-2
10054	Misspelling	85\|102	Klippel-Tranaunay	Klippel-Trenaunay	Duplicated tag
10054	ToSplit	103\|119	Syndrome...There	Syndrome... There	Duplicated tag
10714	Misspelling	311\|328	situation/diabits	situation/diabetes	Duplicated tag
10826	ToSplit	12\|22	[NAME],and	[NAME], and	3, Change-1
11199	Misspelling	1416\|1424	doctor’s	doctor's	Removed - Not English
11199	Misspelling	1595\|1600	i.r.m	IRM	Removed - Not English
11199	Misspelling	1726\|1734	évidence	evidence	Removed - Not English
11587	Misspelling	176\|184	steriods	steroids	4, New-3
11709	Misspelling	9\|16	sydrome	syndrome	5, New-4
11757	Misspelling	110\|116	dosn't	doesn't	6, New-5
11757	Misspelling	832\|846	unknowledgable	unknowledgeable	7, New-6
11975	Unknown	80\|100	fatigue--ongoing--is	fatigue--ongoing--is	No Change

12	ToMerge	87\|110	tricho rhino phalangeal	Trichorhinophalangeal	Duplicated tag
12043	Misspelling	0\|11	CITROBACTOR	CITROBACTER	8, New-7
12085	Misspelling	17\|23	studen	student	9, New-8
12145	Misspelling	125\|136	realgarding	regarding	10, New-9
12190	Misspelling	45\|58	TRANSFERRENCE	TRANSFERENCE	11, New-10
12235	ToSplit	80\|95	treatmet(Plasma	treatment (Plasma	Combo, Duplicated tag
12235	Misspelling	124\|151	osteoarthritis/condropathia	osteoarthritis/chondropathia	Duplicated tag
12271	Misspelling	697\|707	proceedure	procedure	12, New-11
12769	ToSplit	90\|114	[ORGANIZATION][LOCATION]	[ORGANIZATION] [LOCATION]	13, New-12, special tag
12800	ToSplit	88\|98	dob-[DATE]	dob - [DATE]	14, New-13, special tag

13	Misspelling	49\|55	N.S.W.	NSW	15, New-14
13082	Misspelling	646\|652	vaccum	vacuum	16, New-15
13090	Misspelling	119\|126	doesn’t	doesn't	17, New-16
14349	Misspelling	95\|106	trombolysis	thrombolysis	18, New-17
15721	Misspelling	971\|991	familial/longetudnal	familial/longitudinal	Duplicated tag
15759	ToSplit	101\|109	[NAME],I	[NAME], I	19, New-18, special tag
15759	Misspelling	366\|376	depresants	depressants	20, New-19

16174	ToSplit	135\|142	s.typhi	s. typhi	21, New-20
16174	ToSplit	150\|157	s.typhi	s. typhi	22, New-21
16174	ToSplit	165\|181	s.paraty :ah=nil	s. paratyphi: an=nil	23, New-22, Combo
16174	ToSplit	182\|196	s.paraty:bh=20	s. paratyphi: bh=20	24, New-23, Combo
16247	ToMerge	368\|379	long Gevity	longevity	Duplicated tag
16253	Misspelling	206\|214	THRUSDAY	THURSDAY	25, New-24
16282	Misspelling	4\|10	w.b.c.	wbc	26, New-25
16363	ToMerge	174\|187	ant-trips sin	antitrypsin	Duplicated tag, Combo
16481	Misspelling	421\|425	anyt	any	Duplicated tag
16519	Misspelling	26\|36	MedlinePus	MedlinePlus	27, New-26
16656	Misspelling	267\|275	Mebthera	Mabthera	28, New-27
16859	Misspelling	12\|40	gastreonterology-colonoscopy	gastroenterology-colonoscopy	29, New-28

17078	Misspelling	71\|80	clearence	clearance	30, New-29
17170	Misspelling	0\|6	staphy	staph	31, New-30
17170	ToSplit	118\|139	"scanty"..i	"scanty".. i	Duplicated Tag, Combo
17226	Misspelling	195\|203	sugeries	surgeries	32, New-31
17740	Misspelling	322\|336	heperbariatric	hyperbaric	33, New-32
17740	Misspelling	414\|428	hyperbariatric	hyperbaric	34, New-33
17948	Misspelling	758\|764	dont's	don'ts	35, New-34
18341	ToSplit	117\|126	vain(cryo	vain (cryo	Duplicated tag
18341	ToSplit	127\|162	surgery,surgery,steroid,compression	surgery, surgery, steroid, compression	Duplicated tag
18770	ToSplit	51\|66	girl(5'8")	girl (5'8")	36, New-35

20	ToSplit	370\|382	position,but	position, but	37, New-36
30	ToSplit	468\|483	Folitrax(weekly	Folitrax (weekly	Duplicated tag
38	Misspelling	6\|14	sindrome	syndrome	38, New-37
38	Misspelling	45\|53	sindrome	syndrome	39, New-3s87
44	Misspelling	107\|113	anwser	answer	40, New-39
52	Misspelling	217\|224	dieases	diseases	41, New-40
5243	Misspelling	315\|319	gemn	gem	Duplicated tag
63	ToSplit	389\|405	hemmorhage--both	hemorrhage -- both	42, New-41, Combo
63	Misspelling	1011\|1022	private-pay	private pay	43, New-42
66	Misspelling	0\|18	Beckwith-Wieddeman	Beckwith-Wiedemann	Duplicated tag
70	Misspelling	34\|40	SERACH	SEARCH	44, New-43
85	Misspelling	56\|62	diease	disease	45, New-44
85	Misspelling	197\|203	diease	disease	46, New-45